Rmu_sc0003475.1_g000011

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003475.1
OG0018060
Physical Location & Seq
Reverse (-)
72049 .. 72378
330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
atgcgaagcaaggcacacatcgtctctgctatccatggcgacatggaccagttcaatcgtgacaggattatgcgtgagttccattctggcacttgcccggttctgatcaccagtactgatatgatggcttctaatatcaatgcggagcaagtatctctagccataaattatgatttgcctactcaaccagaacaataccgacggattgaaaccttcggaagaacaggtgttgccattaactttgtgaccagggatgagaagagagtgcttcacgatatcgagagggtttgtaatatggacatcagggagcttccattttccaccagctaa

Protein Analysis

109

Amino Acids

12.56

Weight (kDa)

6.05

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 6 - 68 3e-13 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34110
rosa_laevigata RLG00000020077
rosa_multiflora Rmu_co8505185.1_g000001 Rmu_sc0003475.1_g000011 Rmu_sc0003475.1_g000013
rosa_roxburghii Rroxscaffold_2G00101340
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438500 Rh2CG425600 Rh2DG458600
rosa_wichuraiana Rw2G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AfaI GTAC 1 cut(s) 115
AgsI TTSAA 2 cut(s) 55, 209
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 2 cut(s) 310, 327
AluI AGCT 2 cut(s) 310, 327
Alw26I GTCTC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 46
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 250
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 158
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 98, 250
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 98, 250
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 34, 249
Bse1I ACTGG 2 cut(s) 49, 111
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 34, 249
BseGI GGATG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 49, 111
BsiSI CCGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 28
BsmBI CGTCTC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 105
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 49, 111
BssECI CCNNGG 2 cut(s) 34, 249
BssMI GATC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 96, 248
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 35, 43
CviJI RGCY 4 cut(s) 128, 161, 310, 327
CviKI_1 RGCY 4 cut(s) 128, 161, 310, 327
CviQI GTAC 1 cut(s) 114
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 34
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 248
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 2 cut(s) 38, 46
FaiI YATR 7 cut(s) 36, 44, 71, 122, 164, 171, 296
FatI CATG 2 cut(s) 34, 42
FbaI TGATCA 1 cut(s) 105
FokI GGATG 1 cut(s) 266
FspBI CTAG 1 cut(s) 158
HapII CCGG 1 cut(s) 98
Hin1II CATG 2 cut(s) 38, 46
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 105, 218
Hpy188III TCNNGA 3 cut(s) 59, 272, 280
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 38, 46
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 145, 307
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 59, 244
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 2 cut(s) 231, 271
MluCI AATT 1 cut(s) 166
MnlI CCTC 1 cut(s) 276
MseI TTAA 1 cut(s) 237
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 98, 250
MvaI CCWGG 1 cut(s) 250
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 34
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 38, 46
NmuCI GTSAC 2 cut(s) 59, 244
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 46
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 98, 250
SetI ASST 4 cut(s) 215, 229, 312, 329
SinI GGWCC 1 cut(s) 46
Sse9I AATT 1 cut(s) 166
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 96, 248
StyI CCWWGG 1 cut(s) 34
TaqI TCGA 1 cut(s) 279
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 113
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseFI GTSAC 2 cut(s) 59, 244
Tsp45I GTSAC 2 cut(s) 59, 244
TspGWI ACGGA 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 46
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.