Rmu_sc0003642.1_g000001

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003642.1
OG0011770
Physical Location & Seq
Reverse (-)
950 .. 8045
7096 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1611 bp
atgacgaatttcacaattgcattgagagaaatcggaacatacaaggaagttttgcggtcacaggtagagcacatgctaaatgataggctgctgcaatttgtaaatgttgacctccaagatctcaaggttactgctctctccgatattgaggcgaaaaagaagtttgagtttcaggaagctgttagtggggtgatggatgctcatcttcgttacttcaaacagggatatgagctactacacacaatggaaccctatattcatcaggttttggagtatgcacaacatacgagagaaagtgccaaccaggaacagatatcgcttaatgaaagaataatagagtacagaaggcagattgatagggaaagtaggcagtccttacgtggtgttcatggttgttttagcggagatggtatgcagactttggctagaagatcaaataaactgatagaggaagtgatgcaatctgctgcaaaggggaagattcaaaccattcgtcaaggatatctctcaaaacggtcctccaatttgagaggcgactggaaaagaaggtatttcattcttgatagtcgagggatgctgtattactatcgcaaaccatggaaccggtcatcttcttctccacagaagaataattccaccgactatggctctgggattttgagtcgatggctttcttcccactatcatggtggtgtacatgatgaaaaatccgttgcacgtcacactgtgaacttgctgacatcaacaattaaggttgatgcagaccagacagacttaagattctgcttcaggattatatcacctttaaaaatttacactttgcaggcagagaatgcactcgaccaaatggattggattgagaaaatcactggagtaatttcttcattattgagtttccaggcacctgagagggaccagtcaccaaaaatcttcactaataattatttgcgtacctatagaagtttgcaaccgcataagccgagtgtgaaaactgagaagccaattgagatattgagaagagtacgtggtaatgacaagtgtgctgattgtggggcacctgacccagattgggcatccttaaaccttgaaaaacgttttgttcgccccggaaagatcagtcagaaactccaccctgtggagcaacagttgtggaaaagtgtctgtactaatgacaagcaagctgtttactgcaatattgtcagctttgaagctgatattaatgctgtatgtgggaaagcattatgtgataattcaatagacaagccttcctcaagtaattcaaatttatcaagtagaagtgaagatcgcctcatagaaaacatccctgagggttgttccctgcttcacctggcctgccaaattgctgatattggcatggtggagttacttttacagtatggtgcaaatataaatgcttctgattcaaaaggccaaacgccactccattattgtgttatgagagggaatcctgctattacaaagatgcttctcacgagaggagcagatcctcaagccactgacagagaaggtaaaacaccatgtaagcttgtatcagagtcagccttgaatgacaatgggatgctttctatgctgacaaactcaggcagatga

Protein Analysis

536

Amino Acids

60.97

Weight (kDa)

8.89

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAR_3 PF16746 43 - 104 9.2e-10 BAR domain of APPL family
PH PF00169 164 - 293 1.3e-11 PH domain
Ank_5 PF13857 439 - 484 7.1e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 440 - 507 5.4e-13 Ankyrin repeats (3 copies)
Ank PF00023 444 - 474 2.1e-06 Ankyrin repeat
Ank_4 PF13637 448 - 497 1.6e-10 Ankyrin repeats (many copies)
Ank_5 PF13857 463 - 513 4.3e-08 Ankyrin repeats (many copies)
Ank PF00023 477 - 508 1.9e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011770)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61980
fragaria_vesca FvH4_5g09370 FvH4_5g09370 FvH4_5g09370
