Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003642.1

Orthogroup ID

OG0011770

Physical Location & Seq

Genomic Coordinates Reverse (-)

950 .. 8045

Gene Structure 7096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003642.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

atgacgaatttcacaattgcattgagagaaatcggaacatacaaggaagttttgcggtcacaggtagagcacatgctaaatgataggctgctgcaatttgtaaatgttgacctccaagatctcaaggttactgctctctccgatattgaggcgaaaaagaagtttgagtttcaggaagctgttagtggggtgatggatgctcatcttcgttacttcaaacagggatatgagctactacacacaatggaaccctatattcatcaggttttggagtatgcacaacatacgagagaaagtgccaaccaggaacagatatcgcttaatgaaagaataatagagtacagaaggcagattgatagggaaagtaggcagtccttacgtggtgttcatggttgttttagcggagatggtatgcagactttggctagaagatcaaataaactgatagaggaagtgatgcaatctgctgcaaaggggaagattcaaaccattcgtcaaggatatctctcaaaacggtcctccaatttgagaggcgactggaaaagaaggtatttcattcttgatagtcgagggatgctgtattactatcgcaaaccatggaaccggtcatcttcttctccacagaagaataattccaccgactatggctctgggattttgagtcgatggctttcttcccactatcatggtggtgtacatgatgaaaaatccgttgcacgtcacactgtgaacttgctgacatcaacaattaaggttgatgcagaccagacagacttaagattctgcttcaggattatatcacctttaaaaatttacactttgcaggcagagaatgcactcgaccaaatggattggattgagaaaatcactggagtaatttcttcattattgagtttccaggcacctgagagggaccagtcaccaaaaatcttcactaataattatttgcgtacctatagaagtttgcaaccgcataagccgagtgtgaaaactgagaagccaattgagatattgagaagagtacgtggtaatgacaagtgtgctgattgtggggcacctgacccagattgggcatccttaaaccttgaaaaacgttttgttcgccccggaaagatcagtcagaaactccaccctgtggagcaacagttgtggaaaagtgtctgtactaatgacaagcaagctgtttactgcaatattgtcagctttgaagctgatattaatgctgtatgtgggaaagcattatgtgataattcaatagacaagccttcctcaagtaattcaaatttatcaagtagaagtgaagatcgcctcatagaaaacatccctgagggttgttccctgcttcacctggcctgccaaattgctgatattggcatggtggagttacttttacagtatggtgcaaatataaatgcttctgattcaaaaggccaaacgccactccattattgtgttatgagagggaatcctgctattacaaagatgcttctcacgagaggagcagatcctcaagccactgacagagaaggtaaaacaccatgtaagcttgtatcagagtcagccttgaatgacaatgggatgctttctatgctgacaaactcaggcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007010 GO:0008150 GO:0009987 GO:0016043 GO:0030139 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH

Protein Analysis

536

Amino Acids

60.97

Weight (kDa)

