Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003760.1

Orthogroup ID

OG0015298

Physical Location & Seq

Genomic Coordinates Reverse (-)

65893 .. 71304

Gene Structure 5412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggtgaggttgcaggtgcctagcgaggctaacgtgtgcgggggctgtcaacaagggtgtgcgaggcgtgcagggcttgctgtgctgggttgccaaggcaaggctagaagctgtcgaggcgaggctaacgatggaggaagaaaggtgttaacaaggctaaagcactgtgcaaagtcgcaccgagctgtgcgctggaccatgcctccaaccgccatggcctgcacgtcgtcggcgccggcagtcgatggtaattcgtttccagcccagaagccggcgatcctctctctctatctccgtgaaggtgctgccgacgatcttttgcagcccagaagccagcgatcgtcaactcagaggcggcgccacggatcgtgcagccagcggcaacttcatccaactcagagtcgtgcagctccggtgtggcggcttgaagtcgactccggtgccgagtccgggtctgcaacgattgcgacgaccggagttccgccgaggtcgagtaggaaggccaggggattcatgggattttcagcaaatttcggtgggcggcagccggtgacaggattccggcgaccggctttggccggattccggctaaagttggccggaatcatgcgaccggtgaccggaatccggctgccggtgacgggctccggcgaagtctccaataatttctctctctctctaagtaacaaaggggtgagggagtctctctcttctgatcctacaccaacgcatcatagtcttcgtcctccctaccttactcttgggctgagatcgccgttgggattcaaacaaggattactattgtctctggtagcagaagccataaagattacaatggaatgggcggacaaggctgttggatttctattgtcgtatatcagtttatctatattcacttattataccttttgggtcattattctgccatttgtgaacagtgatcactttatccaccgatattttttaccccaagaatatgccatcttaatccctgtatttgctggcatggtgcttctttgctttctctccatattcattggtactctggacttgctggcagagctccagatagaactgagtgatgcacgtatcatagtgaagtttgttgaagatgtgggtcgcctcgtcgggatccaaccagttttgaatgattccattttggcagagtatatcaatgtccttggtagtgctgatgaggcaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006720 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016093 GO:0019348 GO:0019538 GO:0019637 GO:0030234 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0050790 GO:0065007 GO:0065009 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098772 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00563 ko01100 map00510 map00563 map01100

Pfam Domains

Protein Families

DPM2

Protein Analysis

401

Amino Acids

43.54

Weight (kDa)

