Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018259

Physical Location & Seq

Genomic Coordinates Reverse (-)

73607381 .. 73607833

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG510100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTTCTTGGCCTTGAAGCTCTGCTGTCAAGCAAAGAATCAAGAGAAGAGAGCGATTTCCCGTTCTGGTGGCGACCTCAATGTCCTCTGTTACTGCCAAAACGACCGCGTTTTCTCCCAAACGGTGATCCGTTTCTATCTGGTGAAGATCGTCTGCGCGCTGGAGCACCTCCACAGCATGGGGATCGCTTACCGAGATTTGAAACCGGAGAACATGTTGATCCAACATTCGGGTCACGTGACCCTCACGGACTTCGACCTTTCCAGAAGCCTCAAGCACCTCCACAGCCGGAGATCCGCATCAAACACTGCAGGCCAGGTTGAAGAAGGCCAAGTCTGCCCTGGTCAACCCGAGCTTCTCCGACAATGGCGAGCCGGGCAACTCGTTCGTCAACACCGAGGAGTGCGTGTCCCCCGAGGTCGTCTGCGGAGAGGGTCACGAGTTCGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

150

Amino Acids

17.22

Weight (kDa)

10.64

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 102	1.6e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	31 - 99	4.5e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018259)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003452.1_g000002 Rmu_sc0007014.1_g000003
rosa_samantha	Rh1CG033400 Rh2AG271600 Rh2AG510100 Rh2AG667200 Rh2BG678700 Rh2CG495300 Rh4BG379400 Rh4CG393800 Rh4DG131900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccII	CGCG	2 cut(s)	108, 158
AciI	CCGC	3 cut(s)	106, 297, 427
AclWI	GGATC	4 cut(s)	121, 191, 214, 288
AcvI	CACGTG	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	178, 229
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	3 cut(s)	16, 202, 323
AjnI	CCWGG	2 cut(s)	315, 340
AluBI	AGCT	2 cut(s)	19, 355
AluI	AGCT	2 cut(s)	19, 355
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	4 cut(s)	121, 191, 214, 288
Ama87I	CYCGRG	2 cut(s)	350, 414
AoxI	GGCC	3 cut(s)	9, 313, 328
AspLEI	GCGC	2 cut(s)	158, 160
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	136, 154
AvaI	CYCGRG	2 cut(s)	350, 414
BauI	CACGAG	1 cut(s)	438
BbrPI	CACGTG	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	168
BcgI	CGANNNNNNTGC	4 cut(s)	166, 200, 368, 402
BciT130I	CCWGG	2 cut(s)	317, 342
BcnI	CCSGG	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	309
Bme1390I	CCNGG	3 cut(s)	317, 342, 376
BmeT110I	CYCGRG	2 cut(s)	350, 414
BmrFI	CCNGG	3 cut(s)	317, 342, 376
BmsI	GCATC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	376
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	340, 397, 415
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 393, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 229
Bse8I	GATNNNNATC	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	317, 342
BseDI	CCNNGG	3 cut(s)	340, 397, 415
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	178, 229
BsePI	GCGCGC	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	414
Bsh1236I	CGCG	2 cut(s)	108, 158
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	11, 315, 330
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	2 cut(s)	350, 414
BsiSI	CCGG	3 cut(s)	206, 289, 375
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	178, 229
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	11, 315, 330
BsoBI	CYCGRG	2 cut(s)	350, 414
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	126, 147, 183, 219, 293
BspACI	CCGC	3 cut(s)	106, 297, 427
BspANI	GGCC	3 cut(s)	11, 315, 330
BspFNI	CGCG	2 cut(s)	108, 158
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	4 cut(s)	121, 191, 214, 288
BssECI	CCNNGG	3 cut(s)	340, 397, 415
BssHII	GCGCGC	1 cut(s)	156
BssMI	GATC	5 cut(s)	126, 147, 183, 219, 293
BssSI	CACGAG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	317, 342
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	158, 313, 372
