Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003637.1

Orthogroup ID

OG0017373

Physical Location & Seq

Genomic Coordinates Reverse (-)

36124 .. 36798

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ctggacaatgaccactttgctgaaagcacaatccagcagctctattgtgacaaatgcaagaggttcttagcggaccggttcgtggaggggacatgccgtactcaagaatgtcactatgattttgctcgaggagaccagtgtgacaagtgtggacagctcttgaatccgacagaattgaaagatcctaaatgcatggtttgcaaggaaactccgcggattcgcgaaacaaatcacttgtttctggggctccctttgctcaaggataggttggaagaatacatcaatagagaatcagtggaagggtgttggagccagaatgcggttcaaatcacaaatgcctggctcaaagaggggcttaaacaacgttgcactacaagggatctcaagtggggtgtttcggttccacatgatggctttagggacaaggtattctacgtgtggttcaatgctcctattggatacatctccattaccaagtgttgcactcctgatcactgggagaagtggtggaagaattctgaggatgtcgaattgtataagtttatgggaaaggacaatgtgccattccacacagtcatgtttccctcctccctccttggaaccggagaaatgtgggcactgatgaagaatatcagtgtcacagagtatttgaactatgaaaaagccaagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

224

Amino Acids

26.33

Weight (kDa)

6.35

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	2 - 224	5.8e-79	tRNA synthetases class I (M)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017373)