malus_domestica MD06G1131800.v1.1 MD14G1148100.v1.1
prunus_persica Prupe.5G142800_v2.0.a1
pyrus_communis pycom06g12340 pycom14g12290
rosa_chinensis RchiOBHm_Chr7g0188801
rosa_laevigata RLG00000004658
rosa_multiflora Rmu_sc0003642.1_g000001
rosa_roxburghii Rroxscaffold_3G00266010
rosa_rugosa Rorug06G0494100
rosa_samantha Rh7AG098800 Rh7BG100500 Rh7CG102000 Rh7DG100600
rosa_wichuraiana Rw7G008510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 901, 1054
AccB7I CCANNNNNTGG 1 cut(s) 1135
AciI CCGC 3 cut(s) 55, 402, 971
AclI AACGTT 1 cut(s) 1093
AclWI GGATC 1 cut(s) 1499
AcsI RAATTY 3 cut(s) 7, 810, 1282
AcuI CTGAAG 1 cut(s) 772
AdeI CACNNNGTG 2 cut(s) 727, 1135
AfaI GTAC 5 cut(s) 341, 696, 952, 1023, 1165
AfiI CCNNNNNNNGG 2 cut(s) 1069, 1135
AflII CTTAAG 1 cut(s) 775
AgeI ACCGGT 1 cut(s) 603
AgsI TTSAA 8 cut(s) 217, 485, 1088, 1208, 1254, 1281, 1425, 1567
AjiI CACGTC 1 cut(s) 719
AjnI CCWGG 3 cut(s) 303, 897, 1347
AluBI AGCT 6 cut(s) 179, 232, 1181, 1203, 1211, 1546
AluI AGCT 6 cut(s) 179, 232, 1181, 1203, 1211, 1546
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 1 cut(s) 1499
AoxI GGCC 2 cut(s) 1350, 1429
ApeKI GCWGC 3 cut(s) 88, 91, 467
ApoI RAATTY 3 cut(s) 7, 810, 1282
ArsI GACNNNNNNTTYG 2 cut(s) 478, 510
AseI ATTAAT 1 cut(s) 1218
AsiGI ACCGGT 1 cut(s) 603
AspS9I GGNCC 2 cut(s) 516, 913
AsuC2I CCSGG 1 cut(s) 1107
AsuHPI GGTGA 4 cut(s) 202, 792, 912, 1337
AvaII GGWCC 2 cut(s) 516, 913
AxyI CCTNAGG 1 cut(s) 1326
BaeGI GKGCMC 1 cut(s) 1057
BanI GGYRCC 2 cut(s) 901, 1054
BauI CACGAG 1 cut(s) 1492
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 75, 78, 454
BccI CCATC 3 cut(s) 187, 401, 660
BciT130I CCWGG 3 cut(s) 305, 899, 1349
BcnI CCSGG 1 cut(s) 1107
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 955
BfrI CTTAAG 1 cut(s) 775
BglII AGATCT 1 cut(s) 118
BisI GCNGC 3 cut(s) 89, 92, 468
BlsI GCNGC 3 cut(s) 90, 93, 469
Bme1390I CCNGG 4 cut(s) 305, 899, 1107, 1349
Bme18I GGWCC 2 cut(s) 516, 913
BmgBI CACGTC 1 cut(s) 719
BmgT120I GGNCC 2 cut(s) 516, 913
BmiI GGNNCC 5 cut(s) 249, 602, 903, 914, 1056
BmrFI CCNGG 4 cut(s) 305, 899, 1107, 1349
BmsI GCATC 7 cut(s) 187, 447, 564, 748, 1082, 1473, 1569
BpmI CTGGAG 1 cut(s) 891
BpuEI CTTGAG 3 cut(s) 107, 1255, 1494
BpuMI CCSGG 1 cut(s) 1107
BsaAI YACGTR 2 cut(s) 380, 1025
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 596, 1105
BsaWI WCCGGW 1 cut(s) 603
BsaXI ACNNNNNCTCC 2 cut(s) 1130, 1160
Bsc4I CCNNNNNNNGG 2 cut(s) 1069, 1135
Bse118I RCCGGY 1 cut(s) 603
Bse1I ACTGG 3 cut(s) 542, 874, 916
