Rmu_sc0003465.1_g000049

GTP-binding protein TypA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003465.1
OG0018203
Physical Location & Seq
Reverse (-)
237810 .. 238754
945 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
atggcggggccgttgcttcgctctctctggtcctctacgcgtaacactatctcctcttcctcctccaaaccctacctacgtccctccgcactcgcccgcaccttctcggcggccactgcggccaccgatgctactctacagaggagcagcctgctcgacccggcccgcctccgcaacgtggcagtgatagcgcacgttgaccacggcaagaccaccctcatggaccgcctcctccgccagtgcggcgccgacatcccccacgaacgcgccatggattccatcagcctcgagcgcgagcgcggcatcactatcgcctccaaggttacgtcggttttctggaaggagaatgagctaaacatggttgatacgcctggacatgcagactttggtggtgaagttgagcgggttgtcggtatggttgagggagcagttttagttgttgatgccggggaaggtccgcttgcacagaccaagtttgtgcttgccaaagccttaaaatacgggctgcgtcctattcttcttctaaacaaagtagatcggcctgcaggtacttattctcgttttcaatttgcaaaatgtgcaagaatacatataacacatattctcgtagagaacatcctgaataataacatgtgtctcttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

214

Amino Acids

23.43

Weight (kDa)

9.47

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 56 - 184 3.5e-47 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018203)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0275271
rosa_laevigata RLG00000024622
rosa_multiflora Rmu_sc0003465.1_g000049
rosa_roxburghii Rroxscaffold_4G00319090
rosa_rugosa Rorug02G0141600
rosa_samantha Rh1DG035000 Rh4BG150800 Rh4BG192300 Rh4CG279100 Rh5AG431300 Rh5DG460100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 245
AccBSI CCGCTC 1 cut(s) 403
AccII CGCG 4 cut(s) 40, 267, 294, 300
AcoI YGGCCR 2 cut(s) 111, 120
AcyI GRCGYC 1 cut(s) 246
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 2 cut(s) 38, 630
AgsI TTSAA 1 cut(s) 566
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 5 cut(s) 8, 111, 120, 162, 539
ApeKI GCWGC 2 cut(s) 147, 505
AspLEI GCGC 5 cut(s) 193, 248, 269, 294, 300
AspS9I GGNCC 5 cut(s) 8, 30, 163, 223, 455
AsuC2I CCSGG 2 cut(s) 161, 448
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 3 cut(s) 30, 223, 455
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 159, 492
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 4 cut(s) 136, 170, 292, 326
BciT130I CCWGG 1 cut(s) 372
BcnI CCSGG 2 cut(s) 161, 448
BcoDI GTCTC 1 cut(s) 641
BfmI CTRYAG 2 cut(s) 137, 543
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 536
BglI GCCNNNNNGGC 2 cut(s) 119, 243
BisI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
BlsI GCNGC 6 cut(s) 112, 121, 149, 245, 302, 507
Bme1390I CCNGG 3 cut(s) 161, 372, 448
Bme18I GGWCC 3 cut(s) 30, 223, 455
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 5 cut(s) 8, 30, 163, 223, 455
BmiI GGNNCC 2 cut(s) 9, 247
BmrFI CCNGG 3 cut(s) 161, 372, 448
BmsI GCATC 3 cut(s) 118, 312, 433
BpuMI CCSGG 2 cut(s) 161, 448
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 4 cut(s) 202, 270, 318, 447
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 4 cut(s) 202, 270, 318, 447
BseGI GGATG 2 cut(s) 252, 615
BseLI CCNNNNNNNGG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 4 cut(s) 43, 52, 157, 221
BseXI GCAGC 2 cut(s) 159, 492
Bsh1236I CGCG 4 cut(s) 40, 267, 294, 300
BshFI GGCC 5 cut(s) 10, 113, 122, 164, 541
BshNI GGYRCC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 2 cut(s) 161, 447
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 5 cut(s) 10, 113, 122, 164, 541
BsoBI CYCGRG 1 cut(s) 287
Bsp143I GATC 1 cut(s) 535
Bsp19I CCATGG 1 cut(s) 270
BspANI GGCC 5 cut(s) 10, 113, 122, 164, 541
BspFNI CGCG 4 cut(s) 40, 267, 294, 300
BspLI GGNNCC 2 cut(s) 9, 247
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 403
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 4 cut(s) 202, 270, 318, 447
BssMI GATC 1 cut(s) 535
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 2 cut(s) 270, 318
Bst2UI CCWGG 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 7 cut(s) 97, 152, 166, 296, 462, 483, 543
BstDSI CCRYGG 2 cut(s) 202, 270
BstF5I GGATG 2 cut(s) 252, 615
BstFNI CGCG 4 cut(s) 40, 267, 294, 300
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 5 cut(s) 193, 248, 269, 294, 300
BstKTI GATC 1 cut(s) 538
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 1 cut(s) 535
BstMWI GCNNNNNNNGC 9 cut(s) 116, 119, 128, 188, 234, 243, 291, 300, 578
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 2 cut(s) 380, 634
BstSCI CCNGG 3 cut(s) 159, 370, 446
BstSFI CTRYAG 2 cut(s) 137, 543
BstUI CGCG 4 cut(s) 40, 267, 294, 300
BstV1I GCAGC 2 cut(s) 159, 492
BstXI CCANNNNNNTGG 1 cut(s) 220
