Rmu_sc0003927.1_g000012

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003927.1
OG0009751
Physical Location & Seq
Forward (+)
47999 .. 52427
4429 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1032 bp
atgaaaactataatcagggctaagcataaccccatttcaatgcaagagttaaggtctcttttgatcattgctgaagctgaaattgaagaggttgacaagtcaatttccttaccttccagtactgaaatcgtagcacaaggtgataatgtcagagggtctactcatgcaccaactcatgttacagattccaaacacaacgttactgctttgatgcctctaagtagtgttgcccattctattgaatatattgcacagtttatgcctaattcaaggaaggatagcttcataactcacagagccttctgtgatgctctggctgaagaaagtgcaaggctctcagcaagccaattagctattgccaccacacctcaaatctctctcttccctttcccaaaccactctcacttcacaaacccacccccattaccattcaccaccctctctccctgggacccaccccacaaccctaaccctaatatcacccaaaacccacttcaccaccacgtcaagcctgaagaaactcaccaccacttccccctaaacccaactctcttccaagagaccccatcacctcaacacaagactctgataacctctcccttccagcacctccacgtcagcacacagccaacctcaagtgtcgccacgtcagctcacctgtcagccactgcgctgctccaaaaggccgccaccattggcgcctccgccgctgggaagcagcagtctcagtcagctggcttggctgagtttgggacattaggagggttcacgtccggagaactcaccacgtggcagaagactgaccgtctgacgagggacttcctcggtctgacgtccgcggacggcaacggctgtgatcatgggaatgaagctgttaacgtcgtcaacgatatgttaacgtacgccgggggagccgtcgagtttcaacagtatcatcatgaccagcgtctgcgtggccatcacgctctgttgaagccccagggttttgggttcgcggagactactgcctctgacacttggggggattgttga

Protein Analysis

343

Amino Acids

37.27

Weight (kDa)

