Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003735.1

Orthogroup ID

OG0014613

Physical Location & Seq

Genomic Coordinates Reverse (-)

35575 .. 36892

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgctttggatgatctcagttgactccttactgtgtatttgcatttactgtggagtatatctgactagaagtaagattacatattcatattgcaggccaatatatgctggaaatgcactttgtactgttcgatacactggtgttggcccttgtctgttgaccattagagcaacatcctttccggtttctcccatcacatctgattcaaaatctaatgaagcttccatctcccaggttgatctctccacctttggtgaagattctgttggcaaatctcgatatgttaagcacacatcccaggatatagagcgccctgatcttggaaatgcccgtgttgtgattacaggtgggcgtgcgctaaaaagtgctgaaaacttcaaaatgatagaaaagcttgcagaaaaacttggtgcagctggatatgttcctaatgacctgcaggcggcgatggctgctctgtggttgccggacgaaccctctgaacatcccgaaccactttccagttgggtggactcgccggtaaccactttgcaatcgaccttgatcggactaccactttgcagtcgaccaggctgcccagacctccgacctcgatctctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0019395 GO:0019752 GO:0022900 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF ETF_alpha

Protein Analysis

200

Amino Acids

21.73

Weight (kDa)

6.71

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF_alpha	PF00766	106 - 139	2.5e-07	Electron transfer flavoprotein FAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50940
fragaria_vesca	FvH4_3g22000 FvH4_3g22000
malus_domestica	MD03G1209400.v1.1
prunus_persica	Prupe.4G205700_v2.0.a1
pyrus_communis	pycom03g15820
rosa_chinensis	RchiOBHm_Chr5g0037851
rosa_laevigata	RLG00000033817
rosa_multiflora	Rmu_sc0003735.1_g000010 Rmu_sc0005416.1_g000017
rosa_roxburghii	Rroxscaffold_1G00043070
rosa_rugosa	Rorug05G0168100
rosa_samantha	Rh5AG257000 Rh5BG259400 Rh5CG292400 Rh5DG269300
rosa_wichuraiana	Rw5G023830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	565
AciI	CCGC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	320, 442
AgsI	TTSAA	2 cut(s)	207, 379
AjnI	CCWGG	3 cut(s)	231, 297, 568
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	3 cut(s)	221, 394, 416
AluI	AGCT	3 cut(s)	221, 394, 416
AoxI	GGCC	2 cut(s)	95, 145
ApeKI	GCWGC	3 cut(s)	413, 452, 573
ArsI	GACNNNNNNTTYG	2 cut(s)	540, 572
AspLEI	GCGC	2 cut(s)	312, 358
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	124, 157
BarI	GAAGNNNNNNTAC	2 cut(s)	61, 93
BbvI	GCAGC	3 cut(s)	425, 439, 560
BccI	CCATC	3 cut(s)	200, 233, 442
BcgI	CGANNNNNNTGC	2 cut(s)	555, 589
BciT130I	CCWGG	3 cut(s)	233, 299, 570
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	444
BisI	GCNGC	4 cut(s)	414, 444, 453, 574
BlsI	GCNGC	4 cut(s)	415, 445, 454, 575
Bme1390I	CCNGG	3 cut(s)	233, 299, 570
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	3 cut(s)	233, 299, 570
BsaJI	CCNNGG	2 cut(s)	231, 297
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 442
Bse118I	RCCGGY	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	142, 501
BseBI	CCWGG	3 cut(s)	233, 299, 570
BseDI	CCNNGG	2 cut(s)	231, 297
BseGI	GGATG	4 cut(s)	15, 173, 293, 484
BseLI	CCNNNNNNNGG	2 cut(s)	320, 442
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	142, 501
BseXI	GCAGC	3 cut(s)	425, 439, 560
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	97, 147
BsiSI	CCGG	3 cut(s)	182, 467, 518
BslI	CCNNNNNNNGG	2 cut(s)	320, 442
BsnI	GGCC	2 cut(s)	97, 147
Bsp143I	GATC	5 cut(s)	12, 238, 316, 543, 593
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	2 cut(s)	97, 147
BspCNI	CTCAG	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	142, 501
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	2 cut(s)	231, 297
BssMI	GATC	5 cut(s)	12, 238, 316, 543, 593
Bst2UI	CCWGG	3 cut(s)	233, 299, 570
Bst4CI	ACNGT	3 cut(s)	33, 50, 127
BstC8I	GCNNGC	4 cut(s)	95, 354, 396, 441
BstDEI	CTNAG	1 cut(s)	16
BstEII	GGTNACC	1 cut(s)	520
BstF5I	GGATG	4 cut(s)	15, 173, 293, 484
BstH2I	RGCGCY	1 cut(s)	313
BstHHI	GCGC	2 cut(s)	312, 358
