Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0018259

Physical Location & Seq

Genomic Coordinates Reverse (-)

22242498 .. 22243682

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG131900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGATCCATTTCTATTTGGCGAAGATAGTCTACGCGCTGGAGCACCTCCACAGCATGGGGATCGCTTACCGGGATTTGAAGCTGGAGAACATGCTGATCCAACAGTCGGGTCACTTGCCCTCAGGGACTTCGACCTTTCCAAAAGCCTCAAGCACCTCCACAGCCGGAGATTCGCCACAAGAACCTCACGCGCTGGATCCGCCGCAAACACCGCAAGAACTTCAAGCACCTCAACGGCGAGCGGGCCAACTTGTTCGTCGGCACCGAGGAGTACGTGTCCCCCGAGGTCGTCCGCGGCGAGGATCACGAGTTCGCCGTGGACTGGTGGGCCTAGGGATTCTCACCTACAAGTGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

13.39

Weight (kDa)

11.11

Isoelectric Point (pI)

66.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 40	3.5e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018259)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000002 Rmu_sc0007014.1_g000003
rosa_samantha	Rh1CG033400 Rh2AG271600 Rh2AG510100 Rh2AG667200 Rh2BG678700 Rh2CG495300 Rh4BG379400 Rh4CG393800 Rh4DG131900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	3 cut(s)	38, 194, 298
AciI	CCGC	6 cut(s)	203, 206, 215, 245, 296, 298
AclWI	GGATC	5 cut(s)	71, 94, 194, 207, 313
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	4 cut(s)	58, 109, 302, 325
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	82, 227
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	5 cut(s)	71, 94, 194, 207, 313
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	2 cut(s)	247, 331
AspA2I	CCTAGG	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	40, 196
AspS9I	GGNCC	2 cut(s)	247, 331
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	16, 337
AvaI	CYCGRG	1 cut(s)	285
AvrII	CCTAGG	1 cut(s)	334
AxyI	CCTNAGG	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	264
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BauI	CACGAG	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	48
BceAI	ACGGC	2 cut(s)	254, 303
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BcnI	CCSGG	1 cut(s)	74
BfaI	CTAG	2 cut(s)	335, 361
BisI	GCNGC	2 cut(s)	206, 299
BlnI	CCTAGG	1 cut(s)	334
BlsI	GCNGC	2 cut(s)	207, 300
Bme1390I	CCNGG	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	247, 331
BmiI	GGNNCC	2 cut(s)	201, 266
BmrFI	CCNGG	1 cut(s)	74
BpmI	CTGGAG	2 cut(s)	62, 107
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	5 cut(s)	268, 286, 296, 319, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 109, 302, 325
Bse1I	ACTGG	1 cut(s)	330
Bse21I	CCTNAGG	1 cut(s)	124
BseDI	CCNNGG	5 cut(s)	268, 286, 296, 319, 334
BseLI	CCNNNNNNNGG	4 cut(s)	58, 109, 302, 325
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	285
Bsh1236I	CGCG	3 cut(s)	38, 194, 298
BshFI	GGCC	2 cut(s)	249, 333
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	73, 168
BslFI	GGGAC	2 cut(s)	142, 266
BslI	CCNNNNNNNGG	4 cut(s)	58, 109, 302, 325
BsmFI	GGGAC	2 cut(s)	142, 266
BsnI	GGCC	2 cut(s)	249, 333
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	6, 63, 99, 199, 305
BspACI	CCGC	6 cut(s)	203, 206, 215, 245, 296, 298
BspANI	GGCC	2 cut(s)	249, 333
BspCNI	CTCAG	1 cut(s)	137
BspFNI	CGCG	3 cut(s)	38, 194, 298
BspLI	GGNNCC	2 cut(s)	201, 266
BspPI	GGATC	5 cut(s)	71, 94, 194, 207, 313
BspT107I	GGYRCC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	5 cut(s)	268, 286, 296, 319, 334
BssMI	GATC	5 cut(s)	6, 63, 99, 199, 305
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	334
Bst2BI	CACGAG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	243, 247
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	2 cut(s)	296, 319
BstFNI	CGCG	3 cut(s)	38, 194, 298
