Rh2BG678700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018259
Physical Location & Seq
Reverse (-)
88890816 .. 88891404
589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG678700.1

Sequence Viewer

Length: 363 bp
ATGTTCTTGGCCTTGAAGGTCTGCTGTCAAGCAAGAATCAAGCAGAGAAAAAGAGATTTCCCGTTCTGGCGGCGACCTCATGGTCCTCCGCTACCGCCAAAACGACCGCGTTTTCTCCCAAACGGTGATCCGTTTCTATCTGGTGAAGATCGTCTGCGCGCTGGAGCACCTCCACAGCATGGGGATCGCTTACCAGGATTTGAAGCCGGAGAACATGCTGATCCAACAGGTCGCGTGACCCTCACGGACTTCCACCTTTCCAGAAGCCTCACGCACCTCCACAACCGGAGATCCGCCGCAAACACCGCAGGAACCTCACGCACTAGATCAGCATTATCAACGAGAACAACAAGGCCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.45

Weight (kDa)

11.71

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 179
AccII CGCG 3 cut(s) 109, 159, 234
AciI CCGC 7 cut(s) 70, 89, 95, 107, 294, 297, 306
AclWI GGATC 4 cut(s) 122, 192, 215, 285
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 16, 203
AjnI CCWGG 1 cut(s) 193
Alw21I GWGCWC 1 cut(s) 169
AlwI GGATC 4 cut(s) 122, 192, 215, 285
AoxI GGCC 2 cut(s) 9, 353
AspLEI GCGC 2 cut(s) 159, 161
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 137, 155
AvaII GGWCC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 169
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 357
BfaI CTAG 1 cut(s) 324
BisI GCNGC 2 cut(s) 71, 297
BlsI GCNGC 2 cut(s) 72, 298
Bme1390I CCNGG 2 cut(s) 195, 357
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 195, 357
BpmI CTGGAG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 179
BsePI GCGCGC 1 cut(s) 157
Bsh1236I CGCG 3 cut(s) 109, 159, 234
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 11, 355
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 3 cut(s) 207, 286, 356
BslI CCNNNNNNNGG 1 cut(s) 179
BsnI GGCC 2 cut(s) 11, 355
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 6 cut(s) 127, 148, 184, 220, 290, 326
BspACI CCGC 7 cut(s) 70, 89, 95, 107, 294, 297, 306
BspANI GGCC 2 cut(s) 11, 355
BspFNI CGCG 3 cut(s) 109, 159, 234
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 4 cut(s) 122, 192, 215, 285
BssHII GCGCGC 1 cut(s) 157
BssMI GATC 6 cut(s) 127, 148, 184, 220, 290, 326
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 159
BstFNI CGCG 3 cut(s) 109, 159, 234
BstHHI GCGC 2 cut(s) 159, 161
BstKTI GATC 6 cut(s) 130, 151, 187, 223, 293, 329
BstMBI GATC 6 cut(s) 127, 148, 184, 220, 290, 326
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 193, 355
BstUI CGCG 3 cut(s) 109, 159, 234
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 2 cut(s) 11, 355
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 2 cut(s) 159, 161
Cfr13I GGNCC 1 cut(s) 83
CviAII CATG 3 cut(s) 80, 179, 215
CviJI RGCY 4 cut(s) 11, 206, 267, 355
CviKI_1 RGCY 4 cut(s) 11, 206, 267, 355
DpnI GATC 6 cut(s) 129, 150, 186, 222, 292, 328
DpnII GATC 6 cut(s) 127, 148, 184, 220, 290, 326
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 83, 182, 218
FaiI YATR 3 cut(s) 81, 180, 216
FatI CATG 3 cut(s) 79, 178, 214
Fnu4HI GCNGC 2 cut(s) 71, 297
Fsp4HI GCNGC 2 cut(s) 71, 297
FspBI CTAG 1 cut(s) 324
GlaI GCGC 2 cut(s) 158, 160
GluI GCNGC 2 cut(s) 71, 297
GsuI CTGGAG 1 cut(s) 183
HaeIII GGCC 2 cut(s) 11, 355
HapII CCGG 3 cut(s) 207, 286, 356
HhaI GCGC 2 cut(s) 159, 161
Hin1II CATG 3 cut(s) 83, 182, 218
Hin6I GCGC 2 cut(s) 157, 159
HinP1I GCGC 2 cut(s) 157, 159
HinfI GANTC 1 cut(s) 36
HpaII CCGG 3 cut(s) 207, 286, 356
HphI GGTGA 2 cut(s) 137, 155
Hpy188III TCNNGA 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
Hsp92II CATG 3 cut(s) 83, 182, 218
HspAI GCGC 2 cut(s) 157, 159
Kzo9I GATC 6 cut(s) 127, 148, 184, 220, 290, 326
LmnI GCTCC 1 cut(s) 164
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 235
MalI GATC 6 cut(s) 129, 150, 186, 222, 292, 328
MboI GATC 6 cut(s) 127, 148, 184, 220, 290, 326
MboII GAAGA 1 cut(s) 158
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 7 cut(s) 87, 96, 180, 251, 278, 287, 325
MspI CCGG 3 cut(s) 207, 286, 356
MspR9I CCNGG 2 cut(s) 195, 357
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 3 cut(s) 109, 159, 234
MwoI GCNNNNNNNGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 357
NdeII GATC 6 cut(s) 127, 148, 184, 220, 290, 326
NlaIII CATG 3 cut(s) 83, 182, 218
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 218
PauI GCGCGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 36
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 2 cut(s) 72, 298
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 290
PteI GCGCGC 1 cut(s) 157
SatI GCNGC 2 cut(s) 71, 297
Sau3AI GATC 6 cut(s) 127, 148, 184, 220, 290, 326
Sau96I GGNCC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 195, 357
SduI GDGCHC 1 cut(s) 169
SetI ASST 7 cut(s) 21, 79, 172, 232, 258, 279, 317
SinI GGWCC 1 cut(s) 83
SsiI CCGC 7 cut(s) 70, 89, 95, 107, 294, 297, 306
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 193, 355
TaaI ACNGT 1 cut(s) 125
TauI GCSGC 2 cut(s) 73, 299
TfiI GAWTC 1 cut(s) 36
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspGWI ACGGA 2 cut(s) 120, 260
Van91I CCANNNNNTGG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 83
XceI RCATGY 1 cut(s) 218
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.