Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003452.1

Orthogroup ID

OG0018259

Physical Location & Seq

Genomic Coordinates Forward (+)

3515 .. 6797

Gene Structure 3283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atggttatgctgctttgtggtttaagtttgaacttcaacagtcatggtttagattgtgaatttcaagtgggaaatgaggacactgcctatgagcagagcattaggctttgcagtgtggtgtttctgttgactgttgtaattggtgaccatgacataccaccaaattctgacaacgtagccactggggcgggtttagattgtgaatttcaaatgggaaatgaggacactgcctatgagcagagcattaggctttgcagtgtggtgtttctgttgactgttgtaattggtgaccatgacataccaccaaattctgacaacgtagccactggggcgggtttagattgtgaatttcaaatgggaaatgaggacactgcctatgagcagagcattaggctttgcagtgtggtgtttctgttgactgttgtaattggtgaccatgacataccaccaaattctgacaacgtagccactggggcgggtttagattgtgaatttcaaatgggaaatgaggacactgcctatgagcagagcattaggctttgcagtgtggtgtttctgttgactgttgtaattggtgaccatgacataccaccaaattctgacaacgtagccactggggcgggtttagattgtgaatttcaaatgggaaatgaggacactgcctatgagcagagcattaggctttgcagtgtggtgtttctgttgactgttgtaattggtgaccatgacataccaccaaattctgacaacgtagccactggggcgggtttagattgtgaatttcaaatgggaaatgaggacactgcctatgagcagagctttaggctttgcaatgtagcgtttctgttatcggactcacttggggttgggcttggaattggaaagattggcatacatgttcttggccttgaagctctactgtcaagcaagaatcgagtagagaagagagcgatttcccgttccggtggcgacctcaacatcctccgctacctccaaaatgacagcgttttctcccaaatggtgatccatttctatttggcgaagatcgtctacgcgctagagcacctccacagcatggggatcgcttaccgggatttgaacctggagaacatgctgatccaacagtcgggtcacttgccctcagggacttcgacctttccaaaagcctcaagcacctacacactcggagattcgccacaagaacctcacgcgctggatccgccgcaaacatcgcaagaacttcaagcacctcaacgacgagcgggccaacttgtttgtcggcaccgaggagggacgacgccgtttaaggggaagagcaggaaggagacgttctggaacgtgctgacgaagacgccggagttggaagatgaggttgtgggctggagagtcgggtcggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

466

Amino Acids

50.69

Weight (kDa)

