Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018259

Physical Location & Seq

Genomic Coordinates Forward (+)

6368643 .. 6368882

Gene Structure 240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG033400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGGATCACTTACCGAGATTTGAAACCGGAGAACATGTTGATCCAACATTCGGGTCACATGACCCTCACGGACTTCGACCTTTCCAGAAGCCTCAAGCACCTCCACAGCCGGAGATCCGCCGCAAACACTGCAGGCCAGGTTGAAGAAGGCCAAGTCTGCCCTGGTCAACCCGATCAGTTGCCGCAAACCGAGCTTCTCCGACAACGGCGAGCCGACCAACTCGTTCGTCAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

79

Amino Acids

9.04

Weight (kDa)

8.03

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 43	9.7e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018259)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000002 Rmu_sc0007014.1_g000003
rosa_samantha	Rh1CG033400 Rh2AG271600 Rh2AG510100 Rh2AG667200 Rh2BG678700 Rh2CG495300 Rh4BG379400 Rh4CG393800 Rh4DG131900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	120, 123, 185
AclWI	GGATC	3 cut(s)	14, 37, 111
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	25, 146
AjnI	CCWGG	2 cut(s)	138, 163
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
AlwI	GGATC	3 cut(s)	14, 37, 111
AoxI	GGCC	2 cut(s)	136, 151
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	140, 165
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	123, 185
BlsI	GCNGC	2 cut(s)	124, 186
Bme1390I	CCNGG	2 cut(s)	140, 165
BmrFI	CCNGG	2 cut(s)	140, 165
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	140, 165
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	138, 153
BsiSI	CCGG	2 cut(s)	29, 112
BslI	CCNNNNNNNGG	1 cut(s)	52
BsnI	GGCC	2 cut(s)	138, 153
Bsp143I	GATC	4 cut(s)	6, 42, 116, 175
BspACI	CCGC	3 cut(s)	120, 123, 185
BspANI	GGCC	2 cut(s)	138, 153
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	3 cut(s)	14, 37, 111
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	6, 42, 116, 175
Bst2UI	CCWGG	2 cut(s)	140, 165
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	136, 213
BstKTI	GATC	4 cut(s)	9, 45, 119, 178
BstMBI	GATC	4 cut(s)	6, 42, 116, 175
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 159, 193
BstNI	CCWGG	2 cut(s)	140, 165
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	138, 163
BstSFI	CTRYAG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	138, 153
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	129, 235
Cac8I	GCNNGC	2 cut(s)	136, 213
CviAII	CATG	2 cut(s)	37, 61
CviJI	RGCY	6 cut(s)	93, 111, 138, 153, 196, 215
CviKI_1	RGCY	6 cut(s)	93, 111, 138, 153, 196, 215
DpnI	GATC	4 cut(s)	8, 44, 118, 177
DpnII	GATC	4 cut(s)	6, 42, 116, 175
EciI	GGCGGA	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	138, 163
FaeI	CATG	2 cut(s)	40, 64
FaiI	YATR	2 cut(s)	38, 62
FatI	CATG	2 cut(s)	36, 60
Fnu4HI	GCNGC	2 cut(s)	123, 185
Fsp4HI	GCNGC	2 cut(s)	123, 185
GluI	GCNGC	2 cut(s)	123, 185
HaeIII	GGCC	2 cut(s)	138, 153
HapII	CCGG	2 cut(s)	29, 112
Hin1II	CATG	2 cut(s)	40, 64
HincII	GTYRAC	2 cut(s)	170, 233
HindII	GTYRAC	2 cut(s)	170, 233
HpaII	CCGG	2 cut(s)	29, 112
Hpy166II	GTNNAC	2 cut(s)	170, 233
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	2 cut(s)	170, 233
HpyAV	CCTTC	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 159, 193
Hsp92II	CATG	2 cut(s)	40, 64
Kzo9I	GATC	4 cut(s)	6, 42, 116, 175
LpnPI	CCDG	8 cut(s)	42, 100, 120, 125, 125, 150, 152, 177
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	4 cut(s)	8, 44, 118, 177
MboI	GATC	4 cut(s)	6, 42, 116, 175
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	70, 226
MnlI	CCTC	3 cut(s)	77, 104, 113
MspI	CCGG	2 cut(s)	29, 112
MspR9I	CCNGG	2 cut(s)	140, 165
MvaI	CCWGG	2 cut(s)	140, 165
MwoI	GCNNNNNNNGC	3 cut(s)	131, 159, 193
NdeII	GATC	4 cut(s)	6, 42, 116, 175
NlaIII	CATG	2 cut(s)	40, 64
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	40
PciI	ACATGT	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	124, 186
PscI	ACATGT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	138, 163
PspGI	CCWGG	2 cut(s)	138, 163
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	116
SatI	GCNGC	2 cut(s)	123, 185
Sau3AI	GATC	4 cut(s)	6, 42, 116, 175
ScrFI	CCNGG	2 cut(s)	140, 165
SetI	ASST	4 cut(s)	84, 105, 144, 198
SfcI	CTRYAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	3 cut(s)	120, 123, 185
StyD4I	CCNGG	2 cut(s)	138, 163
TaqI	TCGA	1 cut(s)	78
TauI	GCSGC	2 cut(s)	125, 187
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	136
XceI	RCATGY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.