Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018259

Physical Location & Seq

Genomic Coordinates Reverse (-)

64305147 .. 64305533

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG393800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGAAAGATTGACATTCATGTTCTTGGTCTTGAAGCTCTGCTGTCAACCAAGAATCGAGCAGAGAATAGAGTGATTTCCCGTTCCGGCGGCGACCTCAACGTCCTCCGCTACCGCCAAAACGACCGCGTTTTCTCCCAAACGGTGATCCGTTTCTATCTGACGAAGATCGTCTGCGCGCTGGAGCACCTCCACAACATGGGGATCGCTTACCGGGATTTGAAGCCGGAGAACATGTTGATGCAACATTTGGGTCACGTGACCCTCACGGACTTCGACCTTTCCAGAAGCCTCAAGCGCCTCCACAGCCGGAGATCCGCCGCAAACACCGCAGGAACCTCACGCGCTGGATCAGCATTATCAACGAGAACAACAAGGCTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

128

Amino Acids

14.4

Weight (kDa)

10.85

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	31 - 106	8.2e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	37 - 108	1.3e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018259)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000002 Rmu_sc0007014.1_g000003
rosa_samantha	Rh1CG033400 Rh2AG271600 Rh2AG510100 Rh2AG667200 Rh2BG678700 Rh2CG495300 Rh4BG379400 Rh4CG393800 Rh4DG131900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccII	CGCG	3 cut(s)	129, 179, 345
AciI	CCGC	7 cut(s)	90, 109, 115, 127, 318, 321, 330
AclWI	GGATC	4 cut(s)	142, 212, 309, 358
AcvI	CACGTG	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	35, 223
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	4 cut(s)	142, 212, 309, 358
AspLEI	GCGC	4 cut(s)	179, 181, 300, 347
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	157
BbrPI	CACGTG	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	2 cut(s)	91, 321
BlsI	GCNGC	2 cut(s)	92, 322
Bme1390I	CCNGG	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	199
BsePI	GCGCGC	1 cut(s)	177
BseYI	CCCAGC	1 cut(s)	379
Bsh1236I	CGCG	3 cut(s)	129, 179, 345
Bsh1285I	CGRYCG	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	4 cut(s)	87, 214, 227, 310
BslI	CCNNNNNNNGG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	147, 168, 204, 314, 350
BspACI	CCGC	7 cut(s)	90, 109, 115, 127, 318, 321, 330
BspFNI	CGCG	3 cut(s)	129, 179, 345
BspLI	GGNNCC	1 cut(s)	337
BspPI	GGATC	4 cut(s)	142, 212, 309, 358
BssHII	GCGCGC	1 cut(s)	177
BssMI	GATC	5 cut(s)	147, 168, 204, 314, 350
Bst4CI	ACNGT	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	179
BstFNI	CGCG	3 cut(s)	129, 179, 345
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	4 cut(s)	179, 181, 300, 347
BstKTI	GATC	5 cut(s)	150, 171, 207, 317, 353
BstMBI	GATC	5 cut(s)	147, 168, 204, 314, 350
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	297, 306, 329, 353
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	213
BstUI	CGCG	3 cut(s)	129, 179, 345
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	4 cut(s)	179, 181, 300, 347
CviAII	CATG	3 cut(s)	20, 199, 235
CviJI	RGCY	5 cut(s)	38, 226, 291, 309, 379
CviKI_1	RGCY	5 cut(s)	38, 226, 291, 309, 379
DpnI	GATC	5 cut(s)	149, 170, 206, 316, 352
DpnII	GATC	5 cut(s)	147, 168, 204, 314, 350
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	307
Eco72I	CACGTG	1 cut(s)	259
FaeI	CATG	3 cut(s)	23, 202, 238
FaiI	YATR	3 cut(s)	21, 200, 236
FatI	CATG	3 cut(s)	19, 198, 234
Fnu4HI	GCNGC	2 cut(s)	91, 321
Fsp4HI	GCNGC	2 cut(s)	91, 321
GlaI	GCGC	4 cut(s)	178, 180, 299, 346
GluI	GCNGC	2 cut(s)	91, 321
GsaI	CCCAGC	1 cut(s)	383
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	301
HapII	CCGG	4 cut(s)	87, 214, 227, 310
HhaI	GCGC	4 cut(s)	179, 181, 300, 347
Hin1II	CATG	3 cut(s)	23, 202, 238
Hin6I	GCGC	4 cut(s)	177, 179, 298, 345
HinP1I	GCGC	4 cut(s)	177, 179, 298, 345
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	4 cut(s)	87, 214, 227, 310
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	2 cut(s)	32, 285
Hpy8I	GTNNAC	1 cut(s)	48
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	102, 258
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	297, 306, 329, 353
HpySE526I	ACGT	2 cut(s)	102, 258
Hsp92II	CATG	3 cut(s)	23, 202, 238
HspAI	GCGC	4 cut(s)	177, 179, 298, 345
Kzo9I	GATC	5 cut(s)	147, 168, 204, 314, 350
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	9 cut(s)	100, 167, 227, 240, 298, 318, 323, 333, 365
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	2 cut(s)	102, 258
MaeIII	GTNAC	2 cut(s)	254, 259
MalI	GATC	5 cut(s)	149, 170, 206, 316, 352
MboI	GATC	5 cut(s)	147, 168, 204, 314, 350
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	189
MnlI	CCTC	7 cut(s)	107, 116, 200, 275, 302, 311, 349
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	4 cut(s)	87, 214, 227, 310
MspR9I	CCNGG	1 cut(s)	215
MvnI	CGCG	3 cut(s)	129, 179, 345
MwoI	GCNNNNNNNGC	4 cut(s)	297, 306, 329, 353
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	5 cut(s)	147, 168, 204, 314, 350
NlaIII	CATG	3 cut(s)	23, 202, 238
NlaIV	GGNNCC	1 cut(s)	337
NmuCI	GTSAC	2 cut(s)	254, 259
NspI	RCATGY	1 cut(s)	238
PauI	GCGCGC	1 cut(s)	177
PciI	ACATGT	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	92, 322
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	259
PscI	ACATGT	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	314
PteI	GCGCGC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	2 cut(s)	91, 321
Sau3AI	GATC	5 cut(s)	147, 168, 204, 314, 350
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	7 cut(s)	40, 99, 105, 192, 261, 282, 341
SfaNI	GCATC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	7 cut(s)	90, 109, 115, 127, 318, 321, 330
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	105, 261
TaqI	TCGA	2 cut(s)	58, 276
TauI	GCSGC	2 cut(s)	93, 323
TfiI	GAWTC	1 cut(s)	55
TseFI	GTSAC	2 cut(s)	254, 259
Tsp45I	GTSAC	2 cut(s)	254, 259
TspDTI	ATGAA	1 cut(s)	8
TspGWI	ACGGA	2 cut(s)	140, 284
Van91I	CCANNNNNTGG	1 cut(s)	199
XceI	RCATGY	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.