4.46

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	327 - 379	5.1e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018259)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000002 Rmu_sc0007014.1_g000003
rosa_samantha	Rh1CG033400 Rh2AG271600 Rh2AG510100 Rh2AG667200 Rh2BG678700 Rh2CG495300 Rh4BG379400 Rh4CG393800 Rh4DG131900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1281
AccB7I	CCANNNNNTGG	1 cut(s)	1075
AccBSI	CCGCTC	1 cut(s)	1262
AccI	GTMKAC	1 cut(s)	1050
AccII	CGCG	2 cut(s)	1055, 1211
AciI	CCGC	9 cut(s)	188, 332, 476, 620, 764, 985, 1220, 1223, 1262
AclWI	GGATC	5 cut(s)	1018, 1088, 1111, 1211, 1224
AcyI	GRCGYC	2 cut(s)	1298, 1352
AfiI	CCNNNNNNNGG	3 cut(s)	1075, 1126, 1307
AflIII	ACRYGT	1 cut(s)	895
AjnI	CCWGG	1 cut(s)	1101
AluBI	AGCT	2 cut(s)	819, 914
AluI	AGCT	2 cut(s)	819, 914
Alw21I	GWGCWC	1 cut(s)	1065
Alw26I	GTCTC	1 cut(s)	1319
AlwI	GGATC	5 cut(s)	1018, 1088, 1111, 1211, 1224
AoxI	GGCC	2 cut(s)	904, 1264
ApeKI	GCWGC	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	1057, 1213
AspS9I	GGNCC	1 cut(s)	1264
AsuC2I	CCSGG	1 cut(s)	1091
AsuHPI	GGTGA	6 cut(s)	155, 299, 443, 587, 731, 1033
AxyI	CCTNAGG	1 cut(s)	1141
BamHI	GGATCC	1 cut(s)	1216
BanI	GGYRCC	1 cut(s)	1281
BarI	GAAGNNNNNNTAC	2 cut(s)	1034, 1066
BbsI	GAAGAC	1 cut(s)	1355
Bbv12I	GWGCWC	1 cut(s)	1065
BceAI	ACGGC	1 cut(s)	1285
BcgI	CGANNNNNNTGC	2 cut(s)	1063, 1097
BciT130I	CCWGG	1 cut(s)	1103
BcnI	CCSGG	1 cut(s)	1091
BcoDI	GTCTC	1 cut(s)	1319
BfaI	CTAG	1 cut(s)	1058
BglI	GCCNNNNNGGC	5 cut(s)	185, 329, 473, 617, 761
BisI	GCNGC	2 cut(s)	11, 1223
BlsI	GCNGC	2 cut(s)	12, 1224
Bme1390I	CCNGG	2 cut(s)	1091, 1103
BmgT120I	GGNCC	1 cut(s)	1264
BmiI	GGNNCC	2 cut(s)	1218, 1283
BmrFI	CCNGG	2 cut(s)	1091, 1103
BmrI	ACTGGG	5 cut(s)	192, 336, 480, 624, 768
BmuI	ACTGGG	5 cut(s)	192, 336, 480, 624, 768
BpiI	GAAGAC	1 cut(s)	1355
BpmI	CTGGAG	1 cut(s)	1124
BpuEI	CTTGAG	1 cut(s)	1153
BpuMI	CCSGG	1 cut(s)	1091
BsaHI	GRCGYC	2 cut(s)	1298, 1352
BsaJI	CCNNGG	1 cut(s)	1285
BsaWI	WCCGGW	1 cut(s)	962
Bsc4I	CCNNNNNNNGG	3 cut(s)	1075, 1126, 1307
Bse1I	ACTGG	5 cut(s)	187, 331, 475, 619, 763
Bse21I	CCTNAGG	1 cut(s)	1141
Bse3DI	GCAATG	1 cut(s)	838
BseBI	CCWGG	1 cut(s)	1103
BseDI	CCNNGG	1 cut(s)	1285
BseGI	GGATG	1 cut(s)	978
BseLI	CCNNNNNNNGG	3 cut(s)	1075, 1126, 1307
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	1 cut(s)	1155
BseNI	ACTGG	5 cut(s)	187, 331, 475, 619, 763
BseRI	GAGGAG	1 cut(s)	1302
Bsh1236I	CGCG	2 cut(s)	1055, 1211
BshFI	GGCC	2 cut(s)	906, 1266
BshNI	GGYRCC	1 cut(s)	1281
BsiHKAI	GWGCWC	1 cut(s)	1065
BsiSI	CCGG	3 cut(s)	963, 1090, 1355
BslFI	GGGAC	2 cut(s)	1159, 1306
BslI	CCNNNNNNNGG	3 cut(s)	1075, 1126, 1307
BsmAI	GTCTC	1 cut(s)	1319
BsmBI	CGTCTC	1 cut(s)	1319
BsmFI	GGGAC	2 cut(s)	1159, 1306
BsnI	GGCC	2 cut(s)	906, 1266
Bsp1286I	GDGCHC	1 cut(s)	1065
Bsp143I	GATC	5 cut(s)	1023, 1044, 1080, 1116, 1216
BspACI	CCGC	9 cut(s)	188, 332, 476, 620, 764, 985, 1220, 1223, 1262
BspANI	GGCC	2 cut(s)	906, 1266
BspCNI	CTCAG	1 cut(s)	1154
