Rh2CG495300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018259
Physical Location & Seq
Reverse (-)
66576335 .. 66576676
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG495300.1

Sequence Viewer

Length: 342 bp
ATGGGAAAGATTGGCATACATGTTCTTGGCCTTGAAGCTCTGCTGTCAAGCAAAGAATCAAGAGAAGAGAGCGATTTCCCGTTCTGGTGGCGACCTCAATGTCCTCTGTTACTGCCAAAACGACCGCGTTTTCTCCCAAACGGTGATCCGTTTCTATCTGGTGAAGATCGTCTGCGCGCTGGAGCACCTCCACAGCATGGGGATCGCTTACCGAGATTTGAAACCGGAGAACATGTTGATCCAACATTCGGGTCACGTGACCCTCACGGACTTCGACCTTTCCAGAAGCCTCAAGCACCTCCACAGCCGGAGATCCGCATCAAACACTGCAGGCCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

9.23

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 197
AccII CGCG 2 cut(s) 127, 177
AciI CCGC 2 cut(s) 125, 316
AclWI GGATC 4 cut(s) 140, 210, 233, 307
AcvI CACGTG 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 197, 248
AflIII ACRYGT 2 cut(s) 19, 232
AgsI TTSAA 2 cut(s) 35, 221
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 187
AlwI GGATC 4 cut(s) 140, 210, 233, 307
AoxI GGCC 2 cut(s) 28, 332
AspLEI GCGC 2 cut(s) 177, 179
AsuHPI GGTGA 2 cut(s) 155, 173
BbrPI CACGTG 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 276
BsaAI YACGTR 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 248
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 1 cut(s) 336
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 2 cut(s) 197, 248
BsePI GCGCGC 1 cut(s) 175
Bsh1236I CGCG 2 cut(s) 127, 177
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 2 cut(s) 30, 334
BsiEI CGRYCG 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 225, 308
BslI CCNNNNNNNGG 2 cut(s) 197, 248
BsnI GGCC 2 cut(s) 30, 334
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 5 cut(s) 145, 166, 202, 238, 312
BspACI CCGC 2 cut(s) 125, 316
BspANI GGCC 2 cut(s) 30, 334
BspFNI CGCG 2 cut(s) 127, 177
BspMAI CTGCAG 1 cut(s) 332
BspPI GGATC 4 cut(s) 140, 210, 233, 307
BssHII GCGCGC 1 cut(s) 175
BssMI GATC 5 cut(s) 145, 166, 202, 238, 312
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 177, 332
BstFNI CGCG 2 cut(s) 127, 177
BstHHI GCGC 2 cut(s) 177, 179
BstKTI GATC 5 cut(s) 148, 169, 205, 241, 315
BstMBI GATC 5 cut(s) 145, 166, 202, 238, 312
BstMCI CGRYCG 1 cut(s) 125
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 2 cut(s) 23, 236
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 328
BstUI CGCG 2 cut(s) 127, 177
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 2 cut(s) 30, 334
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 177, 332
CfoI GCGC 2 cut(s) 177, 179
CviAII CATG 3 cut(s) 20, 197, 233
CviJI RGCY 5 cut(s) 30, 38, 289, 307, 334
CviKI_1 RGCY 5 cut(s) 30, 38, 289, 307, 334
DpnI GATC 5 cut(s) 147, 168, 204, 240, 314
DpnII GATC 5 cut(s) 145, 166, 202, 238, 312
DrdI GACNNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco72I CACGTG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 3 cut(s) 23, 200, 236
FaiI YATR 4 cut(s) 17, 21, 198, 234
FatI CATG 3 cut(s) 19, 196, 232
GlaI GCGC 2 cut(s) 176, 178
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 2 cut(s) 30, 334
HapII CCGG 2 cut(s) 225, 308
HhaI GCGC 2 cut(s) 177, 179
Hin1II CATG 3 cut(s) 23, 200, 236
Hin6I GCGC 2 cut(s) 175, 177
HinP1I GCGC 2 cut(s) 175, 177
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 225, 308
HphI GGTGA 2 cut(s) 155, 173
Hpy188III TCNNGA 2 cut(s) 60, 283
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 3 cut(s) 23, 200, 236
HspAI GCGC 2 cut(s) 175, 177
Kzo9I GATC 5 cut(s) 145, 166, 202, 238, 312
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 70, 144, 165, 238, 296, 316, 321, 321
LweI GCATC 1 cut(s) 327
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 3 cut(s) 108, 252, 257
MalI GATC 5 cut(s) 147, 168, 204, 240, 314
MboI GATC 5 cut(s) 145, 166, 202, 238, 312
MboII GAAGA 2 cut(s) 77, 176
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 6 cut(s) 105, 114, 198, 273, 300, 309
MspI CCGG 2 cut(s) 225, 308
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 2 cut(s) 127, 177
NdeII GATC 5 cut(s) 145, 166, 202, 238, 312
NlaIII CATG 3 cut(s) 23, 200, 236
NmuCI GTSAC 2 cut(s) 252, 257
NspI RCATGY 2 cut(s) 23, 236
PauI GCGCGC 1 cut(s) 175
PciI ACATGT 2 cut(s) 19, 232
PfeI GAWTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 197
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 257
PscI ACATGT 2 cut(s) 19, 232
Psp6I CCWGG 1 cut(s) 334
PspCI CACGTG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 334
PstI CTGCAG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 312
PteI GCGCGC 1 cut(s) 175
Sau3AI GATC 5 cut(s) 145, 166, 202, 238, 312
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 187
SetI ASST 7 cut(s) 40, 97, 190, 259, 280, 301, 340
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
SsiI CCGC 2 cut(s) 125, 316
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 274
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 2 cut(s) 252, 257
Tsp45I GTSAC 2 cut(s) 252, 257
TspGWI ACGGA 2 cut(s) 138, 282
TspRI CASTG 1 cut(s) 332
Van91I CCANNNNNTGG 1 cut(s) 197
XceI RCATGY 2 cut(s) 23, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.