Bse21I CCTNAGG 1 cut(s) 1326
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 3 cut(s) 305, 899, 1349
BseDI CCNNGG 2 cut(s) 596, 1105
BseGI GGATG 5 cut(s) 202, 579, 1073, 1320, 1584
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 1069, 1135
BseMII CTCAG 3 cut(s) 897, 984, 1317
BseNI ACTGG 3 cut(s) 542, 874, 916
BseRI GAGGAG 1 cut(s) 1512
BseSI GKGCMC 1 cut(s) 1057
BseXI GCAGC 3 cut(s) 75, 78, 454
BshFI GGCC 2 cut(s) 1352, 1431
BshNI GGYRCC 2 cut(s) 901, 1054
BshTI ACCGGT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 2 cut(s) 604, 1107
BslFI GGGAC 1 cut(s) 926
BslI CCNNNNNNNGG 2 cut(s) 1069, 1135
BsmFI GGGAC 1 cut(s) 926
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 2 cut(s) 1352, 1431
Bsp1286I GDGCHC 2 cut(s) 72, 1057
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 5 cut(s) 118, 431, 1113, 1303, 1504
Bsp19I CCATGG 1 cut(s) 596
BspACI CCGC 3 cut(s) 55, 402, 971
BspANI GGCC 2 cut(s) 1352, 1431
BspCNI CTCAG 3 cut(s) 898, 985, 1318
BspLI GGNNCC 5 cut(s) 249, 602, 903, 914, 1056
BspPI GGATC 1 cut(s) 1499
BspT107I GGYRCC 2 cut(s) 901, 1054
BspTI CTTAAG 1 cut(s) 775
BsrFI RCCGGY 1 cut(s) 603
BsrGI TGTACA 1 cut(s) 694
BsrI ACTGG 3 cut(s) 542, 874, 916
BssAI RCCGGY 1 cut(s) 603
BssECI CCNNGG 2 cut(s) 596, 1105
BssMI GATC 5 cut(s) 118, 431, 1113, 1303, 1504
BssSI CACGAG 1 cut(s) 1492
BssT1I CCWWGG 1 cut(s) 596
Bst2BI CACGAG 1 cut(s) 1492
Bst2UI CCWGG 3 cut(s) 305, 899, 1349
Bst4CI ACNGT 4 cut(s) 516, 727, 1146, 1395
Bst6I CTCTTC 1 cut(s) 1012
BstAFI CTTAAG 1 cut(s) 775
BstAPI GCANNNNNTGC 1 cut(s) 833
BstAUI TGTACA 1 cut(s) 694
BstBAI YACGTR 2 cut(s) 380, 1025
BstC8I GCNNGC 3 cut(s) 825, 1179, 1354
BstDEI CTNAG 4 cut(s) 906, 993, 1326, 1600
BstDSI CCRYGG 1 cut(s) 596
BstF5I GGATG 5 cut(s) 202, 579, 1073, 1320, 1584
BstKTI GATC 5 cut(s) 121, 434, 1116, 1306, 1507
BstMBI GATC 5 cut(s) 118, 431, 1113, 1303, 1504
BstMWI GCNNNNNNNGC 2 cut(s) 833, 1588
BstNI CCWGG 3 cut(s) 305, 899, 1349
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 4 cut(s) 303, 897, 1105, 1347
BstSFI CTRYAG 1 cut(s) 955
BstSLI GKGCMC 1 cut(s) 1057
BstV1I GCAGC 3 cut(s) 75, 78, 454
BstX2I RGATCY 2 cut(s) 118, 1504
BstXI CCANNNNNNTGG 1 cut(s) 686
BstYI RGATCY 2 cut(s) 118, 1504
Bsu36I CCTNAGG 1 cut(s) 1326
BsuRI GGCC 2 cut(s) 1352, 1431
BtgI CCRYGG 1 cut(s) 596
BtrI CACGTC 1 cut(s) 719
BtsCI GGATG 5 cut(s) 202, 579, 1073, 1320, 1584
BtsIMutI CAGTG 3 cut(s) 723, 867, 1515
Cac8I GCNNGC 3 cut(s) 825, 1179, 1354
Cfr10I RCCGGY 1 cut(s) 603
Cfr13I GGNCC 2 cut(s) 516, 913