BspFNI	CGCG	2 cut(s)	1055, 1211
BspLI	GGNNCC	2 cut(s)	1218, 1283
BspPI	GGATC	5 cut(s)	1018, 1088, 1111, 1211, 1224
BspQI	GCTCTTC	1 cut(s)	1307
BspT107I	GGYRCC	1 cut(s)	1281
BsrBI	CCGCTC	1 cut(s)	1262
BsrDI	GCAATG	1 cut(s)	838
BsrI	ACTGG	5 cut(s)	187, 331, 475, 619, 763
BssECI	CCNNGG	1 cut(s)	1285
BssMI	GATC	5 cut(s)	1023, 1044, 1080, 1116, 1216
BssNI	GRCGYC	2 cut(s)	1298, 1352
Bst2UI	CCWGG	1 cut(s)	1103
Bst4CI	ACNGT	8 cut(s)	41, 133, 277, 421, 565, 709, 921, 1125
Bst6I	CTCTTC	2 cut(s)	938, 1307
BstACI	GRCGYC	2 cut(s)	1298, 1352
BstC8I	GCNNGC	1 cut(s)	1264
BstDEI	CTNAG	1 cut(s)	1141
BstEII	GGTNACC	5 cut(s)	143, 287, 431, 575, 719
BstF5I	GGATG	1 cut(s)	978
BstFNI	CGCG	2 cut(s)	1055, 1211
BstHHI	GCGC	2 cut(s)	1057, 1213
BstKTI	GATC	5 cut(s)	1026, 1047, 1083, 1119, 1219
BstMAI	GTCTC	1 cut(s)	1319
BstMBI	GATC	5 cut(s)	1023, 1044, 1080, 1116, 1216
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 329, 473, 617, 761, 1219, 1231
BstNI	CCWGG	1 cut(s)	1103
BstNSI	RCATGY	2 cut(s)	899, 1114
BstPI	GGTNACC	5 cut(s)	143, 287, 431, 575, 719
BstSCI	CCNGG	2 cut(s)	1089, 1101
BstUI	CGCG	2 cut(s)	1055, 1211
BstV2I	GAAGAC	1 cut(s)	1355
BstX2I	RGATCY	1 cut(s)	1216
BstYI	RGATCY	1 cut(s)	1216
Bsu36I	CCTNAGG	1 cut(s)	1141
BsuRI	GGCC	2 cut(s)	906, 1266
BtgZI	GCGATG	1 cut(s)	1215
BtsCI	GGATG	1 cut(s)	978
Cac8I	GCNNGC	1 cut(s)	1264
CfoI	GCGC	2 cut(s)	1057, 1213
Cfr13I	GGNCC	1 cut(s)	1264
CseI	GACGC	2 cut(s)	1306, 1360
CviAII	CATG	9 cut(s)	44, 149, 293, 437, 581, 725, 896, 1075, 1111
DdeI	CTNAG	1 cut(s)	1141
DpnI	GATC	5 cut(s)	1025, 1046, 1082, 1118, 1218
DpnII	GATC	5 cut(s)	1023, 1044, 1080, 1116, 1216
Eam1104I	CTCTTC	2 cut(s)	938, 1307
EarI	CTCTTC	2 cut(s)	938, 1307
EciI	GGCGGA	1 cut(s)	1209
Eco81I	CCTNAGG	1 cut(s)	1141
Eco91I	GGTNACC	5 cut(s)	143, 287, 431, 575, 719
EcoO65I	GGTNACC	5 cut(s)	143, 287, 431, 575, 719
EcoRII	CCWGG	1 cut(s)	1101
Esp3I	CGTCTC	1 cut(s)	1319
FaeI	CATG	9 cut(s)	47, 152, 296, 440, 584, 728, 899, 1078, 1114
FaqI	GGGAC	2 cut(s)	1159, 1306
FatI	CATG	9 cut(s)	43, 148, 292, 436, 580, 724, 895, 1074, 1110
FauI	CCCGC	6 cut(s)	181, 325, 469, 613, 757, 1255
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	2 cut(s)	11, 1223
FokI	GGATG	1 cut(s)	965
Fsp4HI	GCNGC	2 cut(s)	11, 1223
FspBI	CTAG	1 cut(s)	1058
GlaI	GCGC	2 cut(s)	1056, 1212
GluI	GCNGC	2 cut(s)	11, 1223
GsuI	CTGGAG	1 cut(s)	1124
HaeIII	GGCC	2 cut(s)	906, 1266
HapII	CCGG	3 cut(s)	963, 1090, 1355
HgaI	GACGC	2 cut(s)	1306, 1360
HhaI	GCGC	2 cut(s)	1057, 1213
Hin1I	GRCGYC	2 cut(s)	1298, 1352
Hin1II	CATG	9 cut(s)	47, 152, 296, 440, 584, 728, 899, 1078, 1114
Hin6I	GCGC	2 cut(s)	1055, 1211
HinP1I	GCGC	2 cut(s)	1055, 1211
HincII	GTYRAC	5 cut(s)	129, 273, 417, 561, 705
HindII	GTYRAC	5 cut(s)	129, 273, 417, 561, 705
HinfI	GANTC	4 cut(s)	854, 931, 1190, 1386
HpaII	CCGG	3 cut(s)	963, 1090, 1355
HphI	GGTGA	6 cut(s)	155, 299, 443, 587, 731, 1033
Hpy166II	GTNNAC	6 cut(s)	129, 273, 417, 561, 705, 1051
Hpy188I	TCNGA	8 cut(s)	169, 313, 457, 601, 745, 853, 1187, 1396