6.15

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2CH-4th_BIRD-IDD PF22992 90 - 117 1.4e-13 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 698
AccI GTMKAC 1 cut(s) 158
AccII CGCG 2 cut(s) 839, 995
AccIII TCCGGA 1 cut(s) 773
AciI CCGC 6 cut(s) 687, 705, 708, 837, 839, 995
AclI AACGTT 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 955
AcuI CTGAAG 3 cut(s) 93, 339, 534
AcvI CACGTG 1 cut(s) 789
AcyI GRCGYC 2 cut(s) 699, 833
AdeI CACNNNGTG 2 cut(s) 140, 789
AfaI GTAC 2 cut(s) 121, 902
AfiI CCNNNNNNNGG 1 cut(s) 711
AgsI TTSAA 6 cut(s) 39, 86, 242, 270, 926, 973
AhdI GACNNNNNGTC 1 cut(s) 804
AjiI CACGTC 4 cut(s) 505, 616, 648, 771
AjnI CCWGG 2 cut(s) 446, 978
AjuI GAANNNNNNNTTGG 2 cut(s) 477, 509
AluBI AGCT 6 cut(s) 77, 282, 353, 653, 734, 872
AluI AGCT 6 cut(s) 77, 282, 353, 653, 734, 872
Alw26I GTCTC 4 cut(s) 60, 554, 729, 992
AlwNI CAGNNNCTG 2 cut(s) 668, 949
Aor13HI TCCGGA 1 cut(s) 773
AoxI GGCC 2 cut(s) 684, 955
ApeKI GCWGC 2 cut(s) 673, 718
AspLEI GCGC 2 cut(s) 673, 701
AspS9I GGNCC 1 cut(s) 451
AsuC2I CCSGG 1 cut(s) 907
AsuHPI GGTGA 8 cut(s) 152, 424, 472, 488, 515, 561, 647, 775
AvaII GGWCC 1 cut(s) 451
BalI TGGCCA 1 cut(s) 957
BanI GGYRCC 1 cut(s) 698
BbrPI CACGTG 1 cut(s) 789
BbsI GAAGAC 1 cut(s) 803
BbvI GCAGC 2 cut(s) 660, 730
BccI CCATC 2 cut(s) 574, 966
BceAI ACGGC 3 cut(s) 859, 865, 899
BciT130I CCWGG 2 cut(s) 448, 980
BclI TGATCA 2 cut(s) 63, 856
BcnI CCSGG 1 cut(s) 907
BcoDI GTCTC 4 cut(s) 60, 554, 729, 992
BfoI RGCGCY 1 cut(s) 702
BisI GCNGC 4 cut(s) 674, 687, 708, 719
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 4 cut(s) 675, 688, 709, 720
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 3 cut(s) 448, 907, 980
Bme18I GGWCC 1 cut(s) 451
BmeRI GACNNNNNGTC 1 cut(s) 804
BmgBI CACGTC 4 cut(s) 505, 616, 648, 771
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 4 cut(s) 452, 453, 700, 913
BmrFI CCNGG 3 cut(s) 448, 907, 980
BmsI GCATC 2 cut(s) 201, 298
BoxI GACNNNNGTC 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 803
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 619
BpuMI CCSGG 1 cut(s) 907
BsaAI YACGTR 1 cut(s) 789
BsaHI GRCGYC 2 cut(s) 699, 833
BsaI GGTCTC 2 cut(s) 60, 554
BsaJI CCNNGG 7 cut(s) 446, 447, 823, 837, 906, 978, 979
BsaWI WCCGGW 1 cut(s) 773
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 711
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 773
BseBI CCWGG 2 cut(s) 448, 980
BseDI CCNNGG 7 cut(s) 446, 447, 823, 837, 906, 978, 979
BseLI CCNNNNNNNGG 1 cut(s) 711
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 3 cut(s) 351, 735, 740
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 660, 730
BseYI CCCAGC 1 cut(s) 710
Bsh1236I CGCG 2 cut(s) 839, 995
BshFI GGCC 2 cut(s) 686, 957
BshNI GGYRCC 1 cut(s) 698
BsiSI CCGG 2 cut(s) 774, 906
BsiWI CGTACG 1 cut(s) 900
BslFI GGGAC 3 cut(s) 464, 766, 830
BslI CCNNNNNNNGG 1 cut(s) 711
BsmAI GTCTC 4 cut(s) 60, 554, 729, 992
BsmFI GGGAC 3 cut(s) 464, 766, 830
BsnI GGCC 2 cut(s) 686, 957
Bso31I GGTCTC 2 cut(s) 60, 554
Bsp13I TCCGGA 1 cut(s) 773
Bsp143I GATC 2 cut(s) 63, 856
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 6 cut(s) 687, 705, 708, 837, 839, 995
BspANI GGCC 2 cut(s) 686, 957
BspCNI CTCAG 3 cut(s) 350, 736, 739
BspEI TCCGGA 1 cut(s) 773
BspFNI CGCG 2 cut(s) 839, 995
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 4 cut(s) 452, 453, 700, 913
BspT107I GGYRCC 1 cut(s) 698