Csp6I GTAC 5 cut(s) 340, 695, 951, 1022, 1164
CspAI ACCGGT 1 cut(s) 603
CspCI CAANNNNNGTGG 2 cut(s) 1130, 1165
CviAII CATG 7 cut(s) 73, 389, 597, 686, 698, 1375, 1539
CviQI GTAC 5 cut(s) 340, 695, 951, 1022, 1164
DdeI CTNAG 4 cut(s) 906, 993, 1326, 1600
DpnI GATC 5 cut(s) 120, 433, 1115, 1305, 1506
DpnII GATC 5 cut(s) 118, 431, 1113, 1303, 1504
DraI TTTAAA 1 cut(s) 807
DraIII CACNNNGTG 2 cut(s) 727, 1135
Eam1104I CTCTTC 1 cut(s) 1012
EarI CTCTTC 1 cut(s) 1012
Eco130I CCWWGG 1 cut(s) 596
Eco32I GATATC 2 cut(s) 315, 503
Eco47I GGWCC 2 cut(s) 516, 913
Eco57I CTGAAG 1 cut(s) 772
Eco81I CCTNAGG 1 cut(s) 1326
EcoRII CCWGG 3 cut(s) 303, 897, 1347
EcoRV GATATC 2 cut(s) 315, 503
EcoT14I CCWWGG 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 7 cut(s) 76, 392, 600, 689, 701, 1378, 1542
FaqI GGGAC 1 cut(s) 926
FatI CATG 7 cut(s) 72, 388, 596, 685, 697, 1374, 1538
Fnu4HI GCNGC 3 cut(s) 89, 92, 468
FokI GGATG 5 cut(s) 209, 586, 1060, 1307, 1591
Fsp4HI GCNGC 3 cut(s) 89, 92, 468
FspBI CTAG 1 cut(s) 426
GluI GCNGC 3 cut(s) 89, 92, 468
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 2 cut(s) 1352, 1431
HapII CCGG 2 cut(s) 604, 1107
Hin1II CATG 7 cut(s) 76, 392, 600, 689, 701, 1378, 1542
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 1544
HinfI GANTC 6 cut(s) 481, 661, 780, 1421, 1465, 1556
HpaII CCGG 2 cut(s) 604, 1107
HphI GGTGA 4 cut(s) 202, 792, 912, 1337
Hpy166II GTNNAC 4 cut(s) 109, 695, 730, 1186
Hpy188I TCNGA 5 cut(s) 35, 142, 1122, 1420, 1555
Hpy188III TCNNGA 4 cut(s) 173, 560, 790, 1492
Hpy8I GTNNAC 4 cut(s) 109, 695, 730, 1186
HpyAV CCTTC 4 cut(s) 339, 540, 1275, 1520
HpyCH4III ACNGT 4 cut(s) 516, 727, 1146, 1395
HpyCH4IV ACGT 4 cut(s) 379, 718, 1024, 1093
HpyF10VI GCNNNNNNNGC 2 cut(s) 833, 1588
HpyF3I CTNAG 4 cut(s) 906, 993, 1326, 1600
HpySE526I ACGT 4 cut(s) 379, 718, 1024, 1093
Hsp92II CATG 7 cut(s) 76, 392, 600, 689, 701, 1378, 1542
Kzo9I GATC 5 cut(s) 118, 431, 1113, 1303, 1504
LmnI GCTCC 2 cut(s) 1138, 1499
Lsp1109I GCAGC 3 cut(s) 75, 78, 454
LweI GCATC 7 cut(s) 187, 447, 564, 748, 1082, 1473, 1569
MaeI CTAG 1 cut(s) 426
MaeII ACGT 4 cut(s) 379, 718, 1024, 1093
MaeIII GTNAC 6 cut(s) 57, 127, 209, 719, 918, 1383
MalI GATC 5 cut(s) 120, 433, 1115, 1305, 1506
MboI GATC 5 cut(s) 118, 431, 1113, 1303, 1504
MfeI CAATTG 2 cut(s) 15, 1002
MflI RGATCY 2 cut(s) 118, 1504
MhlI GDGCHC 2 cut(s) 72, 1057
MlyI GAGTC 2 cut(s) 670, 1565
MseI TTAA 6 cut(s) 321, 750, 776, 806, 1079, 1218
MslI CAYNNNNRTG 3 cut(s) 684, 690, 1449
MspCI CTTAAG 1 cut(s) 775
MspI CCGG 2 cut(s) 604, 1107