8.89

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61980
fragaria_vesca	FvH4_5g09370 FvH4_5g09370 FvH4_5g09370
malus_domestica	MD06G1131800.v1.1 MD14G1148100.v1.1
prunus_persica	Prupe.5G142800_v2.0.a1
pyrus_communis	pycom06g12340 pycom14g12290
rosa_chinensis	RchiOBHm_Chr7g0188801
rosa_laevigata	RLG00000004658
rosa_multiflora	Rmu_sc0003642.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266010
rosa_rugosa	Rorug06G0494100
rosa_samantha	Rh7AG098800 Rh7BG100500 Rh7CG102000 Rh7DG100600
rosa_wichuraiana	Rw7G008510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	901, 1054
AccB7I	CCANNNNNTGG	1 cut(s)	1135
AciI	CCGC	3 cut(s)	55, 402, 971
AclI	AACGTT	1 cut(s)	1093
AclWI	GGATC	1 cut(s)	1499
AcsI	RAATTY	3 cut(s)	7, 810, 1282
AcuI	CTGAAG	1 cut(s)	772
AdeI	CACNNNGTG	2 cut(s)	727, 1135
AfaI	GTAC	5 cut(s)	341, 696, 952, 1023, 1165
AfiI	CCNNNNNNNGG	2 cut(s)	1069, 1135
AflII	CTTAAG	1 cut(s)	775
AgeI	ACCGGT	1 cut(s)	603
AgsI	TTSAA	8 cut(s)	217, 485, 1088, 1208, 1254, 1281, 1425, 1567
AjiI	CACGTC	1 cut(s)	719
AjnI	CCWGG	3 cut(s)	303, 897, 1347
AluBI	AGCT	6 cut(s)	179, 232, 1181, 1203, 1211, 1546
AluI	AGCT	6 cut(s)	179, 232, 1181, 1203, 1211, 1546
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	1499
AoxI	GGCC	2 cut(s)	1350, 1429
ApeKI	GCWGC	3 cut(s)	88, 91, 467
ApoI	RAATTY	3 cut(s)	7, 810, 1282
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
AseI	ATTAAT	1 cut(s)	1218
AsiGI	ACCGGT	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	516, 913
AsuC2I	CCSGG	1 cut(s)	1107
AsuHPI	GGTGA	4 cut(s)	202, 792, 912, 1337
AvaII	GGWCC	2 cut(s)	516, 913
AxyI	CCTNAGG	1 cut(s)	1326
BaeGI	GKGCMC	1 cut(s)	1057
BanI	GGYRCC	2 cut(s)	901, 1054
BauI	CACGAG	1 cut(s)	1492
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	75, 78, 454
BccI	CCATC	3 cut(s)	187, 401, 660
BciT130I	CCWGG	3 cut(s)	305, 899, 1349
BcnI	CCSGG	1 cut(s)	1107
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	955
BfrI	CTTAAG	1 cut(s)	775
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	3 cut(s)	89, 92, 468
BlsI	GCNGC	3 cut(s)	90, 93, 469
Bme1390I	CCNGG	4 cut(s)	305, 899, 1107, 1349
Bme18I	GGWCC	2 cut(s)	516, 913
BmgBI	CACGTC	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	516, 913
BmiI	GGNNCC	5 cut(s)	249, 602, 903, 914, 1056
BmrFI	CCNGG	4 cut(s)	305, 899, 1107, 1349
BmsI	GCATC	7 cut(s)	187, 447, 564, 748, 1082, 1473, 1569
BpmI	CTGGAG	1 cut(s)	891
BpuEI	CTTGAG	3 cut(s)	107, 1255, 1494
BpuMI	CCSGG	1 cut(s)	1107
BsaAI	YACGTR	2 cut(s)	380, 1025
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	596, 1105
BsaWI	WCCGGW	1 cut(s)	603
BsaXI	ACNNNNNCTCC	2 cut(s)	1130, 1160