9.82

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM2	PF07297	282 - 348	1.1e-27	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74340 AT1G74340
malus_domestica	MD06G1025500.v1.1 MD16G1280900.v1.1
prunus_persica	Prupe.5G029600_v2.0.a1
pyrus_communis	pycom06g02060 pycom06g02070
rosa_chinensis	RchiOBHm_Chr7g0211611
rosa_laevigata	RLG00000002991
rosa_multiflora	Rmu_sc0003760.1_g000018 Rmu_sc0004232.1_g000020
rosa_roxburghii	Rroxscaffold_3G00247680
rosa_rugosa	Rorug07G0126300
rosa_samantha	Rh7AG258900 Rh7CG276000
rosa_wichuraiana	Rw7G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4
Acc36I	ACCTGC	1 cut(s)	4
AccB1I	GGYRCC	4 cut(s)	16, 232, 357, 440
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	8 cut(s)	39, 210, 355, 379, 421, 482, 541, 845
AclWI	GGATC	5 cut(s)	271, 373, 710, 1126, 1139
AcoI	YGGCCR	2 cut(s)	576, 597
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	2 cut(s)	233, 358
AfaI	GTAC	1 cut(s)	1042
AflIII	ACRYGT	1 cut(s)	33
AgeI	ACCGGT	1 cut(s)	613
AgsI	TTSAA	4 cut(s)	428, 787, 1109, 1147
AjiI	CACGTC	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	503
AluBI	AGCT	4 cut(s)	111, 185, 410, 1063
AluI	AGCT	4 cut(s)	111, 185, 410, 1063
Alw21I	GWGCWC	1 cut(s)	1065
Alw26I	GTCTC	3 cut(s)	661, 708, 810
AlwI	GGATC	5 cut(s)	271, 373, 710, 1126, 1139
AoxI	GGCC	4 cut(s)	216, 501, 576, 597
ApeKI	GCWGC	6 cut(s)	305, 322, 372, 407, 544, 631
ApoI	RAATTY	1 cut(s)	529
AsiGI	ACCGGT	1 cut(s)	613
AspLEI	GCGC	3 cut(s)	192, 235, 360
AspS9I	GGNCC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	5 cut(s)	16, 562, 628, 649, 706
AvaII	GGWCC	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	1131
BanI	GGYRCC	4 cut(s)	16, 232, 357, 440
BanII	GRGCYC	2 cut(s)	647, 1065
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	1065
BbvI	GCAGC	6 cut(s)	292, 334, 384, 419, 556, 618
BccI	CCATC	3 cut(s)	125, 239, 989
BceAI	ACGGC	1 cut(s)	760
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	1 cut(s)	940
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	661, 708, 810
BfaI	CTAG	2 cut(s)	21, 105
BfoI	RGCGCY	2 cut(s)	236, 361
BfuAI	ACCTGC	1 cut(s)	4
Bme1390I	CCNGG	2 cut(s)	451, 505
Bme18I	GGWCC	1 cut(s)	195
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	6 cut(s)	18, 234, 359, 442, 646, 1133
BmrFI	CCNGG	2 cut(s)	451, 505
BmsI	GCATC	2 cut(s)	739, 1072
BpiI	GAAGAC	1 cut(s)	731
BplI	GAGNNNNNCTC	4 cut(s)	688, 720, 692, 724
BpmI	CTGGAG	1 cut(s)	1049
BpuMI	CCSGG	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	1088
BsaHI	GRCGYC	2 cut(s)	233, 358
BsaJI	CCNNGG	6 cut(s)	94, 213, 361, 485, 504, 1180
BsaWI	WCCGGW	5 cut(s)	412, 437, 473, 613, 620
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse118I	RCCGGY	6 cut(s)	235, 271, 547, 568, 613, 634
Bse1I	ACTGG	1 cut(s)	1139