BstKTI	GATC	5 cut(s)	15, 241, 319, 546, 596
BstMBI	GATC	5 cut(s)	12, 238, 316, 543, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 449, 452
BstNI	CCWGG	3 cut(s)	233, 299, 570
BstPI	GGTNACC	1 cut(s)	520
BstSCI	CCNGG	3 cut(s)	231, 297, 568
BstSFI	CTRYAG	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	425, 439, 560
BstXI	CCANNNNNNTGG	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	97, 147
BtgZI	GCGATG	1 cut(s)	461
BtsCI	GGATG	4 cut(s)	15, 173, 293, 484
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	95, 354, 396, 441
CfoI	GCGC	2 cut(s)	312, 358
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	123
CviJI	RGCY	7 cut(s)	97, 147, 221, 394, 416, 452, 573
CviKI_1	RGCY	7 cut(s)	97, 147, 221, 394, 416, 452, 573
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	5 cut(s)	14, 240, 318, 545, 595
DpnII	GATC	5 cut(s)	12, 238, 316, 543, 593
Eco91I	GGTNACC	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	520
EcoRII	CCWGG	3 cut(s)	231, 297, 568
FaiI	YATR	8 cut(s)	58, 82, 88, 103, 105, 282, 305, 423
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	4 cut(s)	414, 444, 453, 574
FokI	GGATG	4 cut(s)	22, 160, 280, 471
Fsp4HI	GCNGC	4 cut(s)	414, 444, 453, 574
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	311, 357
GluI	GCNGC	4 cut(s)	414, 444, 453, 574
HaeII	RGCGCY	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	97, 147
HapII	CCGG	3 cut(s)	182, 467, 518
HhaI	GCGC	2 cut(s)	312, 358
Hin6I	GCGC	2 cut(s)	310, 356
HinP1I	GCGC	2 cut(s)	310, 356
HincII	GTYRAC	3 cut(s)	22, 159, 566
HindII	GTYRAC	3 cut(s)	22, 159, 566
HindIII	AAGCTT	2 cut(s)	219, 392
HinfI	GANTC	4 cut(s)	23, 203, 260, 512
HpaII	CCGG	3 cut(s)	182, 467, 518
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	4 cut(s)	22, 159, 511, 566
Hpy188I	TCNGA	5 cut(s)	63, 202, 481, 548, 587
Hpy188III	TCNNGA	2 cut(s)	276, 488
Hpy8I	GTNNAC	4 cut(s)	22, 159, 511, 566
HpyCH4III	ACNGT	3 cut(s)	33, 50, 127
HpyCH4V	TGCA	8 cut(s)	42, 93, 116, 398, 413, 439, 532, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 449, 452
HpyF3I	CTNAG	1 cut(s)	16
HspAI	GCGC	2 cut(s)	310, 356
Kzo9I	GATC	5 cut(s)	12, 238, 316, 543, 593
Lsp1109I	GCAGC	3 cut(s)	425, 439, 560
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	5 cut(s)	14, 240, 318, 545, 595
MboI	GATC	5 cut(s)	12, 238, 316, 543, 593
MboII	GAAGA	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	17, 506
MnlI	CCTC	3 cut(s)	487, 593, 600
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	3 cut(s)	182, 467, 518
MspR9I	CCNGG	3 cut(s)	233, 299, 570
MvaI	CCWGG	3 cut(s)	233, 299, 570
MwoI	GCNNNNNNNGC	3 cut(s)	113, 449, 452
NdeII	GATC	5 cut(s)	12, 238, 316, 543, 593
PfeI	GAWTC	2 cut(s)	203, 260
PkrI	GCNGC	4 cut(s)	415, 445, 454, 575
PleI	GAGTC	2 cut(s)	17, 506
PpsI	GAGTC	2 cut(s)	17, 506
Psp6I	CCWGG	3 cut(s)	231, 297, 568
PspEI	GGTNACC	1 cut(s)	520
PspGI	CCWGG	3 cut(s)	231, 297, 568
PspPI	GGNCC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	441
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	414, 444, 453, 574
Sau3AI	GATC	5 cut(s)	12, 238, 316, 543, 593
Sau96I	GGNCC	1 cut(s)	146
SbfI	CCTGCAGG	1 cut(s)	441
SchI	GAGTC	2 cut(s)	17, 506
ScrFI	CCNGG	3 cut(s)	233, 299, 570
SdaI	CCTGCAGG	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	437
Sse8387I	CCTGCAGG	1 cut(s)	441
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	3 cut(s)	231, 297, 568
TaaI	ACNGT	3 cut(s)	33, 50, 127
TaqI	TCGA	5 cut(s)	130, 277, 536, 565, 592
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	203, 260
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	3 cut(s)	413, 452, 573
TspDTI	ATGAA	2 cut(s)	75, 231
TspRI	CASTG	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XmiI	GTMKAC	1 cut(s)	565
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.