Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018259

Physical Location & Seq

Genomic Coordinates Reverse (-)

32336559 .. 32337029

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG271600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTCTTGGCCTTGAAGCTCTACTGTCAAGCAAAGAATCAAGAGAACAGAGCGATTTCCCGTTCTGGCGGCGACCTCAATGTCCTCCGCTACTGCCAAAACGACCGCGTTTTCTCCCAAACGGTGATCCGTTTCTATCTGGCGAAGATCGTCTGCGCGCTGGAGCACCTCCACAGCATGGGGATCGCTTACCGAGATTTGAAACAGGAGAACATGTTGATCCAACATTCGGGTCACGTGACCCTCACGGACTTCGACCTTTCCAGAAGCCTCAAGCACCACCACAGCCGGAGATCCGCCGCAAACACTGCAGGCCAGGTTGAAGAAGGCCAAGTCTGCCCTGGTCAACCCGATCAGTTGCCGCAAACCGAGCTTCTCCGACAACGGCGAGCCGGCCAACTCGTTCGTCAACACCGAGGAGTGCGTGTCCCCCGAGGTCGTCTGCGGAGAGGGTCACGAGTTCACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

156

Amino Acids

17.96

Weight (kDa)

10.81

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 103	1.9e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 102	6.1e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018259)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000002 Rmu_sc0007014.1_g000003
rosa_samantha	Rh1CG033400 Rh2AG271600 Rh2AG510100 Rh2AG667200 Rh2BG678700 Rh2CG495300 Rh4BG379400 Rh4CG393800 Rh4DG131900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccII	CGCG	2 cut(s)	108, 158
AciI	CCGC	7 cut(s)	69, 88, 106, 297, 300, 362, 445
AclWI	GGATC	4 cut(s)	121, 191, 214, 288
AcoI	YGGCCR	1 cut(s)	394
AcvI	CACGTG	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	178, 229
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	3 cut(s)	16, 202, 323
AjnI	CCWGG	2 cut(s)	315, 340
AluBI	AGCT	2 cut(s)	19, 373
AluI	AGCT	2 cut(s)	19, 373
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	4 cut(s)	121, 191, 214, 288
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	4 cut(s)	9, 313, 328, 394
AspLEI	GCGC	2 cut(s)	158, 160
AsuHPI	GGTGA	2 cut(s)	136, 455
AvaI	CYCGRG	1 cut(s)	432
BauI	CACGAG	1 cut(s)	456
BbrPI	CACGTG	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	401
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	2 cut(s)	317, 342
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	3 cut(s)	70, 300, 362
BlsI	GCNGC	3 cut(s)	71, 301, 363
Bme1390I	CCNGG	2 cut(s)	317, 342
BmeT110I	CYCGRG	1 cut(s)	432
BmrFI	CCNGG	2 cut(s)	317, 342
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	340, 415, 433
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 229
Bse118I	RCCGGY	1 cut(s)	392
BseBI	CCWGG	2 cut(s)	317, 342
BseDI	CCNNGG	3 cut(s)	340, 415, 433
BseLI	CCNNNNNNNGG	2 cut(s)	178, 229
BsePI	GCGCGC	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	432
Bsh1236I	CGCG	2 cut(s)	108, 158
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	11, 315, 330, 396
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	289, 393
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	178, 229
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	4 cut(s)	11, 315, 330, 396
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	126, 147, 183, 219, 293, 352
BspACI	CCGC	7 cut(s)	69, 88, 106, 297, 300, 362, 445
BspANI	GGCC	4 cut(s)	11, 315, 330, 396
BspFNI	CGCG	2 cut(s)	108, 158
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	4 cut(s)	121, 191, 214, 288
BsrFI	RCCGGY	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	340, 415, 433
BssHII	GCGCGC	1 cut(s)	156
BssMI	GATC	6 cut(s)	126, 147, 183, 219, 293, 352
BssSI	CACGAG	1 cut(s)	456
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	317, 342
Bst4CI	ACNGT	3 cut(s)	26, 124, 467
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	4 cut(s)	158, 313, 390, 394
BstFNI	CGCG	2 cut(s)	108, 158
BstHHI	GCGC	2 cut(s)	158, 160
BstKTI	GATC	6 cut(s)	129, 150, 186, 222, 296, 355
BstMBI	GATC	6 cut(s)	126, 147, 183, 219, 293, 352
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 336, 370
BstNI	CCWGG	2 cut(s)	317, 342