Hpy188III	TCNNGA	1 cut(s)	1333
Hpy8I	GTNNAC	6 cut(s)	129, 273, 417, 561, 705, 1051
Hpy99I	CGWCG	2 cut(s)	1260, 1300
HpyAV	CCTTC	1 cut(s)	1315
HpyCH4III	ACNGT	8 cut(s)	41, 133, 277, 421, 565, 709, 921, 1125
HpyCH4IV	ACGT	7 cut(s)	174, 318, 462, 606, 750, 1328, 1338
HpyCH4V	TGCA	6 cut(s)	111, 255, 399, 543, 687, 831
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 329, 473, 617, 761, 1219, 1231
HpyF3I	CTNAG	1 cut(s)	1141
HpySE526I	ACGT	7 cut(s)	174, 318, 462, 606, 750, 1328, 1338
Hsp92I	GRCGYC	2 cut(s)	1298, 1352
Hsp92II	CATG	9 cut(s)	47, 152, 296, 440, 584, 728, 899, 1078, 1114
HspAI	GCGC	2 cut(s)	1055, 1211
Kzo9I	GATC	5 cut(s)	1023, 1044, 1080, 1116, 1216
LguI	GCTCTTC	1 cut(s)	1307
MaeI	CTAG	1 cut(s)	1058
MaeII	ACGT	7 cut(s)	174, 318, 462, 606, 750, 1328, 1338
MaeIII	GTNAC	6 cut(s)	143, 287, 431, 575, 719, 1130
MalI	GATC	5 cut(s)	1025, 1046, 1082, 1118, 1218
MbiI	CCGCTC	1 cut(s)	1262
MboI	GATC	5 cut(s)	1023, 1044, 1080, 1116, 1216
MboII	GAAGA	5 cut(s)	955, 1054, 1324, 1360, 1376
MflI	RGATCY	1 cut(s)	1216
MhlI	GDGCHC	1 cut(s)	1065
MlyI	GAGTC	2 cut(s)	848, 1395
MmeI	TCCRAC	3 cut(s)	1144, 1341, 1374
MseI	TTAA	2 cut(s)	23, 1305
MspI	CCGG	3 cut(s)	963, 1090, 1355
MspR9I	CCNGG	2 cut(s)	1091, 1103
MvaI	CCWGG	1 cut(s)	1103
MvnI	CGCG	2 cut(s)	1055, 1211
MwoI	GCNNNNNNNGC	7 cut(s)	185, 329, 473, 617, 761, 1219, 1231
NciI	CCSGG	1 cut(s)	1091
NdeII	GATC	5 cut(s)	1023, 1044, 1080, 1116, 1216
NlaIII	CATG	9 cut(s)	47, 152, 296, 440, 584, 728, 899, 1078, 1114
NlaIV	GGNNCC	2 cut(s)	1218, 1283
NmuCI	GTSAC	6 cut(s)	143, 287, 431, 575, 719, 1130
NspI	RCATGY	2 cut(s)	899, 1114
PciI	ACATGT	1 cut(s)	895
PciSI	GCTCTTC	1 cut(s)	1307
PfeI	GAWTC	2 cut(s)	931, 1190
PflMI	CCANNNNNTGG	1 cut(s)	1075
PkrI	GCNGC	2 cut(s)	12, 1224
PleI	GAGTC	2 cut(s)	848, 1394
PpsI	GAGTC	2 cut(s)	848, 1394
PscI	ACATGT	1 cut(s)	895
Psp6I	CCWGG	1 cut(s)	1101
PspEI	GGTNACC	5 cut(s)	143, 287, 431, 575, 719
PspGI	CCWGG	1 cut(s)	1101
PspN4I	GGNNCC	2 cut(s)	1218, 1283
PspPI	GGNCC	1 cut(s)	1264
PsuI	RGATCY	1 cut(s)	1216
SapI	GCTCTTC	1 cut(s)	1307
SaqAI	TTAA	2 cut(s)	23, 1305
SatI	GCNGC	2 cut(s)	11, 1223
Sau3AI	GATC	5 cut(s)	1023, 1044, 1080, 1116, 1216
Sau96I	GGNCC	1 cut(s)	1264
SchI	GAGTC	2 cut(s)	848, 1395
ScrFI	CCNGG	2 cut(s)	1091, 1103
SduI	GDGCHC	1 cut(s)	1065
SmlI	CTYRAG	1 cut(s)	1168
SmoI	CTYRAG	1 cut(s)	1168
SsiI	CCGC	9 cut(s)	188, 332, 476, 620, 764, 985, 1220, 1223, 1262
SspMI	CTAG	1 cut(s)	1058
StyD4I	CCNGG	2 cut(s)	1089, 1101
TaaI	ACNGT	8 cut(s)	41, 133, 277, 421, 565, 709, 921, 1125
TaiI	ACGT	7 cut(s)	177, 321, 465, 609, 753, 1331, 1341
TaqI	TCGA	2 cut(s)	934, 1151
TauI	GCSGC	1 cut(s)	1225
TfiI	GAWTC	2 cut(s)	931, 1190
Tru1I	TTAA	2 cut(s)	23, 1305
Tru9I	TTAA	2 cut(s)	23, 1305
TseFI	GTSAC	6 cut(s)	143, 287, 431, 575, 719, 1130
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	6 cut(s)	143, 287, 431, 575, 719, 1130
Van91I	CCANNNNNTGG	1 cut(s)	1075
XceI	RCATGY	2 cut(s)	899, 1114
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.