MspR9I CCNGG 4 cut(s) 305, 899, 1107, 1349
MunI CAATTG 2 cut(s) 15, 1002
Mva1269I GAATGC 1 cut(s) 838
MvaI CCWGG 3 cut(s) 305, 899, 1349
MwoI GCNNNNNNNGC 2 cut(s) 833, 1588
NciI CCSGG 1 cut(s) 1107
NcoI CCATGG 1 cut(s) 596
NdeII GATC 5 cut(s) 118, 431, 1113, 1303, 1504
NlaIII CATG 7 cut(s) 76, 392, 600, 689, 701, 1378, 1542
NlaIV GGNNCC 5 cut(s) 249, 602, 903, 914, 1056
NmeAIII GCCGAG 1 cut(s) 1005
NmuCI GTSAC 3 cut(s) 57, 719, 918
NspI RCATGY 1 cut(s) 76
PctI GAATGC 1 cut(s) 838
PfeI GAWTC 4 cut(s) 481, 780, 1421, 1465
PflMI CCANNNNNTGG 1 cut(s) 1135
PinAI ACCGGT 1 cut(s) 603
PkrI GCNGC 3 cut(s) 90, 93, 469
PleI GAGTC 2 cut(s) 669, 1564
PpsI GAGTC 2 cut(s) 669, 1564
Ppu21I YACGTR 2 cut(s) 380, 1025
PshBI ATTAAT 1 cut(s) 1218
Psp1406I AACGTT 1 cut(s) 1093
Psp6I CCWGG 3 cut(s) 303, 897, 1347
PspGI CCWGG 3 cut(s) 303, 897, 1347
PspN4I GGNNCC 5 cut(s) 249, 602, 903, 914, 1056
PspPI GGNCC 2 cut(s) 516, 913
PsuI RGATCY 2 cut(s) 118, 1504
RsaI GTAC 5 cut(s) 341, 696, 952, 1023, 1165
RsaNI GTAC 5 cut(s) 340, 695, 951, 1022, 1164
RseI CAYNNNNRTG 3 cut(s) 684, 690, 1449
SaqAI TTAA 6 cut(s) 321, 750, 776, 806, 1079, 1218
SatI GCNGC 3 cut(s) 89, 92, 468
Sau3AI GATC 5 cut(s) 118, 431, 1113, 1303, 1504
Sau96I GGNCC 2 cut(s) 516, 913
SchI GAGTC 2 cut(s) 670, 1565
ScrFI CCNGG 4 cut(s) 305, 899, 1107, 1349
SduI GDGCHC 2 cut(s) 72, 1057
SfaNI GCATC 7 cut(s) 187, 447, 564, 748, 1082, 1473, 1569
SfcI CTRYAG 1 cut(s) 955
SinI GGWCC 2 cut(s) 516, 913
SmiMI CAYNNNNRTG 3 cut(s) 684, 690, 1449
SmlI CTYRAG 4 cut(s) 122, 775, 1270, 1509
SmoI CTYRAG 4 cut(s) 122, 775, 1270, 1509
SsiI CCGC 3 cut(s) 55, 402, 971
SspI AATATT 1 cut(s) 1195
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 4 cut(s) 303, 897, 1105, 1347
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 4 cut(s) 516, 727, 1146, 1395
TaiI ACGT 4 cut(s) 382, 721, 1027, 1096
TaqI TCGA 3 cut(s) 568, 664, 840
TatI WGTACW 3 cut(s) 339, 694, 1163
TfiI GAWTC 4 cut(s) 481, 780, 1421, 1465
Tru1I TTAA 6 cut(s) 321, 750, 776, 806, 1079, 1218
Tru9I TTAA 6 cut(s) 321, 750, 776, 806, 1079, 1218
TscAI CASTG 3 cut(s) 730, 874, 1522
TseFI GTSAC 3 cut(s) 57, 719, 918
TseI GCWGC 3 cut(s) 88, 91, 467
Tsp45I GTSAC 3 cut(s) 57, 719, 918
TspDTI ATGAA 6 cut(s) 248, 339, 377, 544, 717, 873
TspGWI ACGGA 1 cut(s) 700
TspRI CASTG 3 cut(s) 730, 874, 1522
Van91I CCANNNNNTGG 1 cut(s) 1135
Vha464I CTTAAG 1 cut(s) 775
VpaK11BI GGWCC 2 cut(s) 516, 913
VspI ATTAAT 1 cut(s) 1218
XapI RAATTY 3 cut(s) 7, 810, 1282
XceI RCATGY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.