BstFNI	CGCG	2 cut(s)	108, 158
BstHHI	GCGC	2 cut(s)	158, 160
BstKTI	GATC	5 cut(s)	129, 150, 186, 222, 296
BstMBI	GATC	5 cut(s)	126, 147, 183, 219, 293
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 376
BstNI	CCWGG	2 cut(s)	317, 342
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	315, 340, 374
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	2 cut(s)	108, 158
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	11, 315, 330
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	158, 313, 372
CfoI	GCGC	2 cut(s)	158, 160
CviAII	CATG	2 cut(s)	178, 214
CviJI	RGCY	8 cut(s)	11, 19, 270, 288, 315, 330, 355, 374
CviKI_1	RGCY	8 cut(s)	11, 19, 270, 288, 315, 330, 355, 374
DpnI	GATC	5 cut(s)	128, 149, 185, 221, 295
DpnII	GATC	5 cut(s)	126, 147, 183, 219, 293
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco72I	CACGTG	1 cut(s)	238
Eco88I	CYCGRG	2 cut(s)	350, 414
EcoRII	CCWGG	2 cut(s)	315, 340
FaeI	CATG	2 cut(s)	181, 217
FaiI	YATR	2 cut(s)	179, 215
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	177, 213
GlaI	GCGC	2 cut(s)	157, 159
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	3 cut(s)	11, 315, 330
HapII	CCGG	3 cut(s)	206, 289, 375
HhaI	GCGC	2 cut(s)	158, 160
Hin1II	CATG	2 cut(s)	181, 217
Hin6I	GCGC	2 cut(s)	156, 158
HinP1I	GCGC	2 cut(s)	156, 158
HincII	GTYRAC	2 cut(s)	347, 392
HindII	GTYRAC	2 cut(s)	347, 392
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	3 cut(s)	206, 289, 375
HphI	GGTGA	2 cut(s)	136, 154
Hpy166II	GTNNAC	2 cut(s)	347, 392
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	3 cut(s)	41, 264, 438
Hpy8I	GTNNAC	2 cut(s)	347, 392
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 376
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	181, 217
HspAI	GCGC	2 cut(s)	156, 158
Kzo9I	GATC	5 cut(s)	126, 147, 183, 219, 293
LmnI	GCTCC	1 cut(s)	163
LweI	GCATC	1 cut(s)	308
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	4 cut(s)	89, 233, 238, 435
MalI	GATC	5 cut(s)	128, 149, 185, 221, 295
MboI	GATC	5 cut(s)	126, 147, 183, 219, 293
MboII	GAAGA	3 cut(s)	58, 157, 335
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	168
MmeI	TCCRAC	2 cut(s)	247, 385
MnlI	CCTC	9 cut(s)	86, 95, 179, 254, 281, 290, 392, 410, 425
MspI	CCGG	3 cut(s)	206, 289, 375
MspR9I	CCNGG	3 cut(s)	317, 342, 376
MvaI	CCWGG	2 cut(s)	317, 342
MvnI	CGCG	2 cut(s)	108, 158
MwoI	GCNNNNNNNGC	2 cut(s)	336, 376
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	5 cut(s)	126, 147, 183, 219, 293
NlaIII	CATG	2 cut(s)	181, 217
NmuCI	GTSAC	3 cut(s)	233, 238, 435
NspI	RCATGY	1 cut(s)	217
PauI	GCGCGC	1 cut(s)	156
PciI	ACATGT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	2 cut(s)	394, 445
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	238
PmlI	CACGTG	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	238
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	315, 340
PspCI	CACGTG	1 cut(s)	238
PspGI	CCWGG	2 cut(s)	315, 340
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	293
PteI	GCGCGC	1 cut(s)	156
Sau3AI	GATC	5 cut(s)	126, 147, 183, 219, 293
ScrFI	CCNGG	3 cut(s)	317, 342, 376
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	9 cut(s)	21, 78, 171, 240, 261, 282, 321, 357, 421
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	3 cut(s)	106, 297, 427
StyD4I	CCNGG	3 cut(s)	315, 340, 374
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	37
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	3 cut(s)	233, 238, 435
Tsp45I	GTSAC	3 cut(s)	233, 238, 435
TspGWI	ACGGA	2 cut(s)	119, 263
TspRI	CASTG	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.