Bsc4I	CCNNNNNNNGG	2 cut(s)	1069, 1135
Bse118I	RCCGGY	1 cut(s)	603
Bse1I	ACTGG	3 cut(s)	542, 874, 916
Bse21I	CCTNAGG	1 cut(s)	1326
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	3 cut(s)	305, 899, 1349
BseDI	CCNNGG	2 cut(s)	596, 1105
BseGI	GGATG	5 cut(s)	202, 579, 1073, 1320, 1584
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	1069, 1135
BseMII	CTCAG	3 cut(s)	897, 984, 1317
BseNI	ACTGG	3 cut(s)	542, 874, 916
BseRI	GAGGAG	1 cut(s)	1512
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	3 cut(s)	75, 78, 454
BshFI	GGCC	2 cut(s)	1352, 1431
BshNI	GGYRCC	2 cut(s)	901, 1054
BshTI	ACCGGT	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	604, 1107
BslFI	GGGAC	1 cut(s)	926
BslI	CCNNNNNNNGG	2 cut(s)	1069, 1135
BsmFI	GGGAC	1 cut(s)	926
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	2 cut(s)	1352, 1431
Bsp1286I	GDGCHC	2 cut(s)	72, 1057
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	5 cut(s)	118, 431, 1113, 1303, 1504
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	3 cut(s)	55, 402, 971
BspANI	GGCC	2 cut(s)	1352, 1431
BspCNI	CTCAG	3 cut(s)	898, 985, 1318
BspLI	GGNNCC	5 cut(s)	249, 602, 903, 914, 1056
BspPI	GGATC	1 cut(s)	1499
BspT107I	GGYRCC	2 cut(s)	901, 1054
BspTI	CTTAAG	1 cut(s)	775
BsrFI	RCCGGY	1 cut(s)	603
BsrGI	TGTACA	1 cut(s)	694
BsrI	ACTGG	3 cut(s)	542, 874, 916
BssAI	RCCGGY	1 cut(s)	603
BssECI	CCNNGG	2 cut(s)	596, 1105
BssMI	GATC	5 cut(s)	118, 431, 1113, 1303, 1504
BssSI	CACGAG	1 cut(s)	1492
BssT1I	CCWWGG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	1492
Bst2UI	CCWGG	3 cut(s)	305, 899, 1349
Bst4CI	ACNGT	4 cut(s)	516, 727, 1146, 1395
Bst6I	CTCTTC	1 cut(s)	1012
BstAFI	CTTAAG	1 cut(s)	775
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstAUI	TGTACA	1 cut(s)	694
BstBAI	YACGTR	2 cut(s)	380, 1025
BstC8I	GCNNGC	3 cut(s)	825, 1179, 1354
BstDEI	CTNAG	4 cut(s)	906, 993, 1326, 1600
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	5 cut(s)	202, 579, 1073, 1320, 1584
BstKTI	GATC	5 cut(s)	121, 434, 1116, 1306, 1507
BstMBI	GATC	5 cut(s)	118, 431, 1113, 1303, 1504
BstMWI	GCNNNNNNNGC	2 cut(s)	833, 1588
BstNI	CCWGG	3 cut(s)	305, 899, 1349
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	4 cut(s)	303, 897, 1105, 1347
BstSFI	CTRYAG	1 cut(s)	955
BstSLI	GKGCMC	1 cut(s)	1057
BstV1I	GCAGC	3 cut(s)	75, 78, 454
BstX2I	RGATCY	2 cut(s)	118, 1504
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	2 cut(s)	118, 1504
Bsu36I	CCTNAGG	1 cut(s)	1326
BsuRI	GGCC	2 cut(s)	1352, 1431
BtgI	CCRYGG	1 cut(s)	596
BtrI	CACGTC	1 cut(s)	719
BtsCI	GGATG	5 cut(s)	202, 579, 1073, 1320, 1584
BtsIMutI	CAGTG	3 cut(s)	723, 867, 1515
Cac8I	GCNNGC	3 cut(s)	825, 1179, 1354
