Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003304.1

Orthogroup ID

OG0007211

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2576

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1418 bp

ctggctgctctgatggtaattgcataatatgggattttgagaccaggggcattgctaaggagctccgtgataaagactgtgttgctgccataactagtgtatgttggtcaaaatatggtcatcgcgttcttgtgtctgcagctgacaaatcgttgacactatgggatgttgtcagtggtgagaagataacaagaacaatgctgcaacaaacccctctacaagctcggttatatcctggttcctctactccatctctctgtctggcttgccctctctcatctgctcctatgattgttgacttgaatacaggaagtgcaactatgcttccggtctccattccagactctaacccaggatttgcccctccatcgcggaataaaatctctgatggaactccccccttttctcctactgctgcttgctttaataagtatggggatctggtttacgcagggaactccaaaggagaaatacttctaatagattataaaagtgtccaagtgcttgcaatggttcctacttctggaggttccgtgattaagaatatagtattcagcaggaatggtcagtatctgcttacaaattcaaatgatagaacaataaggatttacgagaaccttcttcccttgaaagatggactcaaagccctaaatggcttgactgctcttgatggactagatgatgctgagaagttgaaagttgttggatcaaaatgcttaacactattccgtgagtttcaagataccatcacaaagatgcattggaaagcaccttgtttcagtggtgatggtgagtgggtaattggtggttctgcaagcaaaggagaacacaagatttacatatgggacagggctgggcatcttgtgaaaattcttgaagggccaaaggaagccttgatcgatttagtgtggcatcctgttcatcccattgttgtctctgtttccctgacgggcttggtttatatttgggctaaagattacactgagaactggagtgcatttgctcctgattttaaggagctcgaggaaaatgaggagtacatagaacgagaagatgaatttgatctgatacccgaaactgaaaaggccaaagaatctaatgttaatgaagatgatgaagttgatatcgtgacagtggacaaggattcagctttcagtgattcagatatgtcacaggaagagctatgcttcttgcccgcaattcctttgcctgatgctcctgagcaacaagacaagtgcttagaaagttcatcaaagttggtggaaagtaacaattctggctcccctctttcagaagagggcagacctaatggtcgtgcaatgaatcatgcatcaagtccgcttgaagaggatcctggagcaacacgcttgaaaagaaaacggaagccttctgaaaagtggttggacttgcagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034708 GO:0034968 GO:0035064 GO:0035097 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044666 GO:0048188 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051568 GO:0051716 GO:0061458 GO:0070013 GO:0071339 GO:0071704 GO:0071840 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

471

Amino Acids

51.85

Weight (kDa)

