Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003127.1

Orthogroup ID

OG0010986

Physical Location & Seq

Genomic Coordinates Reverse (-)

248831 .. 250216

Gene Structure 1386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

atgtactgttccttctcaaactccctctctcttcttctgcttcttctgatcctcccactctcttcttctattccttctgtctcaaactcaaatgcacaccattccaccaacaccatcaacatggttccatctgaagcagaaactctcttcaccatcatggagtccatgtcctctgatcaaacctggagagtctcctttcccaaaccatgtcaaccaggccaaacatggcctggaatcgagtgcaaactaggagcagacaaccacctacatgtctcaaggcttgactttggtaaccatccaaatccaagttgcaagagaacagctacatttccttcagaaatctctgctcttccacatcttcaatctgtgttcttcttcaactgtttcactcacactaagaccagtttctctgtttcaagagcctccaatgcttcttcacttcaacagctcagtctccggtcgaatccggcactagttggtccaatcccacctcagatttcatcactcaagtcccttgaaatccttacattgtctcaaaaccgcctcaccggaaaaatcccaccagaggttttcagcttgagcagcttagtacaccttgatttgagctacaatatgctgacaggcactatcccagtccaactaggcagtctcagaaaccttcaaggccttgatttgagctacaatatgctcactgggtcaatcccaaactcaattggggaactggtgttgcttcagaaagttgacttcagctcaaatttgctcagtgggggcattcctgagggaattcatcagctcagtttgttgaatttcctggctttgagcaacaacaaattgcatggacaattcccaaaaggtttggagaaactgcaaagcttgcagtatttaattttagatggtaatccaatgaacataactctgccattggagcttggtaagttggtgaaacttcaagaactcaggcttgctgattctgggtactcaggtactataccagaaagcttttcacagctcaagaacttgagcactttgtcattgcagaacaaccgtctaaccggtgaaattccgcttggttttggcagtctctcacgcatataccacttgaatcttagtaggaacatgttgggtggtgttgtgcctttcaatccaagtttcttgagtaggttgggaaggaacttggatctcagtggaaaccctggtctctgcttgagtccctctgaagcacatattttgaagattggagttaatgtttgtggaaccaatagcaatggttctgctatccttccattgaagaattctcaagcttcatctgggctctctaaaccgttctttctccttacacctgctttatgtgttttgggattgcatcagatattgtttctagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0002682 GO:0002831 GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0007275 GO:0007389 GO:0008150 GO:0008356 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010090 GO:0010103 GO:0010374 GO:0010375 GO:0010376 GO:0016020 GO:0016043 GO:0030154 GO:0030312 GO:0031224 GO:0031225 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033218 GO:0033612 GO:0033993 GO:0042221 GO:0042277 GO:0043207 GO:0043900 GO:0044425 GO:0044464 GO:0045088 GO:0048367 GO:0048468 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051301 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0080134 GO:0090558 GO:0090626 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:1900150 GO:1901700 GO:1901701 GO:1905034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

461

Amino Acids

49.87

Weight (kDa)

