Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003367.1

Orthogroup ID

OG0018606

Physical Location & Seq

Genomic Coordinates Forward (+)

111524 .. 113198

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgaaggatactacagcggaaaaggaagagatctttgtgaaggagagagctaaatgggaagctgaaaacaggtgtcgctacaacaagagaaggaaggctgttaaagatgtcccttgcttttgggttacagcaatgtatgctaacaagataatccgtaaggagattgcaaagcacgatgaagatgctctcgaattcctgaaggacatcaagtcatgtaggacagatgatctaaaaggattccagctggaattcatgtttgattcttccaatccttacttcaaaaatgaggtcctcaccaaaaagtatgagctgaaggatggcggagagtgtacattcttgatggcaattgggacggaaatcaactggtatcctggcaaaaccttgacagaaagtattgagaaaatgaccattggatctgaggttgttcaagtagcccaaacatgtcaaagtttcttcaacttctttgctacgaaaactcatcggacttctctttgtttggatgaagatgctgataaactcaaaggcaatattattcccctggattatgcaatcgctgtcatacttagagacgatatcattccacacgcaatatcgtggtttaattatgatgaagaagctgctatggatgaagaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008283 GO:0009987 GO:0016020 GO:0016444 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048869 GO:0050896 GO:0051716 GO:0071704 GO:0071944 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

212

Amino Acids

24.69

Weight (kDa)

5.05

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	6 - 200	5.7e-46	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018606)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0062051
rosa_laevigata	RLG00000035528
rosa_multiflora	Rmu_sc0003367.1_g000023 Rmu_sc0017669.1_g000010
rosa_roxburghii	Rroxscaffold_2G00153690
rosa_rugosa	Rorug05G0345800
rosa_samantha	Rh2AG027700 Rh2CG028000 Rh2DG027800
rosa_wichuraiana	Rw2G002190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	17, 321
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	191, 248
AcuI	CTGAAG	2 cut(s)	218, 332
AfaI	GTAC	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	3 cut(s)	280, 428, 457
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	370, 537
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	5 cut(s)	50, 62, 244, 310, 617
AluI	AGCT	5 cut(s)	50, 62, 244, 310, 617
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	1 cut(s)	421
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	2 cut(s)	191, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	2 cut(s)	311, 334
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	2 cut(s)	372, 539
BciVI	GTATCC	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	378
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	619
Bme1390I	CCNGG	2 cut(s)	372, 539
Bme18I	GGWCC	1 cut(s)	289
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	372, 539
BmsI	GCATC	2 cut(s)	172, 496
BsaJI	CCNNGG	1 cut(s)	537
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	372, 539
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	3 cut(s)	322, 505, 631
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	604
BslFI	GGGAC	2 cut(s)	95, 364
BsmAI	GTCTC	1 cut(s)	561
BsmBI	CGTCTC	1 cut(s)	561
BsmFI	GGGAC	2 cut(s)	95, 364
Bsp1407I	TGTACA	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	30, 226, 413
BspACI	CCGC	2 cut(s)	17, 321
BspCNI	CTCAG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	3 cut(s)	30, 226, 413
Bst2UI	CCWGG	2 cut(s)	372, 539
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	417, 563
BstF5I	GGATG	3 cut(s)	322, 505, 631
BstKTI	GATC	3 cut(s)	33, 229, 416
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	3 cut(s)	30, 226, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	372, 539
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	370, 537
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	604
BstX2I	RGATCY	2 cut(s)	30, 413
BstYI	RGATCY	2 cut(s)	30, 413
BsuI	GTATCC	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	322, 505, 631
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	3 cut(s)	213, 253, 441
CviJI	RGCY	7 cut(s)	50, 62, 98, 244, 310, 434, 617
CviKI_1	RGCY	7 cut(s)	50, 62, 98, 244, 310, 434, 617
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	2 cut(s)	417, 563
DpnI	GATC	3 cut(s)	32, 228, 415
DpnII	GATC	3 cut(s)	30, 226, 413
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	218, 332
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRI	GAATTC	2 cut(s)	191, 248
EcoRII	CCWGG	2 cut(s)	370, 537
EcoRV	GATATC	1 cut(s)	574
Esp3I	CGTCTC	1 cut(s)	561
FaeI	CATG	3 cut(s)	216, 256, 444
FaiI	YATR	9 cut(s)	138, 214, 254, 306, 442, 546, 560, 606, 623
FaqI	GGGAC	2 cut(s)	95, 364
FatI	CATG	3 cut(s)	212, 252, 440
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	2 cut(s)	329, 512
Fsp4HI	GCNGC	1 cut(s)	618
GluI	GCNGC	1 cut(s)	618
Hin1II	CATG	3 cut(s)	216, 256, 444
HinfI	GANTC	2 cut(s)	237, 260
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	418, 483
Hpy188III	TCNNGA	3 cut(s)	188, 196, 337
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	5 cut(s)	34, 84, 88, 193, 307
HpyCH4V	TGCA	2 cut(s)	167, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	417, 563
Hsp92II	CATG	3 cut(s)	216, 256, 444
Kzo9I	GATC	3 cut(s)	30, 226, 413
LpnPI	CCDG	9 cut(s)	55, 209, 230, 254, 349, 357, 384, 524, 551
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	2 cut(s)	172, 496
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	3 cut(s)	32, 228, 415
MboI	GATC	3 cut(s)	30, 226, 413
MboII	GAAGA	6 cut(s)	38, 191, 255, 445, 515, 623
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	30, 413
MluCI	AATT	4 cut(s)	191, 248, 345, 601
MnlI	CCTC	3 cut(s)	280, 302, 412
MseI	TTAA	2 cut(s)	102, 600
MspA1I	CMGCKG	2 cut(s)	17, 244
MspR9I	CCNGG	2 cut(s)	372, 539
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	2 cut(s)	372, 539
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	3 cut(s)	30, 226, 413
NlaIII	CATG	3 cut(s)	216, 256, 444
NspI	RCATGY	1 cut(s)	444
PciI	ACATGT	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	237, 260
PkrI	GCNGC	1 cut(s)	619
PpuMI	RGGWCCY	1 cut(s)	289
PscI	ACATGT	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	370, 537
PspGI	CCWGG	2 cut(s)	370, 537
PspPI	GGNCC	1 cut(s)	289
PspPPI	RGGWCCY	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	30, 413
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	102, 600
SatI	GCNGC	1 cut(s)	618
Sau3AI	GATC	3 cut(s)	30, 226, 413
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	372, 539
SetI	ASST	9 cut(s)	52, 64, 74, 246, 291, 312, 383, 423, 619
SfaNI	GCATC	2 cut(s)	172, 496
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	289
Sse9I	AATT	4 cut(s)	191, 248, 345, 601
SsiI	CCGC	2 cut(s)	17, 321
SspI	AATATT	1 cut(s)	529
StyD4I	CCNGG	2 cut(s)	370, 537
TaqI	TCGA	1 cut(s)	189
TasI	AATT	4 cut(s)	191, 248, 345, 601
TatI	WGTACW	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	237, 260
Tru1I	TTAA	2 cut(s)	102, 600
Tru9I	TTAA	2 cut(s)	102, 600
TseI	GCWGC	1 cut(s)	617
TspDTI	ATGAA	5 cut(s)	17, 192, 241, 516, 624
TspGWI	ACGGA	2 cut(s)	143, 368
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	2 cut(s)	191, 248
XceI	RCATGY	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.