Rh4BG379400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018259
Physical Location & Seq
Reverse (-)
53403620 .. 53403808
189 bp
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UTR
Exon/CDS
Intron
Rh4BG379400.1

Sequence Viewer

Length: 189 bp
ATGGGGATCGCTTACCGGGATTTGAAGCCGGAGAACATGTTGATGCAACATTTGGGTCACGTGACCCTCACGGACTTCGACCTTTCCAGAAGCCTCAAGCGCCTCCACAGCCGGAGATCCGCCGCAAACACCGCAGGAACCTCACGCGCTGGATCAGCATTATCAACGAGAACAACAAGGCTGGGTTGA

Protein Analysis

62

Amino Acids

6.83

Weight (kDa)

11.55

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 44 1.5e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 147
AciI CCGC 3 cut(s) 120, 123, 132
AclWI GGATC 3 cut(s) 14, 111, 160
AcvI CACGTG 1 cut(s) 61
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 25
AlwI GGATC 3 cut(s) 14, 111, 160
AspLEI GCGC 2 cut(s) 102, 149
AsuC2I CCSGG 1 cut(s) 17
BbrPI CACGTG 1 cut(s) 61
BcnI CCSGG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 147
BsiSI CCGG 3 cut(s) 16, 29, 112
Bsp143I GATC 3 cut(s) 6, 116, 152
BspACI CCGC 3 cut(s) 120, 123, 132
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 3 cut(s) 14, 111, 160
BssMI GATC 3 cut(s) 6, 116, 152
BstBAI YACGTR 1 cut(s) 61
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 2 cut(s) 102, 149
BstKTI GATC 3 cut(s) 9, 119, 155
BstMBI GATC 3 cut(s) 6, 116, 152
BstMWI GCNNNNNNNGC 4 cut(s) 99, 108, 131, 155
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 15
BstUI CGCG 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
CfoI GCGC 2 cut(s) 102, 149
CviAII CATG 1 cut(s) 37
CviJI RGCY 4 cut(s) 28, 93, 111, 181
CviKI_1 RGCY 4 cut(s) 28, 93, 111, 181
DpnI GATC 3 cut(s) 8, 118, 154
DpnII GATC 3 cut(s) 6, 116, 152
EciI GGCGGA 1 cut(s) 109
Eco72I CACGTG 1 cut(s) 61
FaeI CATG 1 cut(s) 40
FaiI YATR 1 cut(s) 38
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GlaI GCGC 2 cut(s) 101, 148
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 103
HapII CCGG 3 cut(s) 16, 29, 112
HhaI GCGC 2 cut(s) 102, 149
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 2 cut(s) 100, 147
HinP1I GCGC 2 cut(s) 100, 147
HpaII CCGG 3 cut(s) 16, 29, 112
Hpy188III TCNNGA 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 108, 131, 155
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 2 cut(s) 100, 147
Kzo9I GATC 3 cut(s) 6, 116, 152
LpnPI CCDG 7 cut(s) 29, 42, 100, 120, 125, 135, 167
LweI GCATC 1 cut(s) 33
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 56, 61
MalI GATC 3 cut(s) 8, 118, 154
MboI GATC 3 cut(s) 6, 116, 152
MflI RGATCY 1 cut(s) 116
MnlI CCTC 4 cut(s) 77, 104, 113, 151
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 3 cut(s) 16, 29, 112
MspR9I CCNGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 4 cut(s) 99, 108, 131, 155
NciI CCSGG 1 cut(s) 17
NdeII GATC 3 cut(s) 6, 116, 152
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 2 cut(s) 56, 61
NspI RCATGY 1 cut(s) 40
PciI ACATGT 1 cut(s) 36
PkrI GCNGC 1 cut(s) 124
PmaCI CACGTG 1 cut(s) 61
PmlI CACGTG 1 cut(s) 61
Ppu21I YACGTR 1 cut(s) 61
PscI ACATGT 1 cut(s) 36
PspCI CACGTG 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 3 cut(s) 6, 116, 152
ScrFI CCNGG 1 cut(s) 17
SetI ASST 3 cut(s) 63, 84, 143
SfaNI GCATC 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SsiI CCGC 3 cut(s) 120, 123, 132
StyD4I CCNGG 1 cut(s) 15
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 78
TauI GCSGC 1 cut(s) 125
TseFI GTSAC 2 cut(s) 56, 61
Tsp45I GTSAC 2 cut(s) 56, 61
TspGWI ACGGA 1 cut(s) 86
XceI RCATGY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.