8.75

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	127 - 225	5.7e-08	Leucine-rich repeat region
LRR_8	PF13855	146 - 206	1.1e-06	Leucine rich repeat
LRR_8	PF13855	171 - 230	1.6e-10	Leucine rich repeat
LRR_14	PF23598	214 - 321	8.7e-09	Leucine-rich repeat region
LRR_14	PF23598	284 - 370	7.6e-08	Leucine-rich repeat region
LRR_8	PF13855	315 - 374	5.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42800
fragaria_vesca	FvH4_6g37770
malus_domestica	MD09G1156200.v1.1 MD17G1142500.v1.1
prunus_persica	Prupe.3G169100_v2.0.a1 Prupe.3G169100_v2.0.a1
pyrus_communis	pycom09g07500 pycom17g13570
rosa_chinensis	RchiOBHm_Chr2g0150831
rosa_laevigata	RLG00000020510
rosa_multiflora	Rmu_sc0003127.1_g000061 Rmu_sc0007617.1_g000016 Rmu_sc0024470.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096930
rosa_rugosa	Rorug02G0422600
rosa_samantha	Rh2AG482900 Rh2BG495500 Rh2CG469200 Rh2DG506300
rosa_wichuraiana	Rw2G039580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1348
Acc36I	ACCTGC	1 cut(s)	1348
AciI	CCGC	2 cut(s)	541, 1064
AclWI	GGATC	2 cut(s)	43, 1185
AcsI	RAATTY	5 cut(s)	754, 783, 805, 1059, 1291
AcuI	CTGAAG	5 cut(s)	153, 318, 716, 730, 1236
AfaI	GTAC	4 cut(s)	5, 591, 977, 985
AfiI	CCNNNNNNNGG	1 cut(s)	565
AflIII	ACRYGT	2 cut(s)	268, 1116
AgeI	ACCGGT	1 cut(s)	1052
AhlI	ACTAGT	1 cut(s)	472
AjnI	CCWGG	5 cut(s)	182, 214, 229, 810, 1192
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
Alw21I	GWGCWC	1 cut(s)	1025
Alw26I	GTCTC	8 cut(s)	85, 196, 277, 458, 537, 653, 1085, 1202
AlwI	GGATC	2 cut(s)	43, 1185
AoxI	GGCC	3 cut(s)	217, 227, 664
ApeKI	GCWGC	1 cut(s)	582
ApoI	RAATTY	5 cut(s)	754, 783, 805, 1059, 1291
AsiGI	ACCGGT	1 cut(s)	1052
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	4 cut(s)	142, 538, 952, 1067
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	777
BaeI	ACNNNNGTAYC	2 cut(s)	967, 1000
BanII	GRGCYC	1 cut(s)	1314
BarI	GAAGNNNNNNTAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	1025
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	5 cut(s)	122, 136, 161, 303, 887
BciT130I	CCWGG	5 cut(s)	184, 216, 231, 812, 1194
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	8 cut(s)	85, 196, 277, 458, 537, 653, 1085, 1202
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	4 cut(s)	248, 473, 641, 1379
BfuAI	ACCTGC	1 cut(s)	1348
BisI	GCNGC	1 cut(s)	583
BlsI	GCNGC	1 cut(s)	584
Bme1390I	CCNGG	5 cut(s)	184, 216, 231, 812, 1194
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	126, 1255
BmrFI	CCNGG	5 cut(s)	184, 216, 231, 812, 1194
BmrI	ACTGGG	2 cut(s)	626, 702
BmsI	GCATC	1 cut(s)	1372
BmuI	ACTGGG	2 cut(s)	626, 702
BpmI	CTGGAG	1 cut(s)	205
BpuEI	CTTGAG	8 cut(s)	259, 491, 598, 995, 1039, 1174, 1225, 1281
BsaBI	GATNNNNATC	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	1202
BsaJI	CCNNGG	1 cut(s)	1192
BsaWI	WCCGGW	3 cut(s)	456, 548, 1052
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 1230, 1260
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	4 cut(s)	402, 632, 697, 726
Bse21I	CCTNAGG	1 cut(s)	777
Bse3DI	GCAATG	2 cut(s)	1031, 1270
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	5 cut(s)	184, 216, 231, 812, 1194
BseDI	CCNNGG	1 cut(s)	1192
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMI	GCAATG	2 cut(s)	1031, 1270
BseMII	CTCAG	9 cut(s)	463, 506, 664, 768, 775, 808, 970, 993, 1195
BseNI	ACTGG	4 cut(s)	402, 632, 697, 726
BseXI	GCAGC	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	219, 229, 666
BshTI	ACCGGT	1 cut(s)	1052
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	1025