BspTNI GGTCTC 2 cut(s) 60, 554
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 7 cut(s) 446, 447, 823, 837, 906, 978, 979
BssMI GATC 2 cut(s) 63, 856
BssNI GRCGYC 2 cut(s) 699, 833
Bst2UI CCWGG 2 cut(s) 448, 980
Bst4CI ACNGT 3 cut(s) 255, 806, 930
Bst6I CTCTTC 3 cut(s) 81, 386, 557
BstACI GRCGYC 2 cut(s) 699, 833
BstBAI YACGTR 1 cut(s) 789
BstC8I GCNNGC 2 cut(s) 343, 736
BstDEI CTNAG 5 cut(s) 21, 218, 337, 726, 744
BstDSI CCRYGG 1 cut(s) 837
BstFNI CGCG 2 cut(s) 839, 995
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 2 cut(s) 673, 701
BstKTI GATC 2 cut(s) 66, 859
BstMAI GTCTC 4 cut(s) 60, 554, 729, 992
BstMBI GATC 2 cut(s) 63, 856
BstMWI GCNNNNNNNGC 4 cut(s) 650, 707, 740, 911
BstNI CCWGG 2 cut(s) 448, 980
BstPAI GACNNNNGTC 1 cut(s) 945
BstSCI CCNGG 3 cut(s) 446, 905, 978
BstUI CGCG 2 cut(s) 839, 995
BstV1I GCAGC 2 cut(s) 660, 730
BstV2I GAAGAC 1 cut(s) 803
BstXI CCANNNNNNTGG 1 cut(s) 986
BsuRI GGCC 2 cut(s) 686, 957
BtgI CCRYGG 1 cut(s) 837
BtrI CACGTC 4 cut(s) 505, 616, 648, 771
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 2 cut(s) 343, 736
CaiI CAGNNNCTG 2 cut(s) 668, 949
CciI TCATGA 1 cut(s) 937
CfoI GCGC 2 cut(s) 673, 701
Cfr13I GGNCC 1 cut(s) 451
Cfr42I CCGCGG 1 cut(s) 840
CseI GACGC 1 cut(s) 935
Csp6I GTAC 2 cut(s) 120, 901
CviAII CATG 4 cut(s) 164, 176, 860, 938
CviQI GTAC 2 cut(s) 120, 901
DdeI CTNAG 5 cut(s) 21, 218, 337, 726, 744
DinI GGCGCC 1 cut(s) 700
DpnI GATC 2 cut(s) 65, 858
DpnII GATC 2 cut(s) 63, 856
DraIII CACNNNGTG 2 cut(s) 140, 789
DriI GACNNNNNGTC 1 cut(s) 804
EaeI YGGCCR 1 cut(s) 955
Eam1104I CTCTTC 3 cut(s) 81, 386, 557
Eam1105I GACNNNNNGTC 1 cut(s) 804
EarI CTCTTC 3 cut(s) 81, 386, 557
EciI GGCGGA 1 cut(s) 694
Eco31I GGTCTC 2 cut(s) 60, 554
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 3 cut(s) 93, 339, 534
Eco72I CACGTG 1 cut(s) 789
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 446, 978
EgeI GGCGCC 1 cut(s) 700
EheI GGCGCC 1 cut(s) 700
FaeI CATG 4 cut(s) 167, 179, 863, 941
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 3 cut(s) 464, 766, 830
FatI CATG 4 cut(s) 163, 175, 859, 937
FbaI TGATCA 2 cut(s) 63, 856
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 4 cut(s) 674, 687, 708, 719
Fsp4HI GCNGC 4 cut(s) 674, 687, 708, 719
GlaI GCGC 2 cut(s) 672, 700
GluI GCNGC 4 cut(s) 674, 687, 708, 719
GsaI CCCAGC 1 cut(s) 714
HaeII RGCGCY 1 cut(s) 702
HaeIII GGCC 2 cut(s) 686, 957
HapII CCGG 2 cut(s) 774, 906
HgaI GACGC 1 cut(s) 935
HhaI GCGC 2 cut(s) 673, 701
Hin1I GRCGYC 2 cut(s) 699, 833
Hin1II CATG 4 cut(s) 167, 179, 863, 941
Hin6I GCGC 2 cut(s) 671, 699
HinP1I GCGC 2 cut(s) 671, 699
HincII GTYRAC 4 cut(s) 94, 877, 886, 897
HindII GTYRAC 4 cut(s) 94, 877, 886, 897
HinfI GANTC 2 cut(s) 185, 583
HpaI GTTAAC 2 cut(s) 877, 897
HpaII CCGG 2 cut(s) 774, 906
HphI GGTGA 8 cut(s) 152, 424, 472, 488, 515, 561, 647, 775
Hpy166II GTNNAC 6 cut(s) 94, 159, 768, 877, 886, 897
Hpy188I TCNGA 5 cut(s) 152, 588, 810, 831, 1012
Hpy188III TCNNGA 2 cut(s) 774, 938
Hpy8I GTNNAC 6 cut(s) 94, 159, 768, 877, 886, 897
Hpy99I CGWCG 2 cut(s) 884, 920
HpyAV CCTTC 4 cut(s) 123, 268, 310, 610
HpyCH4III ACNGT 3 cut(s) 255, 806, 930
HpyCH4IV ACGT 9 cut(s) 198, 504, 615, 647, 770, 788, 833, 879, 899
HpyCH4V TGCA 4 cut(s) 43, 167, 251, 329
HpyF10VI GCNNNNNNNGC 4 cut(s) 650, 707, 740, 911
HpyF3I CTNAG 5 cut(s) 21, 218, 337, 726, 744
HpySE526I ACGT 9 cut(s) 198, 504, 615, 647, 770, 788, 833, 879, 899