4.86

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	1 - 73	1e-05	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	2 - 65	2.6e-06	WDR5 beta-propeller domain
EIF3I	PF24805	29 - 204	1.4e-06	EIF3I
Beta-prop_EML_2	PF23414	137 - 204	1.4e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21060
fragaria_vesca	FvH4_2g10510 FvH4_2g10510 FvH4_2g10510 FvH4_2g10510
malus_domestica	MD02G1259400.v1.1 MD07G1061200.v1.1
prunus_persica	Prupe.5G058900_v2.0.a1 Prupe.5G058900_v2.0.a1
pyrus_communis	pycom02g22080
rosa_chinensis	RchiOBHm_Chr6g0268021
rosa_laevigata	RLG00000013939
rosa_multiflora	Rmu_sc0001839.1_g000031 Rmu_sc0003304.1_g000001 Rmu_sc0003304.1_g000039 Rmu_sc0004529.1_g000038
rosa_roxburghii	Rroxscaffold_7G00200120 Rroxscaffold_7G00200140
rosa_rugosa	Rorug06G0038800
rosa_samantha	Rh6AG158100 Rh6BG162100 Rh6CG156300 Rh6DG147700
rosa_wichuraiana	Rw0G021300 Rw6G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AasI	GACNNNNNNGTC	1 cut(s)	1310
AccII	CGCG	2 cut(s)	125, 372
AciI	CCGC	3 cut(s)	372, 1196, 1339
AclWI	GGATC	4 cut(s)	446, 714, 1345, 1358
AcsI	RAATTY	3 cut(s)	582, 869, 1057
AfaI	GTAC	1 cut(s)	1039
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	8 cut(s)	303, 587, 630, 696, 739, 877, 1345, 1371
AhlI	ACTAGT	1 cut(s)	94
AjnI	CCWGG	4 cut(s)	43, 234, 351, 1353
AluBI	AGCT	7 cut(s)	63, 142, 223, 1020, 1150, 1182, 1413
AluI	AGCT	7 cut(s)	63, 142, 223, 1020, 1150, 1182, 1413
Alw21I	GWGCWC	2 cut(s)	65, 1022
Alw26I	GTCTC	3 cut(s)	34, 336, 939
AlwI	GGATC	4 cut(s)	446, 714, 1345, 1358
AlwNI	CAGNNNCTG	1 cut(s)	573
Ama87I	CYCGRG	1 cut(s)	1021
AoxI	GGCC	2 cut(s)	880, 1085
ApeKI	GCWGC	6 cut(s)	5, 85, 139, 201, 415, 1410
ApoI	RAATTY	3 cut(s)	582, 869, 1057
Asp700I	GAANNNNTTC	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	880
AsuHPI	GGTGA	3 cut(s)	190, 796, 802
AvaI	CYCGRG	1 cut(s)	1021
BamHI	GGATCC	1 cut(s)	1350
BanII	GRGCYC	2 cut(s)	65, 1022
Bbv12I	GWGCWC	2 cut(s)	65, 1022
BbvI	GCAGC	4 cut(s)	72, 151, 188, 402
BccI	CCATC	8 cut(s)	7, 258, 375, 382, 628, 664, 754, 781
BciT130I	CCWGG	4 cut(s)	45, 236, 353, 1355
BcoDI	GTCTC	3 cut(s)	34, 336, 939
BcuI	ACTAGT	1 cut(s)	94
BfaI	CTAG	2 cut(s)	95, 676
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	6 cut(s)	6, 86, 140, 202, 416, 1411
BlsI	GCNGC	6 cut(s)	7, 87, 141, 203, 417, 1412
Bme1390I	CCNGG	4 cut(s)	45, 236, 353, 1355
BmeT110I	CYCGRG	1 cut(s)	1021
BmgT120I	GGNCC	1 cut(s)	880
BmiI	GGNNCC	5 cut(s)	240, 515, 531, 1281, 1352
BmrFI	CCNGG	4 cut(s)	45, 236, 353, 1355
BmsI	GCATC	6 cut(s)	672, 746, 867, 921, 1203, 1339
BpmI	CTGGAG	3 cut(s)	545, 1011, 1376
Bpu10I	CCTNAGC	2 cut(s)	56, 1220