BsiSI	CCGG	4 cut(s)	457, 467, 549, 1053
BslFI	GGGAC	2 cut(s)	496, 1194
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmAI	GTCTC	8 cut(s)	85, 196, 277, 458, 537, 653, 1085, 1202
BsmFI	GGGAC	2 cut(s)	496, 1194
BsmI	GAATGC	1 cut(s)	771
BsnI	GGCC	3 cut(s)	219, 229, 666
Bso31I	GGTCTC	1 cut(s)	1202
Bsp1286I	GDGCHC	2 cut(s)	1025, 1314
Bsp143I	GATC	3 cut(s)	48, 175, 1177
BspACI	CCGC	2 cut(s)	541, 1064
BspANI	GGCC	3 cut(s)	219, 229, 666
BspCNI	CTCAG	9 cut(s)	462, 505, 663, 769, 774, 807, 969, 992, 1194
BspLI	GGNNCC	2 cut(s)	126, 1255
BspMI	ACCTGC	1 cut(s)	1348
BspPI	GGATC	2 cut(s)	43, 1185
BspQI	GCTCTTC	1 cut(s)	354
BspTNI	GGTCTC	1 cut(s)	1202
BsrDI	GCAATG	2 cut(s)	1031, 1270
BsrFI	RCCGGY	1 cut(s)	1052
BsrI	ACTGG	4 cut(s)	402, 632, 697, 726
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	1 cut(s)	1192
BssMI	GATC	3 cut(s)	48, 175, 1177
Bst2UI	CCWGG	5 cut(s)	184, 216, 231, 812, 1194
Bst4CI	ACNGT	4 cut(s)	8, 383, 1046, 1323
Bst6I	CTCTTC	4 cut(s)	36, 67, 152, 354
BstAPI	GCANNNNNTGC	1 cut(s)	874
BstC8I	GCNNGC	2 cut(s)	875, 963
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	3 cut(s)	51, 178, 1180
BstMAI	GTCTC	8 cut(s)	85, 196, 277, 458, 537, 653, 1085, 1202
BstMBI	GATC	3 cut(s)	48, 175, 1177
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 582, 874, 925
BstNI	CCWGG	5 cut(s)	184, 216, 231, 812, 1194
BstNSI	RCATGY	2 cut(s)	272, 1120
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	5 cut(s)	182, 214, 229, 810, 1192
BstV1I	GCAGC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	1177
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	1177
Bsu36I	CCTNAGG	1 cut(s)	777
BsuRI	GGCC	3 cut(s)	219, 229, 666
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	3 cut(s)	690, 769, 1189
BveI	ACCTGC	1 cut(s)	1348
Cac8I	GCNNGC	2 cut(s)	875, 963
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	4 cut(s)	4, 590, 976, 984
CspAI	ACCGGT	1 cut(s)	1052
CviAII	CATG	8 cut(s)	121, 157, 166, 207, 225, 269, 836, 1117
CviQI	GTAC	4 cut(s)	4, 590, 976, 984
DpnI	GATC	3 cut(s)	50, 177, 1179
DpnII	GATC	3 cut(s)	48, 175, 1177
Eam1104I	CTCTTC	4 cut(s)	36, 67, 152, 354
EarI	CTCTTC	4 cut(s)	36, 67, 152, 354
Eco147I	AGGCCT	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	1314
Eco31I	GGTCTC	1 cut(s)	1202
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	5 cut(s)	153, 318, 716, 730, 1236
Eco81I	CCTNAGG	1 cut(s)	777
Eco91I	GGTNACC	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	290
EcoRI	GAATTC	2 cut(s)	783, 1291
EcoRII	CCWGG	5 cut(s)	182, 214, 229, 810, 1192
EcoT38I	GRGCYC	1 cut(s)	1314
FaeI	CATG	8 cut(s)	124, 160, 169, 210, 228, 272, 839, 1120
FaqI	GGGAC	2 cut(s)	496, 1194
FatI	CATG	8 cut(s)	120, 156, 165, 206, 224, 268, 835, 1116
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	583
FokI	GGATG	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	1314
Fsp4HI	GCNGC	1 cut(s)	583
FspBI	CTAG	4 cut(s)	248, 473, 641, 1379
GluI	GCNGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	219, 229, 666
HapII	CCGG	4 cut(s)	457, 467, 549, 1053
Hin1II	CATG	8 cut(s)	124, 160, 169, 210, 228, 272, 839, 1120
HincII	GTYRAC	2 cut(s)	212, 742
HindII	GTYRAC	2 cut(s)	212, 742
HindIII	AAGCTT	3 cut(s)	871, 997, 1299
HinfI	GANTC	7 cut(s)	161, 189, 234, 463, 968, 1102, 1207
HpaII	CCGG	4 cut(s)	457, 467, 549, 1053
HphI	GGTGA	4 cut(s)	142, 538, 952, 1067
Hpy166II	GTNNAC	3 cut(s)	212, 592, 742
Hpy188I	TCNGA	9 cut(s)	48, 133, 175, 337, 495, 653, 735, 1216, 1368
Hpy188III	TCNNGA	5 cut(s)	417, 776, 950, 1012, 1153
Hpy8I	GTNNAC	3 cut(s)	212, 592, 742