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	6 cut(s)	94, 213, 361, 485, 504, 1180
BseGI	GGATG	1 cut(s)	388
BseMII	CTCAG	4 cut(s)	362, 410, 758, 1067
BseNI	ACTGG	1 cut(s)	1139
BseXI	GCAGC	6 cut(s)	292, 334, 384, 419, 556, 618
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	4 cut(s)	90, 205, 391, 426
Bsh1285I	CGRYCG	4 cut(s)	341, 474, 569, 614
BshFI	GGCC	4 cut(s)	218, 503, 578, 599
BshNI	GGYRCC	4 cut(s)	16, 232, 357, 440
BshTI	ACCGGT	1 cut(s)	613
BsiEI	CGRYCG	4 cut(s)	341, 474, 569, 614
BsiHKAI	GWGCWC	1 cut(s)	1065
BsmAI	GTCTC	3 cut(s)	661, 708, 810
BsnI	GGCC	4 cut(s)	218, 503, 578, 599
Bsp1286I	GDGCHC	2 cut(s)	647, 1065
Bsp143I	GATC	8 cut(s)	276, 313, 338, 365, 715, 770, 940, 1131
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	8 cut(s)	39, 210, 355, 379, 421, 482, 541, 845
BspANI	GGCC	4 cut(s)	218, 503, 578, 599
BspCNI	CTCAG	4 cut(s)	361, 409, 759, 1068
BspLI	GGNNCC	6 cut(s)	18, 234, 359, 442, 646, 1133
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	5 cut(s)	271, 373, 710, 1126, 1139
BspT107I	GGYRCC	4 cut(s)	16, 232, 357, 440
BsrFI	RCCGGY	6 cut(s)	235, 271, 547, 568, 613, 634
BsrI	ACTGG	1 cut(s)	1139
BssAI	RCCGGY	6 cut(s)	235, 271, 547, 568, 613, 634
BssECI	CCNNGG	6 cut(s)	94, 213, 361, 485, 504, 1180
BssMI	GATC	8 cut(s)	276, 313, 338, 365, 715, 770, 940, 1131
BssNI	GRCGYC	2 cut(s)	233, 358
BssT1I	CCWWGG	3 cut(s)	94, 213, 1180
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	2 cut(s)	167, 938
Bst6I	CTCTTC	1 cut(s)	715
BstACI	GRCGYC	2 cut(s)	233, 358
BstAPI	GCANNNNNTGC	2 cut(s)	77, 464
BstBAI	YACGTR	1 cut(s)	1088
BstC8I	GCNNGC	9 cut(s)	69, 78, 220, 237, 273, 335, 377, 1003, 1056
BstDEI	CTNAG	5 cut(s)	348, 396, 680, 767, 1076
BstDSI	CCRYGG	2 cut(s)	213, 361
BstEII	GGTNACC	1 cut(s)	616
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	2 cut(s)	236, 361
BstHHI	GCGC	3 cut(s)	192, 235, 360
BstKTI	GATC	8 cut(s)	279, 316, 341, 368, 718, 773, 943, 1134
BstMAI	GTCTC	3 cut(s)	661, 708, 810
BstMBI	GATC	8 cut(s)	276, 313, 338, 365, 715, 770, 940, 1131
BstMCI	CGRYCG	4 cut(s)	341, 474, 569, 614
BstNI	CCWGG	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	449, 503
BstV1I	GCAGC	6 cut(s)	292, 334, 384, 419, 556, 618
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	1131
BstYI	RGATCY	1 cut(s)	1131
BsuRI	GGCC	4 cut(s)	218, 503, 578, 599
BtgI	CCRYGG	2 cut(s)	213, 361
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	163, 943
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	9 cut(s)	69, 78, 220, 237, 273, 335, 377, 1003, 1056
CfoI	GCGC	3 cut(s)	192, 235, 360
Cfr10I	RCCGGY	6 cut(s)	235, 271, 547, 568, 613, 634
Cfr13I	GGNCC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	1041
CspAI	ACCGGT	1 cut(s)	613
CviAII	CATG	5 cut(s)	199, 214, 514, 607, 1006