Hsp92I GRCGYC 2 cut(s) 699, 833
Hsp92II CATG 4 cut(s) 167, 179, 863, 941
HspAI GCGC 2 cut(s) 671, 699
KasI GGCGCC 1 cut(s) 698
KflI GGGWCCC 1 cut(s) 451
Kpn2I TCCGGA 1 cut(s) 773
Ksp22I TGATCA 2 cut(s) 63, 856
KspAI GTTAAC 2 cut(s) 877, 897
KspI CCGCGG 1 cut(s) 840
Kzo9I GATC 2 cut(s) 63, 856
LmnI GCTCC 2 cut(s) 681, 911
Lsp1109I GCAGC 2 cut(s) 660, 730
LweI GCATC 2 cut(s) 201, 298
MaeII ACGT 9 cut(s) 198, 504, 615, 647, 770, 788, 833, 879, 899
MaeIII GTNAC 2 cut(s) 178, 199
MalI GATC 2 cut(s) 65, 858
MboI GATC 2 cut(s) 63, 856
MboII GAAGA 6 cut(s) 98, 332, 373, 527, 544, 808
MlsI TGGCCA 1 cut(s) 957
MluCI AATT 4 cut(s) 81, 102, 265, 347
MluNI TGGCCA 1 cut(s) 957
Mly113I GGCGCC 1 cut(s) 699
MlyI GAGTC 1 cut(s) 577
Mox20I TGGCCA 1 cut(s) 957
MroI TCCGGA 1 cut(s) 773
MscI TGGCCA 1 cut(s) 957
MseI TTAA 3 cut(s) 50, 876, 896
MslI CAYNNNNRTG 2 cut(s) 38, 864
Msp20I TGGCCA 1 cut(s) 957
MspA1I CMGCKG 3 cut(s) 710, 734, 839
MspI CCGG 2 cut(s) 774, 906
MspR9I CCNGG 3 cut(s) 448, 907, 980
MvaI CCWGG 2 cut(s) 448, 980
MvnI CGCG 2 cut(s) 839, 995
MwoI GCNNNNNNNGC 4 cut(s) 650, 707, 740, 911
NarI GGCGCC 1 cut(s) 699
NciI CCSGG 1 cut(s) 907
NdeII GATC 2 cut(s) 63, 856
NlaIII CATG 4 cut(s) 167, 179, 863, 941
NlaIV GGNNCC 4 cut(s) 452, 453, 700, 913
PagI TCATGA 1 cut(s) 937
PasI CCCWGGG 2 cut(s) 447, 979
PcsI WCGNNNNNNNCGW 1 cut(s) 885
PfeI GAWTC 1 cut(s) 185
Pfl23II CGTACG 1 cut(s) 900
PkrI GCNGC 4 cut(s) 675, 688, 709, 720
PleI GAGTC 1 cut(s) 577
PluTI GGCGCC 1 cut(s) 702
PmaCI CACGTG 1 cut(s) 789
PmlI CACGTG 1 cut(s) 789
PpsI GAGTC 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 789
PpuMI RGGWCCY 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 945
Psp1406I AACGTT 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 446, 978
PspCI CACGTG 1 cut(s) 789
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 2 cut(s) 446, 978
PspLI CGTACG 1 cut(s) 900
PspN4I GGNNCC 4 cut(s) 452, 453, 700, 913
PspPI GGNCC 1 cut(s) 451
PspPPI RGGWCCY 1 cut(s) 451
PstNI CAGNNNCTG 2 cut(s) 668, 949
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 2 cut(s) 121, 902
RsaNI GTAC 2 cut(s) 120, 901
RseI CAYNNNNRTG 2 cut(s) 38, 864
SacII CCGCGG 1 cut(s) 840
SaqAI TTAA 3 cut(s) 50, 876, 896
SatI GCNGC 4 cut(s) 674, 687, 708, 719
Sau3AI GATC 2 cut(s) 63, 856
Sau96I GGNCC 1 cut(s) 451
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 3 cut(s) 448, 907, 980
SfaNI GCATC 2 cut(s) 201, 298
SfoI GGCGCC 1 cut(s) 700
Sfr303I CCGCGG 1 cut(s) 840
SgrBI CCGCGG 1 cut(s) 840
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 2 cut(s) 38, 864
SmlI CTYRAG 1 cut(s) 634
SmoI CTYRAG 1 cut(s) 634
Sse9I AATT 4 cut(s) 81, 102, 265, 347
SsiI CCGC 6 cut(s) 687, 705, 708, 837, 839, 995
SspDI GGCGCC 1 cut(s) 698
StyD4I CCNGG 3 cut(s) 446, 905, 978
TaaI ACNGT 3 cut(s) 255, 806, 930
TaiI ACGT 9 cut(s) 201, 507, 618, 650, 773, 791, 836, 882, 902
TaqI TCGA 1 cut(s) 918
TaqII GACCGA 1 cut(s) 815
TasI AATT 4 cut(s) 81, 102, 265, 347
TatI WGTACW 1 cut(s) 119
TauI GCSGC 2 cut(s) 689, 710
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 50, 876, 896
Tru9I TTAA 3 cut(s) 50, 876, 896
TscAI CASTG 1 cut(s) 673
TseI GCWGC 2 cut(s) 673, 718
TspDTI ATGAA 3 cut(s) 17, 274, 882
TspRI CASTG 1 cut(s) 673
VpaK11BI GGWCC 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 950
XmiI GTMKAC 1 cut(s) 158
ZraI GACGTC 1 cut(s) 834
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.