HpyAV	CCTTC	6 cut(s)	22, 84, 342, 668, 1161, 1289
HpyCH4III	ACNGT	4 cut(s)	8, 383, 1046, 1323
HpyCH4V	TGCA	8 cut(s)	95, 243, 312, 835, 868, 877, 1036, 1363
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 582, 874, 925
Hsp92II	CATG	8 cut(s)	124, 160, 169, 210, 228, 272, 839, 1120
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	48, 175, 1177
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	251, 925
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	1 cut(s)	1372
MaeI	CTAG	4 cut(s)	248, 473, 641, 1379
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	3 cut(s)	50, 177, 1179
MboI	GATC	3 cut(s)	48, 175, 1177
MfeI	CAATTG	1 cut(s)	711
MflI	RGATCY	1 cut(s)	1177
MhlI	GDGCHC	2 cut(s)	1025, 1314
MluCI	AATT	9 cut(s)	711, 754, 783, 805, 830, 842, 885, 1059, 1291
MlyI	GAGTC	3 cut(s)	170, 198, 1216
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	9 cut(s)	35, 62, 181, 433, 501, 554, 559, 772, 1222
MseI	TTAA	2 cut(s)	884, 1242
MslI	CAYNNNNRTG	3 cut(s)	119, 155, 267
MspI	CCGG	4 cut(s)	457, 467, 549, 1053
MspR9I	CCNGG	5 cut(s)	184, 216, 231, 812, 1194
MunI	CAATTG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	771
MvaI	CCWGG	5 cut(s)	184, 216, 231, 812, 1194
MwoI	GCNNNNNNNGC	4 cut(s)	428, 582, 874, 925
NdeII	GATC	3 cut(s)	48, 175, 1177
NlaIII	CATG	8 cut(s)	124, 160, 169, 210, 228, 272, 839, 1120
NlaIV	GGNNCC	2 cut(s)	126, 1255
NspI	RCATGY	2 cut(s)	272, 1120
PaqCI	CACCTGC	1 cut(s)	1348
PceI	AGGCCT	1 cut(s)	666
PciI	ACATGT	2 cut(s)	268, 1116
PciSI	GCTCTTC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	234, 463, 968, 1102
PinAI	ACCGGT	1 cut(s)	1052
PkrI	GCNGC	1 cut(s)	584
PleI	GAGTC	3 cut(s)	169, 197, 1215
PpsI	GAGTC	3 cut(s)	169, 197, 1215
PscI	ACATGT	2 cut(s)	268, 1116
Psp6I	CCWGG	5 cut(s)	182, 214, 229, 810, 1192
PspEI	GGTNACC	1 cut(s)	290
PspGI	CCWGG	5 cut(s)	182, 214, 229, 810, 1192
PspN4I	GGNNCC	2 cut(s)	126, 1255
PspPI	GGNCC	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	1177
RsaI	GTAC	4 cut(s)	5, 591, 977, 985
RsaNI	GTAC	4 cut(s)	4, 590, 976, 984
RseI	CAYNNNNRTG	3 cut(s)	119, 155, 267
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	884, 1242
SatI	GCNGC	1 cut(s)	583
Sau3AI	GATC	3 cut(s)	48, 175, 1177
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	3 cut(s)	170, 198, 1216
ScrFI	CCNGG	5 cut(s)	184, 216, 231, 812, 1194
SduI	GDGCHC	2 cut(s)	1025, 1314
SfaNI	GCATC	1 cut(s)	1372
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	3 cut(s)	119, 155, 267
SmlI	CTYRAG	8 cut(s)	274, 506, 577, 1010, 1018, 1153, 1204, 1296
SmoI	CTYRAG	8 cut(s)	274, 506, 577, 1010, 1018, 1153, 1204, 1296
SpeI	ACTAGT	1 cut(s)	472
Sse9I	AATT	9 cut(s)	711, 754, 783, 805, 830, 842, 885, 1059, 1291
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	2 cut(s)	541, 1064
SspMI	CTAG	4 cut(s)	248, 473, 641, 1379
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	5 cut(s)	182, 214, 229, 810, 1192
TaaI	ACNGT	4 cut(s)	8, 383, 1046, 1323
TaqI	TCGA	2 cut(s)	237, 461
TasI	AATT	9 cut(s)	711, 754, 783, 805, 830, 842, 885, 1059, 1291
TatI	WGTACW	2 cut(s)	3, 589
TfiI	GAWTC	4 cut(s)	234, 463, 968, 1102
Tru1I	TTAA	2 cut(s)	884, 1242
Tru9I	TTAA	2 cut(s)	884, 1242
TscAI	CASTG	3 cut(s)	697, 769, 1189
TseI	GCWGC	1 cut(s)	582
TspDTI	ATGAA	4 cut(s)	489, 776, 920, 1293
TspRI	CASTG	3 cut(s)	697, 769, 1189
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	5 cut(s)	754, 783, 805, 1059, 1291
XceI	RCATGY	2 cut(s)	272, 1120
XcmI	CCANNNNNNNNNTGG	2 cut(s)	222, 227
XspI	CTAG	4 cut(s)	248, 473, 641, 1379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.