Bsa29I	ATCGAT	1 cut(s)	899
BsaI	GGTCTC	2 cut(s)	34, 336
BsaJI	CCNNGG	2 cut(s)	44, 351
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	994
Bse3DI	GCAATG	3 cut(s)	50, 515, 1325
BseBI	CCWGG	4 cut(s)	45, 236, 353, 1355
BseCI	ATCGAT	1 cut(s)	899
BseDI	CCNNGG	2 cut(s)	44, 351
BseGI	GGATG	3 cut(s)	171, 912, 921
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	3 cut(s)	50, 515, 1325
BseMII	CTCAG	3 cut(s)	677, 974, 1211
BseNI	ACTGG	1 cut(s)	994
BseRI	GAGGAG	1 cut(s)	1048
BseXI	GCAGC	4 cut(s)	72, 151, 188, 402
BseYI	CCCAGC	1 cut(s)	853
Bsh1236I	CGCG	2 cut(s)	125, 372
BshFI	GGCC	2 cut(s)	882, 1087
BshVI	ATCGAT	1 cut(s)	899
BsiHKAI	GWGCWC	2 cut(s)	65, 1022
BsiHKCI	CYCGRG	1 cut(s)	1021
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	3 cut(s)	34, 336, 939
BsmFI	GGGAC	1 cut(s)	859
BsnI	GGCC	2 cut(s)	882, 1087
Bso31I	GGTCTC	2 cut(s)	34, 336
BsoBI	CYCGRG	1 cut(s)	1021
Bsp1286I	GDGCHC	2 cut(s)	65, 1022
Bsp143I	GATC	5 cut(s)	438, 706, 896, 1062, 1350
BspACI	CCGC	3 cut(s)	372, 1196, 1339
BspANI	GGCC	2 cut(s)	882, 1087
BspCNI	CTCAG	3 cut(s)	678, 975, 1212
BspDI	ATCGAT	1 cut(s)	899
BspFNI	CGCG	2 cut(s)	125, 372
BspLI	GGNNCC	5 cut(s)	240, 515, 531, 1281, 1352
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	4 cut(s)	446, 714, 1345, 1358
BspQI	GCTCTTC	1 cut(s)	1172
BspTNI	GGTCTC	2 cut(s)	34, 336
BsrDI	GCAATG	3 cut(s)	50, 515, 1325
BsrI	ACTGG	1 cut(s)	994
BssECI	CCNNGG	2 cut(s)	44, 351
BssMI	GATC	5 cut(s)	438, 706, 896, 1062, 1350
Bst2UI	CCWGG	4 cut(s)	45, 236, 353, 1355
Bst4CI	ACNGT	2 cut(s)	79, 1134
Bst6I	CTCTTC	3 cut(s)	1172, 1289, 1340
BstC8I	GCNNGC	5 cut(s)	267, 420, 506, 816, 1196
BstDEI	CTNAG	5 cut(s)	56, 686, 983, 1220, 1239
BstF5I	GGATG	3 cut(s)	171, 912, 921
BstFNI	CGCG	2 cut(s)	125, 372
BstKTI	GATC	5 cut(s)	441, 709, 899, 1065, 1353
BstMAI	GTCTC	3 cut(s)	34, 336, 939
BstMBI	GATC	5 cut(s)	438, 706, 896, 1062, 1350
BstNI	CCWGG	4 cut(s)	45, 236, 353, 1355
BstSCI	CCNGG	4 cut(s)	43, 234, 351, 1353
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	2 cut(s)	125, 372
BstV1I	GCAGC	4 cut(s)	72, 151, 188, 402
BstX2I	RGATCY	2 cut(s)	438, 1350
BstYI	RGATCY	2 cut(s)	438, 1350
Bsu15I	ATCGAT	1 cut(s)	899
BsuRI	GGCC	2 cut(s)	882, 1087
BsuTUI	ATCGAT	1 cut(s)	899
BtgZI	GCGATG	2 cut(s)	106, 353
BtsCI	GGATG	3 cut(s)	171, 912, 921
BtsIMutI	CAGTG	5 cut(s)	180, 786, 980, 1139, 1161
Cac8I	GCNNGC	5 cut(s)	267, 420, 506, 816, 1196
CaiI	CAGNNNCTG	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	880
ClaI	ATCGAT	1 cut(s)	899
Csp6I	GTAC	1 cut(s)	1038
CspCI	CAANNNNNGTGG	2 cut(s)	1241, 1276
CviAII	CATG	1 cut(s)	1327
CviQI	GTAC	1 cut(s)	1038