BstHHI	GCGC	2 cut(s)	40, 196
BstKTI	GATC	5 cut(s)	9, 66, 102, 202, 308
BstMBI	GATC	5 cut(s)	6, 63, 99, 199, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 214
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	72
BstUI	CGCG	3 cut(s)	38, 194, 298
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
Bsu36I	CCTNAGG	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	249, 333
BtgI	CCRYGG	2 cut(s)	296, 319
Cac8I	GCNNGC	2 cut(s)	243, 247
CfoI	GCGC	2 cut(s)	40, 196
Cfr13I	GGNCC	2 cut(s)	247, 331
Cfr42I	CCGCGG	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	2 cut(s)	58, 94
CviJI	RGCY	5 cut(s)	85, 149, 167, 249, 333
CviKI_1	RGCY	5 cut(s)	85, 149, 167, 249, 333
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	5 cut(s)	8, 65, 101, 201, 307
DpnII	GATC	5 cut(s)	6, 63, 99, 199, 305
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	334
Eco81I	CCTNAGG	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	61, 97
FaiI	YATR	2 cut(s)	59, 95
FaqI	GGGAC	2 cut(s)	142, 266
FatI	CATG	2 cut(s)	57, 93
FauI	CCCGC	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	206, 299
Fsp4HI	GCNGC	2 cut(s)	206, 299
FspBI	CTAG	2 cut(s)	335, 361
GlaI	GCGC	2 cut(s)	39, 195
GluI	GCNGC	2 cut(s)	206, 299
GsuI	CTGGAG	2 cut(s)	62, 107
HaeIII	GGCC	2 cut(s)	249, 333
HapII	CCGG	2 cut(s)	73, 168
HhaI	GCGC	2 cut(s)	40, 196
Hin1II	CATG	2 cut(s)	61, 97
Hin6I	GCGC	2 cut(s)	38, 194
HinP1I	GCGC	2 cut(s)	38, 194
HinfI	GANTC	2 cut(s)	173, 340
HpaII	CCGG	2 cut(s)	73, 168
HphI	GGTGA	2 cut(s)	16, 337
Hpy166II	GTNNAC	2 cut(s)	34, 323
Hpy188III	TCNNGA	1 cut(s)	309
Hpy8I	GTNNAC	2 cut(s)	34, 323
Hpy99I	CGWCG	1 cut(s)	264
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 214
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	61, 97
HspAI	GCGC	2 cut(s)	38, 194
KspI	CCGCGG	1 cut(s)	299
Kzo9I	GATC	5 cut(s)	6, 63, 99, 199, 305
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	7 cut(s)	26, 71, 86, 111, 181, 182, 311
MaeI	CTAG	2 cut(s)	335, 361
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	5 cut(s)	8, 65, 101, 201, 307
MbiI	CCGCTC	1 cut(s)	245
MboI	GATC	5 cut(s)	6, 63, 99, 199, 305
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	9 cut(s)	59, 133, 160, 169, 198, 243, 263, 281, 296
MspA1I	CMGCKG	1 cut(s)	298
MspI	CCGG	2 cut(s)	73, 168
MspR9I	CCNGG	1 cut(s)	74
MvnI	CGCG	3 cut(s)	38, 194, 298
MwoI	GCNNNNNNNGC	2 cut(s)	202, 214
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	5 cut(s)	6, 63, 99, 199, 305
NlaIII	CATG	2 cut(s)	61, 97
NlaIV	GGNNCC	2 cut(s)	201, 266
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	4 cut(s)	265, 283, 298, 316
PfeI	GAWTC	2 cut(s)	173, 340
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	207, 300
Ppu21I	YACGTR	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	201, 266
PspPI	GGNCC	2 cut(s)	247, 331
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SacII	CCGCGG	1 cut(s)	299
SatI	GCNGC	2 cut(s)	206, 299
Sau3AI	GATC	5 cut(s)	6, 63, 99, 199, 305
Sau96I	GGNCC	2 cut(s)	247, 331
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	9 cut(s)	51, 87, 140, 161, 190, 235, 280, 292, 350
Sfr303I	CCGCGG	1 cut(s)	299
SgrBI	CCGCGG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
SsiI	CCGC	6 cut(s)	203, 206, 215, 245, 296, 298
SspMI	CTAG	2 cut(s)	335, 361
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	134
TauI	GCSGC	2 cut(s)	208, 301
TfiI	GAWTC	2 cut(s)	173, 340
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
Van91I	CCANNNNNTGG	1 cut(s)	58
XceI	RCATGY	1 cut(s)	97
XmaJI	CCTAGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	2 cut(s)	335, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.