CviQI	GTAC	1 cut(s)	1041
DdeI	CTNAG	5 cut(s)	348, 396, 680, 767, 1076
DinI	GGCGCC	2 cut(s)	234, 359
DpnI	GATC	8 cut(s)	278, 315, 340, 367, 717, 772, 942, 1133
DpnII	GATC	8 cut(s)	276, 313, 338, 365, 715, 770, 940, 1131
EaeI	YGGCCR	2 cut(s)	576, 597
Eam1104I	CTCTTC	1 cut(s)	715
EarI	CTCTTC	1 cut(s)	715
EciI	GGCGGA	2 cut(s)	471, 860
Ecl136II	GAGCTC	1 cut(s)	1063
Eco130I	CCWWGG	3 cut(s)	94, 213, 1180
Eco24I	GRGCYC	2 cut(s)	647, 1065
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	1063
Eco91I	GGTNACC	1 cut(s)	616
EcoICRI	GAGCTC	1 cut(s)	1063
EcoO65I	GGTNACC	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	3 cut(s)	94, 213, 1180
EcoT38I	GRGCYC	2 cut(s)	647, 1065
EgeI	GGCGCC	2 cut(s)	234, 359
EheI	GGCGCC	2 cut(s)	234, 359
ErhI	CCWWGG	3 cut(s)	94, 213, 1180
FaeI	CATG	5 cut(s)	202, 217, 517, 610, 1009
FatI	CATG	5 cut(s)	198, 213, 513, 606, 1005
FauI	CCCGC	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	940
FblI	GTMKAC	1 cut(s)	432
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	2 cut(s)	647, 1065
FspBI	CTAG	2 cut(s)	21, 105
GlaI	GCGC	3 cut(s)	191, 234, 359
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	1049
HaeII	RGCGCY	2 cut(s)	236, 361
HaeIII	GGCC	4 cut(s)	218, 503, 578, 599
HhaI	GCGC	3 cut(s)	192, 235, 360
Hin1I	GRCGYC	2 cut(s)	233, 358
Hin1II	CATG	5 cut(s)	202, 217, 517, 610, 1009
Hin6I	GCGC	3 cut(s)	190, 233, 358
HinP1I	GCGC	3 cut(s)	190, 233, 358
HincII	GTYRAC	4 cut(s)	50, 150, 345, 433
HindII	GTYRAC	4 cut(s)	50, 150, 345, 433
HpaI	GTTAAC	1 cut(s)	150
HphI	GGTGA	5 cut(s)	16, 562, 628, 649, 706
Hpy166II	GTNNAC	5 cut(s)	50, 150, 345, 433, 934
Hpy188I	TCNGA	3 cut(s)	351, 399, 715
Hpy188III	TCNNGA	3 cut(s)	1046, 1066, 1129
Hpy8I	GTNNAC	5 cut(s)	50, 150, 345, 433, 934
Hpy99I	CGWCG	5 cut(s)	229, 232, 314, 472, 1130
HpyAV	CCTTC	2 cut(s)	293, 493
HpyCH4III	ACNGT	2 cut(s)	167, 938
HpyCH4IV	ACGT	3 cut(s)	33, 224, 1087
HpyCH4V	TGCA	9 cut(s)	13, 71, 170, 222, 322, 372, 407, 458, 1085
HpyF3I	CTNAG	5 cut(s)	348, 396, 680, 767, 1076
HpySE526I	ACGT	3 cut(s)	33, 224, 1087
Hsp92I	GRCGYC	2 cut(s)	233, 358
Hsp92II	CATG	5 cut(s)	202, 217, 517, 610, 1009
HspAI	GCGC	3 cut(s)	190, 233, 358
KasI	GGCGCC	2 cut(s)	232, 357
KroI	GCCGGC	2 cut(s)	235, 271
KroNI	GCCGGC	2 cut(s)	237, 273
Ksp22I	TGATCA	1 cut(s)	940
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	8 cut(s)	276, 313, 338, 365, 715, 770, 940, 1131
LmnI	GCTCC	3 cut(s)	415, 650, 1068
Lsp1109I	GCAGC	6 cut(s)	292, 334, 384, 419, 556, 618
LweI	GCATC	2 cut(s)	739, 1072
MaeI	CTAG	2 cut(s)	21, 105
MaeII	ACGT	3 cut(s)	33, 224, 1087
MaeIII	GTNAC	4 cut(s)	550, 616, 637, 683
MalI	GATC	8 cut(s)	278, 315, 340, 367, 717, 772, 942, 1133
MboI	GATC	8 cut(s)	276, 313, 338, 365, 715, 770, 940, 1131