DdeI	CTNAG	5 cut(s)	56, 686, 983, 1220, 1239
DpnI	GATC	5 cut(s)	440, 708, 898, 1064, 1352
DpnII	GATC	5 cut(s)	438, 706, 896, 1062, 1350
DrdI	GACNNNNNNGTC	1 cut(s)	1310
DseDI	GACNNNNNNGTC	1 cut(s)	1310
Eam1104I	CTCTTC	3 cut(s)	1172, 1289, 1340
EarI	CTCTTC	3 cut(s)	1172, 1289, 1340
Ecl136II	GAGCTC	2 cut(s)	63, 1020
Eco24I	GRGCYC	2 cut(s)	65, 1022
Eco31I	GGTCTC	2 cut(s)	34, 336
Eco32I	GATATC	1 cut(s)	1125
Eco53kI	GAGCTC	2 cut(s)	63, 1020
Eco88I	CYCGRG	1 cut(s)	1021
EcoICRI	GAGCTC	2 cut(s)	63, 1020
EcoRII	CCWGG	4 cut(s)	43, 234, 351, 1353
EcoRV	GATATC	1 cut(s)	1125
EcoT22I	ATGCAT	2 cut(s)	761, 1332
EcoT38I	GRGCYC	2 cut(s)	65, 1022
FaeI	CATG	1 cut(s)	1330
FalI	AAGNNNNNCTT	2 cut(s)	877, 909
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	1 cut(s)	1326
FauI	CCCGC	1 cut(s)	1203
FauNDI	CATATG	1 cut(s)	841
Fnu4HI	GCNGC	6 cut(s)	6, 86, 140, 202, 416, 1411
FokI	GGATG	3 cut(s)	178, 899, 908
FriOI	GRGCYC	2 cut(s)	65, 1022
Fsp4HI	GCNGC	6 cut(s)	6, 86, 140, 202, 416, 1411
FspBI	CTAG	2 cut(s)	95, 676
GluI	GCNGC	6 cut(s)	6, 86, 140, 202, 416, 1411
GsaI	CCCAGC	1 cut(s)	857
GsuI	CTGGAG	3 cut(s)	545, 1011, 1376
HaeIII	GGCC	2 cut(s)	882, 1087
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	1 cut(s)	1330
HincII	GTYRAC	2 cut(s)	155, 297
HindII	GTYRAC	2 cut(s)	155, 297
HinfI	GANTC	6 cut(s)	343, 638, 1093, 1144, 1159, 1323
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	3 cut(s)	190, 796, 802
Hpy166II	GTNNAC	4 cut(s)	155, 297, 447, 1137
Hpy188I	TCNGA	6 cut(s)	12, 387, 1067, 1164, 1293, 1392
Hpy188III	TCNNGA	8 cut(s)	340, 524, 667, 739, 874, 1006, 1128, 1219
Hpy8I	GTNNAC	4 cut(s)	155, 297, 447, 1137
HpyAV	CCTTC	3 cut(s)	628, 871, 1397
HpyCH4III	ACNGT	2 cut(s)	79, 1134
HpyF3I	CTNAG	5 cut(s)	56, 686, 983, 1220, 1239
Hsp92II	CATG	1 cut(s)	1330
Kzo9I	GATC	5 cut(s)	438, 706, 896, 1062, 1350
LguI	GCTCTTC	1 cut(s)	1172
LmnI	GCTCC	8 cut(s)	60, 68, 288, 1008, 1017, 1221, 1285, 1357
Lsp1109I	GCAGC	4 cut(s)	72, 151, 188, 402
LweI	GCATC	6 cut(s)	672, 746, 867, 921, 1203, 1339
MaeI	CTAG	2 cut(s)	95, 676
MaeIII	GTNAC	3 cut(s)	1128, 1169, 1267
MalI	GATC	5 cut(s)	440, 708, 898, 1064, 1352
MboI	GATC	5 cut(s)	438, 706, 896, 1062, 1350
MboII	GAAGA	7 cut(s)	195, 613, 1063, 1120, 1189, 1306, 1357
MflI	RGATCY	2 cut(s)	438, 1350
MhlI	GDGCHC	2 cut(s)	65, 1022
MluCI	AATT	7 cut(s)	18, 582, 800, 869, 1057, 1199, 1272
MlyI	GAGTC	2 cut(s)	337, 632
MmeI	TCCRAC	2 cut(s)	684, 1382
Mph1103I	ATGCAT	2 cut(s)	761, 1332
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	5 cut(s)	425, 539, 718, 1013, 1103
MslI	CAYNNNNRTG	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	4 cut(s)	45, 236, 353, 1355