Cfr10I	RCCGGY	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	516, 913
Csp6I	GTAC	5 cut(s)	340, 695, 951, 1022, 1164
CspAI	ACCGGT	1 cut(s)	603
CspCI	CAANNNNNGTGG	2 cut(s)	1130, 1165
CviAII	CATG	7 cut(s)	73, 389, 597, 686, 698, 1375, 1539
CviQI	GTAC	5 cut(s)	340, 695, 951, 1022, 1164
DdeI	CTNAG	4 cut(s)	906, 993, 1326, 1600
DpnI	GATC	5 cut(s)	120, 433, 1115, 1305, 1506
DpnII	GATC	5 cut(s)	118, 431, 1113, 1303, 1504
DraI	TTTAAA	1 cut(s)	807
DraIII	CACNNNGTG	2 cut(s)	727, 1135
Eam1104I	CTCTTC	1 cut(s)	1012
EarI	CTCTTC	1 cut(s)	1012
Eco130I	CCWWGG	1 cut(s)	596
Eco32I	GATATC	2 cut(s)	315, 503
Eco47I	GGWCC	2 cut(s)	516, 913
Eco57I	CTGAAG	1 cut(s)	772
Eco81I	CCTNAGG	1 cut(s)	1326
EcoRII	CCWGG	3 cut(s)	303, 897, 1347
EcoRV	GATATC	2 cut(s)	315, 503
EcoT14I	CCWWGG	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	7 cut(s)	76, 392, 600, 689, 701, 1378, 1542
FaqI	GGGAC	1 cut(s)	926
FatI	CATG	7 cut(s)	72, 388, 596, 685, 697, 1374, 1538
Fnu4HI	GCNGC	3 cut(s)	89, 92, 468
FokI	GGATG	5 cut(s)	209, 586, 1060, 1307, 1591
Fsp4HI	GCNGC	3 cut(s)	89, 92, 468
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	3 cut(s)	89, 92, 468
GsuI	CTGGAG	1 cut(s)	891
HaeIII	GGCC	2 cut(s)	1352, 1431
HapII	CCGG	2 cut(s)	604, 1107
Hin1II	CATG	7 cut(s)	76, 392, 600, 689, 701, 1378, 1542
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	1544
HinfI	GANTC	6 cut(s)	481, 661, 780, 1421, 1465, 1556
HpaII	CCGG	2 cut(s)	604, 1107
HphI	GGTGA	4 cut(s)	202, 792, 912, 1337
Hpy166II	GTNNAC	4 cut(s)	109, 695, 730, 1186
Hpy188I	TCNGA	5 cut(s)	35, 142, 1122, 1420, 1555
Hpy188III	TCNNGA	4 cut(s)	173, 560, 790, 1492
Hpy8I	GTNNAC	4 cut(s)	109, 695, 730, 1186
HpyAV	CCTTC	4 cut(s)	339, 540, 1275, 1520
HpyCH4III	ACNGT	4 cut(s)	516, 727, 1146, 1395
HpyCH4IV	ACGT	4 cut(s)	379, 718, 1024, 1093
HpyF10VI	GCNNNNNNNGC	2 cut(s)	833, 1588
HpyF3I	CTNAG	4 cut(s)	906, 993, 1326, 1600
HpySE526I	ACGT	4 cut(s)	379, 718, 1024, 1093
Hsp92II	CATG	7 cut(s)	76, 392, 600, 689, 701, 1378, 1542
Kzo9I	GATC	5 cut(s)	118, 431, 1113, 1303, 1504
LmnI	GCTCC	2 cut(s)	1138, 1499
Lsp1109I	GCAGC	3 cut(s)	75, 78, 454
LweI	GCATC	7 cut(s)	187, 447, 564, 748, 1082, 1473, 1569
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	4 cut(s)	379, 718, 1024, 1093
MaeIII	GTNAC	6 cut(s)	57, 127, 209, 719, 918, 1383
MalI	GATC	5 cut(s)	120, 433, 1115, 1305, 1506
MboI	GATC	5 cut(s)	118, 431, 1113, 1303, 1504
MfeI	CAATTG	2 cut(s)	15, 1002
MflI	RGATCY	2 cut(s)	118, 1504
MhlI	GDGCHC	2 cut(s)	72, 1057
MlyI	GAGTC	2 cut(s)	670, 1565
MseI	TTAA	6 cut(s)	321, 750, 776, 806, 1079, 1218
MslI	CAYNNNNRTG	3 cut(s)	684, 690, 1449