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	315, 340
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	2 cut(s)	108, 158
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	4 cut(s)	11, 315, 330, 396
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	4 cut(s)	158, 313, 390, 394
CfoI	GCGC	2 cut(s)	158, 160
Cfr10I	RCCGGY	1 cut(s)	392
CviAII	CATG	2 cut(s)	178, 214
CviJI	RGCY	9 cut(s)	11, 19, 270, 288, 315, 330, 373, 392, 396
CviKI_1	RGCY	9 cut(s)	11, 19, 270, 288, 315, 330, 373, 392, 396
DpnI	GATC	6 cut(s)	128, 149, 185, 221, 295, 354
DpnII	GATC	6 cut(s)	126, 147, 183, 219, 293, 352
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EaeI	YGGCCR	1 cut(s)	394
EciI	GGCGGA	1 cut(s)	286
Eco72I	CACGTG	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	315, 340
FaeI	CATG	2 cut(s)	181, 217
FaiI	YATR	2 cut(s)	179, 215
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	2 cut(s)	177, 213
Fnu4HI	GCNGC	3 cut(s)	70, 300, 362
Fsp4HI	GCNGC	3 cut(s)	70, 300, 362
GlaI	GCGC	2 cut(s)	157, 159
GluI	GCNGC	3 cut(s)	70, 300, 362
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	4 cut(s)	11, 315, 330, 396
HapII	CCGG	2 cut(s)	289, 393
HhaI	GCGC	2 cut(s)	158, 160
Hin1II	CATG	2 cut(s)	181, 217
Hin6I	GCGC	2 cut(s)	156, 158
HinP1I	GCGC	2 cut(s)	156, 158
HincII	GTYRAC	2 cut(s)	347, 410
HindII	GTYRAC	2 cut(s)	347, 410
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	289, 393
HphI	GGTGA	2 cut(s)	136, 455
Hpy166II	GTNNAC	3 cut(s)	347, 410, 463
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	3 cut(s)	41, 264, 456
Hpy8I	GTNNAC	3 cut(s)	347, 410, 463
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	3 cut(s)	26, 124, 467
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 336, 370
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	181, 217
HspAI	GCGC	2 cut(s)	156, 158
KroI	GCCGGC	1 cut(s)	392
KroNI	GCCGGC	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	126, 147, 183, 219, 293, 352
LmnI	GCTCC	1 cut(s)	163
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	233, 238, 453
MalI	GATC	6 cut(s)	128, 149, 185, 221, 295, 354
MboI	GATC	6 cut(s)	126, 147, 183, 219, 293, 352
MboII	GAAGA	2 cut(s)	157, 335
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	168
MmeI	TCCRAC	2 cut(s)	247, 403
MnlI	CCTC	8 cut(s)	86, 95, 179, 254, 281, 410, 428, 443
MroNI	GCCGGC	1 cut(s)	392
MspI	CCGG	2 cut(s)	289, 393
MspR9I	CCNGG	2 cut(s)	317, 342
MvaI	CCWGG	2 cut(s)	317, 342
MvnI	CGCG	2 cut(s)	108, 158
MwoI	GCNNNNNNNGC	3 cut(s)	308, 336, 370
NaeI	GCCGGC	1 cut(s)	394
NdeII	GATC	6 cut(s)	126, 147, 183, 219, 293, 352
NgoMIV	GCCGGC	1 cut(s)	392
NlaIII	CATG	2 cut(s)	181, 217
NmuCI	GTSAC	3 cut(s)	233, 238, 453
NspI	RCATGY	1 cut(s)	217
PauI	GCGCGC	1 cut(s)	156
PciI	ACATGT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	2 cut(s)	412, 463
PdiI	GCCGGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	71, 301, 363
PmaCI	CACGTG	1 cut(s)	238
PmlI	CACGTG	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	238
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	315, 340
PspCI	CACGTG	1 cut(s)	238
PspGI	CCWGG	2 cut(s)	315, 340
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	293
PteI	GCGCGC	1 cut(s)	156
SatI	GCNGC	3 cut(s)	70, 300, 362
Sau3AI	GATC	6 cut(s)	126, 147, 183, 219, 293, 352
ScrFI	CCNGG	2 cut(s)	317, 342
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	8 cut(s)	21, 78, 171, 240, 261, 321, 375, 439
SfcI	CTRYAG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	7 cut(s)	69, 88, 106, 297, 300, 362, 445
StyD4I	CCNGG	2 cut(s)	315, 340
TaaI	ACNGT	3 cut(s)	26, 124, 467
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	255
TauI	GCSGC	3 cut(s)	72, 302, 364
TfiI	GAWTC	1 cut(s)	37
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	3 cut(s)	233, 238, 453
Tsp45I	GTSAC	3 cut(s)	233, 238, 453
TspGWI	ACGGA	2 cut(s)	119, 263
TspRI	CASTG	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.