MvaI	CCWGG	4 cut(s)	45, 236, 353, 1355
MvnI	CGCG	2 cut(s)	125, 372
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	5 cut(s)	438, 706, 896, 1062, 1350
NlaIII	CATG	1 cut(s)	1330
NlaIV	GGNNCC	5 cut(s)	240, 515, 531, 1281, 1352
NmuCI	GTSAC	2 cut(s)	1128, 1169
NsiI	ATGCAT	2 cut(s)	761, 1332
PaeR7I	CTCGAG	1 cut(s)	1021
PciSI	GCTCTTC	1 cut(s)	1172
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	4 cut(s)	1093, 1144, 1159, 1323
PfoI	TCCNGGA	1 cut(s)	1353
PkrI	GCNGC	6 cut(s)	7, 87, 141, 203, 417, 1412
PleI	GAGTC	2 cut(s)	337, 632
PpsI	GAGTC	2 cut(s)	337, 632
PsiI	TTATAA	1 cut(s)	488
Psp124BI	GAGCTC	2 cut(s)	65, 1022
Psp6I	CCWGG	4 cut(s)	43, 234, 351, 1353
PspFI	CCCAGC	1 cut(s)	853
PspGI	CCWGG	4 cut(s)	43, 234, 351, 1353
PspN4I	GGNNCC	5 cut(s)	240, 515, 531, 1281, 1352
PspPI	GGNCC	1 cut(s)	880
PspXI	VCTCGAGB	1 cut(s)	1021
PstI	CTGCAG	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	573
PsuI	RGATCY	2 cut(s)	438, 1350
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	1039
RsaNI	GTAC	1 cut(s)	1038
RseI	CAYNNNNRTG	1 cut(s)	754
SacI	GAGCTC	2 cut(s)	65, 1022
SapI	GCTCTTC	1 cut(s)	1172
SaqAI	TTAA	5 cut(s)	425, 539, 718, 1013, 1103
SatI	GCNGC	6 cut(s)	6, 86, 140, 202, 416, 1411
Sau3AI	GATC	5 cut(s)	438, 706, 896, 1062, 1350
Sau96I	GGNCC	1 cut(s)	880
SchI	GAGTC	2 cut(s)	337, 632
ScrFI	CCNGG	4 cut(s)	45, 236, 353, 1355
SduI	GDGCHC	2 cut(s)	65, 1022
SfaNI	GCATC	6 cut(s)	672, 746, 867, 921, 1203, 1339
SfcI	CTRYAG	1 cut(s)	137
Sfr274I	CTCGAG	1 cut(s)	1021
SlaI	CTCGAG	1 cut(s)	1021
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	1021
SmoI	CTYRAG	1 cut(s)	1021
SpeI	ACTAGT	1 cut(s)	94
Sse9I	AATT	7 cut(s)	18, 582, 800, 869, 1057, 1199, 1272
SsiI	CCGC	3 cut(s)	372, 1196, 1339
SspMI	CTAG	2 cut(s)	95, 676
SstI	GAGCTC	2 cut(s)	65, 1022
StyD4I	CCNGG	4 cut(s)	43, 234, 351, 1353
TaaI	ACNGT	2 cut(s)	79, 1134
TaqI	TCGA	2 cut(s)	899, 1022
TasI	AATT	7 cut(s)	18, 582, 800, 869, 1057, 1199, 1272
TatI	WGTACW	1 cut(s)	1037
TfiI	GAWTC	4 cut(s)	1093, 1144, 1159, 1323
Tru1I	TTAA	5 cut(s)	425, 539, 718, 1013, 1103
Tru9I	TTAA	5 cut(s)	425, 539, 718, 1013, 1103
TscAI	CASTG	5 cut(s)	180, 786, 987, 1139, 1161
TseFI	GTSAC	2 cut(s)	1128, 1169
TseI	GCWGC	6 cut(s)	5, 85, 139, 201, 415, 1410
Tsp45I	GTSAC	2 cut(s)	1128, 1169
TspDTI	ATGAA	6 cut(s)	910, 1070, 1121, 1130, 1238, 1336
TspGWI	ACGGA	4 cut(s)	55, 522, 718, 1395
TspRI	CASTG	5 cut(s)	180, 786, 987, 1139, 1161
XapI	RAATTY	3 cut(s)	582, 869, 1057
XhoI	CTCGAG	1 cut(s)	1021
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	95, 676
Zsp2I	ATGCAT	2 cut(s)	761, 1332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.