MspCI	CTTAAG	1 cut(s)	775
MspI	CCGG	2 cut(s)	604, 1107
MspR9I	CCNGG	4 cut(s)	305, 899, 1107, 1349
MunI	CAATTG	2 cut(s)	15, 1002
Mva1269I	GAATGC	1 cut(s)	838
MvaI	CCWGG	3 cut(s)	305, 899, 1349
MwoI	GCNNNNNNNGC	2 cut(s)	833, 1588
NciI	CCSGG	1 cut(s)	1107
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	5 cut(s)	118, 431, 1113, 1303, 1504
NlaIII	CATG	7 cut(s)	76, 392, 600, 689, 701, 1378, 1542
NlaIV	GGNNCC	5 cut(s)	249, 602, 903, 914, 1056
NmeAIII	GCCGAG	1 cut(s)	1005
NmuCI	GTSAC	3 cut(s)	57, 719, 918
NspI	RCATGY	1 cut(s)	76
PctI	GAATGC	1 cut(s)	838
PfeI	GAWTC	4 cut(s)	481, 780, 1421, 1465
PflMI	CCANNNNNTGG	1 cut(s)	1135
PinAI	ACCGGT	1 cut(s)	603
PkrI	GCNGC	3 cut(s)	90, 93, 469
PleI	GAGTC	2 cut(s)	669, 1564
PpsI	GAGTC	2 cut(s)	669, 1564
Ppu21I	YACGTR	2 cut(s)	380, 1025
PshBI	ATTAAT	1 cut(s)	1218
Psp1406I	AACGTT	1 cut(s)	1093
Psp6I	CCWGG	3 cut(s)	303, 897, 1347
PspGI	CCWGG	3 cut(s)	303, 897, 1347
PspN4I	GGNNCC	5 cut(s)	249, 602, 903, 914, 1056
PspPI	GGNCC	2 cut(s)	516, 913
PsuI	RGATCY	2 cut(s)	118, 1504
RsaI	GTAC	5 cut(s)	341, 696, 952, 1023, 1165
RsaNI	GTAC	5 cut(s)	340, 695, 951, 1022, 1164
RseI	CAYNNNNRTG	3 cut(s)	684, 690, 1449
SaqAI	TTAA	6 cut(s)	321, 750, 776, 806, 1079, 1218
SatI	GCNGC	3 cut(s)	89, 92, 468
Sau3AI	GATC	5 cut(s)	118, 431, 1113, 1303, 1504
Sau96I	GGNCC	2 cut(s)	516, 913
SchI	GAGTC	2 cut(s)	670, 1565
ScrFI	CCNGG	4 cut(s)	305, 899, 1107, 1349
SduI	GDGCHC	2 cut(s)	72, 1057
SfaNI	GCATC	7 cut(s)	187, 447, 564, 748, 1082, 1473, 1569
SfcI	CTRYAG	1 cut(s)	955
SinI	GGWCC	2 cut(s)	516, 913
SmiMI	CAYNNNNRTG	3 cut(s)	684, 690, 1449
SmlI	CTYRAG	4 cut(s)	122, 775, 1270, 1509
SmoI	CTYRAG	4 cut(s)	122, 775, 1270, 1509
SsiI	CCGC	3 cut(s)	55, 402, 971
SspI	AATATT	1 cut(s)	1195
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	4 cut(s)	303, 897, 1105, 1347
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	4 cut(s)	516, 727, 1146, 1395
TaiI	ACGT	4 cut(s)	382, 721, 1027, 1096
TaqI	TCGA	3 cut(s)	568, 664, 840
TatI	WGTACW	3 cut(s)	339, 694, 1163
TfiI	GAWTC	4 cut(s)	481, 780, 1421, 1465
Tru1I	TTAA	6 cut(s)	321, 750, 776, 806, 1079, 1218
Tru9I	TTAA	6 cut(s)	321, 750, 776, 806, 1079, 1218
TscAI	CASTG	3 cut(s)	730, 874, 1522
TseFI	GTSAC	3 cut(s)	57, 719, 918
TseI	GCWGC	3 cut(s)	88, 91, 467
Tsp45I	GTSAC	3 cut(s)	57, 719, 918
TspDTI	ATGAA	6 cut(s)	248, 339, 377, 544, 717, 873
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	3 cut(s)	730, 874, 1522
Van91I	CCANNNNNTGG	1 cut(s)	1135
Vha464I	CTTAAG	1 cut(s)	775
VpaK11BI	GGWCC	2 cut(s)	516, 913
VspI	ATTAAT	1 cut(s)	1218
XapI	RAATTY	3 cut(s)	7, 810, 1282
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.