BsuRI GGCC 5 cut(s) 10, 113, 122, 164, 541
BtgI CCRYGG 2 cut(s) 202, 270
BtsCI GGATG 2 cut(s) 252, 615
BtsI GCAGTG 2 cut(s) 114, 189
BtsIMutI CAGTG 3 cut(s) 114, 189, 245
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 7 cut(s) 97, 152, 166, 296, 462, 483, 543
CfoI GCGC 5 cut(s) 193, 248, 269, 294, 300
Cfr13I GGNCC 5 cut(s) 8, 30, 163, 223, 455
CseI GACGC 1 cut(s) 497
Csp6I GTAC 1 cut(s) 549
CviAII CATG 5 cut(s) 220, 271, 358, 377, 631
CviQI GTAC 1 cut(s) 549
DinI GGCGCC 1 cut(s) 247
DpnI GATC 1 cut(s) 537
DpnII GATC 1 cut(s) 535
EaeI YGGCCR 2 cut(s) 111, 120
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 270, 318
Eco47I GGWCC 3 cut(s) 30, 223, 455
Eco88I CYCGRG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 270, 318
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 270, 318
FaeI CATG 5 cut(s) 223, 274, 361, 380, 634
FaiI YATR 9 cut(s) 221, 272, 359, 378, 416, 591, 593, 600, 632
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 66
FatI CATG 5 cut(s) 219, 270, 357, 376, 630
FauI CCCGC 3 cut(s) 104, 173, 396
Fnu4HI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
FokI GGATG 2 cut(s) 239, 602
Fsp4HI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
GlaI GCGC 5 cut(s) 192, 247, 268, 293, 299
GluI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 5 cut(s) 10, 113, 122, 164, 541
HapII CCGG 2 cut(s) 161, 447
HgaI GACGC 1 cut(s) 497
HhaI GCGC 5 cut(s) 193, 248, 269, 294, 300
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 5 cut(s) 223, 274, 361, 380, 634
Hin6I GCGC 5 cut(s) 191, 246, 267, 292, 298
HinP1I GCGC 5 cut(s) 191, 246, 267, 292, 298
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 161, 447
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 337, 619
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 3 cut(s) 112, 334, 446
HpyCH4IV ACGT 4 cut(s) 79, 177, 195, 326
HpyCH4V TGCA 5 cut(s) 380, 464, 545, 572, 581
HpyF10VI GCNNNNNNNGC 9 cut(s) 116, 119, 128, 188, 234, 243, 291, 300, 578
HpySE526I ACGT 4 cut(s) 79, 177, 195, 326
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 5 cut(s) 223, 274, 361, 380, 634
HspAI GCGC 5 cut(s) 191, 246, 267, 292, 298
KasI GGCGCC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 535
LmnI GCTCC 2 cut(s) 144, 425
Lsp1109I GCAGC 2 cut(s) 159, 492
LweI GCATC 3 cut(s) 118, 312, 433
MaeII ACGT 4 cut(s) 79, 177, 195, 326
MaeIII GTNAC 2 cut(s) 41, 322
MalI GATC 1 cut(s) 537
MbiI CCGCTC 1 cut(s) 403
MboI GATC 1 cut(s) 535
MboII GAAGA 4 cut(s) 48, 509, 512, 631
MluCI AATT 1 cut(s) 566
MluI ACGCGT 1 cut(s) 38
Mly113I GGCGCC 1 cut(s) 246
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 161, 447
MspR9I CCNGG 3 cut(s) 161, 372, 448
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 4 cut(s) 40, 267, 294, 300
MwoI GCNNNNNNNGC 9 cut(s) 116, 119, 128, 188, 234, 243, 291, 300, 578
NarI GGCGCC 1 cut(s) 246
NciI CCSGG 2 cut(s) 161, 448
NcoI CCATGG 1 cut(s) 270
NdeII GATC 1 cut(s) 535
NlaIII CATG 5 cut(s) 223, 274, 361, 380, 634
NlaIV GGNNCC 2 cut(s) 9, 247
NmeAIII GCCGAG 1 cut(s) 86
NspI RCATGY 2 cut(s) 380, 634
PaeR7I CTCGAG 1 cut(s) 287
PciI ACATGT 1 cut(s) 630
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 6 cut(s) 112, 121, 149, 245, 302, 507
PluTI GGCGCC 1 cut(s) 249
PscI ACATGT 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 9, 247
PspPI GGNCC 5 cut(s) 8, 30, 163, 223, 455
PspXI VCTCGAGB 1 cut(s) 287
PstI CTGCAG 1 cut(s) 547
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 6 cut(s) 111, 120, 148, 244, 301, 506
Sau3AI GATC 1 cut(s) 535
Sau96I GGNCC 5 cut(s) 8, 30, 163, 223, 455
SbfI CCTGCAGG 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 161, 372, 448
SdaI CCTGCAGG 1 cut(s) 547
SfaNI GCATC 3 cut(s) 118, 312, 433
SfcI CTRYAG 2 cut(s) 137, 543
SfiI GGCCNNNNNGGCC 1 cut(s) 119
SfoI GGCGCC 1 cut(s) 247
Sfr274I CTCGAG 1 cut(s) 287
SinI GGWCC 3 cut(s) 30, 223, 455
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse8387I CCTGCAGG 1 cut(s) 547
Sse9I AATT 1 cut(s) 566
SspDI GGCGCC 1 cut(s) 245
StyD4I CCNGG 3 cut(s) 159, 370, 446
StyI CCWWGG 2 cut(s) 270, 318
TaiI ACGT 4 cut(s) 82, 180, 198, 329
TaqI TCGA 2 cut(s) 156, 288
TasI AATT 1 cut(s) 566
TauI GCSGC 4 cut(s) 113, 122, 246, 303
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 3 cut(s) 121, 189, 245
TseI GCWGC 2 cut(s) 147, 505
TspRI CASTG 3 cut(s) 121, 189, 245
VpaK11BI GGWCC 3 cut(s) 30, 223, 455
XceI RCATGY 2 cut(s) 380, 634
XhoI CTCGAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.