Species	Orthologous Gene IDs
malus_domestica	MD10G1160800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0414261 RchiOBHm_Chr4g0445731
rosa_laevigata	RLG00000005712
rosa_multiflora	Rmu_sc0003637.1_g000009 Rmu_sc0003637.1_g000010
rosa_roxburghii	Rroxscaffold_2G00121530
rosa_samantha	Rh4AG426200 Rh4CG453200 Rh4DG180400 Rh4DG181300 Rh4DG434400
rosa_wichuraiana	Rw4G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccII	CGCG	2 cut(s)	214, 222
AciI	CCGC	4 cut(s)	71, 212, 214, 320
AclI	AACGTT	1 cut(s)	364
AclWI	GGATC	2 cut(s)	176, 387
AcsI	RAATTY	1 cut(s)	514
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	3 cut(s)	82, 319, 410
AflIII	ACRYGT	1 cut(s)	435
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	5 cut(s)	163, 178, 326, 445, 652
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	2 cut(s)	40, 157
AluI	AGCT	2 cut(s)	40, 157
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	176, 387
Ama87I	CYCGRG	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	514
AsiGI	ACCGGT	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	340
BciVI	GTATCC	1 cut(s)	452
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	4 cut(s)	248, 311, 402, 601
BmrFI	CCNGG	1 cut(s)	340
BmrI	ACTGGG	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	505
BpuEI	CTTGAG	3 cut(s)	87, 242, 368
BsaAI	YACGTR	1 cut(s)	436
BsaI	GGTCTC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	212, 595
BsaWI	WCCGGW	2 cut(s)	75, 602
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 319, 410
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	136, 500
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	212, 595
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	3 cut(s)	82, 319, 410
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	136, 500
BseRI	GAGGAG	2 cut(s)	144, 577
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	214, 222
BshTI	ACCGGT	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	76, 603
BslFI	GGGAC	2 cut(s)	103, 434
BslI	CCNNNNNNNGG	3 cut(s)	82, 319, 410
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	103, 434
BsmI	GAATGC	1 cut(s)	322
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	249, 619
Bsp143I	GATC	3 cut(s)	181, 379, 490
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	4 cut(s)	71, 212, 214, 320
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	2 cut(s)	214, 222
BspLI	GGNNCC	4 cut(s)	248, 311, 402, 601
BspPI	GGATC	2 cut(s)	176, 387
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	136, 500
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	212, 595
BssMI	GATC	3 cut(s)	181, 379, 490
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	67, 519
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	2 cut(s)	214, 222
BstKTI	GATC	3 cut(s)	184, 382, 493
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	181, 379, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 253
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	2 cut(s)	214, 222
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	181, 379
BstYI	RGATCY	2 cut(s)	181, 379
BsuI	GTATCC	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	5 cut(s)	143, 300, 493, 617, 640
BtuMI	TCGCGA	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	73
Cfr42I	CCGCGG	1 cut(s)	215
CpoI	CGGWCCG	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	99
CspAI	ACCGGT	1 cut(s)	75
CspI	CGGWCCG	1 cut(s)	73
CviAII	CATG	4 cut(s)	93, 193, 407, 577
CviJI	RGCY	8 cut(s)	40, 157, 247, 312, 343, 355, 414, 665
CviKI_1	RGCY	8 cut(s)	40, 157, 247, 312, 343, 355, 414, 665
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	67, 519
DpnI	GATC	3 cut(s)	183, 381, 492
DpnII	GATC	3 cut(s)	181, 379, 490
Eco130I	CCWWGG	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	4 cut(s)	96, 196, 410, 580
FaiI	YATR	8 cut(s)	94, 117, 194, 408, 537, 545, 578, 657
FalI	AAGNNNNNCTT	4 cut(s)	50, 82, 339, 371
FaqI	GGGAC	2 cut(s)	103, 434
FatI	CATG	4 cut(s)	92, 192, 406, 576
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
HapII	CCGG	2 cut(s)	76, 603
Hin1II	CATG	4 cut(s)	96, 196, 410, 580
HinfI	GANTC	3 cut(s)	163, 217, 290
HpaII	CCGG	2 cut(s)	76, 603
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	168, 520
Hpy188III	TCNNGA	4 cut(s)	104, 160, 221, 488
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	2 cut(s)	364, 435
HpyCH4V	TGCA	5 cut(s)	57, 192, 201, 369, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 253
HpyF3I	CTNAG	2 cut(s)	67, 519
HpySE526I	ACGT	2 cut(s)	364, 435
Hsp92II	CATG	4 cut(s)	96, 196, 410, 580
Ksp22I	TGATCA	1 cut(s)	490
KspI	CCGCGG	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	181, 379, 490
LmnI	GCTCC	3 cut(s)	252, 309, 454
Lsp1109I	GCAGC	1 cut(s)	49
MaeII	ACGT	2 cut(s)	364, 435
MaeIII	GTNAC	4 cut(s)	47, 110, 140, 637
MalI	GATC	3 cut(s)	183, 381, 492
MboI	GATC	3 cut(s)	181, 379, 490
MboII	GAAGA	3 cut(s)	284, 523, 637
MflI	RGATCY	2 cut(s)	181, 379
MhlI	GDGCHC	2 cut(s)	249, 619
MluCI	AATT	3 cut(s)	173, 514, 530
MmeI	TCCRAC	3 cut(s)	191, 249, 287
MnlI	CCTC	8 cut(s)	54, 79, 122, 343, 514, 595, 598, 602
Mph1103I	ATGCAT	1 cut(s)	194
MseI	TTAA	2 cut(s)	357, 673
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	2 cut(s)	76, 603
MspR9I	CCNGG	1 cut(s)	340
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	1 cut(s)	340
MvnI	CGCG	2 cut(s)	214, 222
MwoI	GCNNNNNNNGC	2 cut(s)	198, 253
NdeII	GATC	3 cut(s)	181, 379, 490
NlaIII	CATG	4 cut(s)	96, 196, 410, 580
NlaIV	GGNNCC	4 cut(s)	248, 311, 402, 601
NmuCI	GTSAC	4 cut(s)	47, 110, 140, 637
NruI	TCGCGA	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	194
NspI	RCATGY	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	126
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	163, 217, 290
PflMI	CCANNNNNTGG	1 cut(s)	410
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	39
Ppu21I	YACGTR	1 cut(s)	436
Psp1406I	AACGTT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	4 cut(s)	248, 311, 402, 601
PspPI	GGNCC	1 cut(s)	73
PspXI	VCTCGAGB	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	181, 379
RruI	TCGCGA	1 cut(s)	222
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	575
Rsr2I	CGGWCCG	1 cut(s)	73
RsrII	CGGWCCG	1 cut(s)	73
SacII	CCGCGG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	357, 673
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	3 cut(s)	181, 379, 490
Sau96I	GGNCC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	2 cut(s)	249, 619
SetI	ASST	7 cut(s)	42, 65, 159, 269, 367, 429, 438
Sfr274I	CTCGAG	1 cut(s)	126
Sfr303I	CCGCGG	1 cut(s)	215
SgrBI	CCGCGG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	4 cut(s)	102, 126, 257, 383
SmoI	CTYRAG	4 cut(s)	102, 126, 257, 383
Sse9I	AATT	3 cut(s)	173, 514, 530
SsiI	CCGC	4 cut(s)	71, 212, 214, 320
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	2 cut(s)	367, 438
TaqI	TCGA	2 cut(s)	127, 528
TasI	AATT	3 cut(s)	173, 514, 530
TfiI	GAWTC	3 cut(s)	163, 217, 290
Tru1I	TTAA	2 cut(s)	357, 673
Tru9I	TTAA	2 cut(s)	357, 673
TscAI	CASTG	5 cut(s)	143, 300, 500, 624, 640
TseFI	GTSAC	4 cut(s)	47, 110, 140, 637
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	4 cut(s)	47, 110, 140, 637
TspDTI	ATGAA	2 cut(s)	638, 672
TspRI	CASTG	5 cut(s)	143, 300, 500, 624, 640
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	1 cut(s)	96
XhoI	CTCGAG	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.