MboII	GAAGA	4 cut(s)	150, 702, 731, 1121
MflI	RGATCY	1 cut(s)	1131
MhlI	GDGCHC	2 cut(s)	647, 1065
MluCI	AATT	3 cut(s)	250, 529, 664
Mly113I	GGCGCC	2 cut(s)	233, 358
MlyI	GAGTC	4 cut(s)	409, 428, 455, 710
MmeI	TCCRAC	4 cut(s)	230, 416, 838, 1159
MroNI	GCCGGC	2 cut(s)	235, 271
MseI	TTAA	2 cut(s)	149, 986
MspA1I	CMGCKG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	451, 505
MvaI	CCWGG	1 cut(s)	505
NaeI	GCCGGC	2 cut(s)	237, 273
NarI	GGCGCC	2 cut(s)	233, 358
NciI	CCSGG	1 cut(s)	451
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	8 cut(s)	276, 313, 338, 365, 715, 770, 940, 1131
NgoMIV	GCCGGC	2 cut(s)	235, 271
NlaIII	CATG	5 cut(s)	202, 217, 517, 610, 1009
NlaIV	GGNNCC	6 cut(s)	18, 234, 359, 442, 646, 1133
NmeAIII	GCCGAG	2 cut(s)	469, 510
NmuCI	GTSAC	3 cut(s)	550, 616, 637
PaqCI	CACCTGC	1 cut(s)	4
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PdiI	GCCGGC	2 cut(s)	237, 273
PfeI	GAWTC	7 cut(s)	510, 558, 582, 603, 624, 783, 1151
PinAI	ACCGGT	1 cut(s)	613
Ple19I	CGATCG	1 cut(s)	341
PleI	GAGTC	4 cut(s)	408, 428, 454, 709
PluTI	GGCGCC	2 cut(s)	236, 361
PpsI	GAGTC	4 cut(s)	408, 428, 454, 709
Ppu21I	YACGTR	1 cut(s)	1088
Psp124BI	GAGCTC	1 cut(s)	1065
Psp6I	CCWGG	1 cut(s)	503
PspEI	GGTNACC	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	6 cut(s)	18, 234, 359, 442, 646, 1133
PspPI	GGNCC	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	1131
PvuI	CGATCG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	1042
RsaNI	GTAC	1 cut(s)	1041
SacI	GAGCTC	1 cut(s)	1065
SalI	GTCGAC	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	149, 986
Sau3AI	GATC	8 cut(s)	276, 313, 338, 365, 715, 770, 940, 1131
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	4 cut(s)	409, 428, 455, 710
ScrFI	CCNGG	2 cut(s)	451, 505
SduI	GDGCHC	2 cut(s)	647, 1065
SfaNI	GCATC	2 cut(s)	739, 1072
SfoI	GGCGCC	2 cut(s)	234, 359
SinI	GGWCC	1 cut(s)	195
Sse9I	AATT	3 cut(s)	250, 529, 664
SsiI	CCGC	8 cut(s)	39, 210, 355, 379, 421, 482, 541, 845
SspDI	GGCGCC	2 cut(s)	232, 357
SspMI	CTAG	2 cut(s)	21, 105
SstI	GAGCTC	1 cut(s)	1065
StyD4I	CCNGG	2 cut(s)	449, 503
StyI	CCWWGG	3 cut(s)	94, 213, 1180
TaaI	ACNGT	2 cut(s)	167, 938
TaiI	ACGT	3 cut(s)	36, 227, 1090
TaqI	TCGA	4 cut(s)	115, 243, 432, 491
TasI	AATT	3 cut(s)	250, 529, 664
TauI	GCSGC	4 cut(s)	358, 382, 424, 544
TfiI	GAWTC	7 cut(s)	510, 558, 582, 603, 624, 783, 1151
Tru1I	TTAA	2 cut(s)	149, 986
Tru9I	TTAA	2 cut(s)	149, 986
TscAI	CASTG	2 cut(s)	170, 943
TseFI	GTSAC	3 cut(s)	550, 616, 637
TseI	GCWGC	6 cut(s)	305, 322, 372, 407, 544, 631
Tsp45I	GTSAC	3 cut(s)	550, 616, 637
TspDTI	ATGAA	3 cut(s)	377, 502, 1024
TspGWI	ACGGA	2 cut(s)	284, 378
TspRI	CASTG	2 cut(s)	170, 943
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	21, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.