Rmu_sc0004061.1_g000003

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004061.1
OG0015423
Physical Location & Seq
Reverse (-)
10865 .. 11443
579 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
atgccaggctggatgctggcaaagaagctcggccgtgctaaaaaggcatggaagagcttcactggaaaagtacagttgaaactccacgagctcaacatccccaaaaccatcaaaaccaccactaaacgtctcctcgacttgcgctgtttgcgattctttgtcccatccaaactacgcgctctcactaaaacttcctctacattttctcgaaaccaatattacaaccaccactaccaacaccacaacaagtttctccataagaatgctgcgaccatacacatagacgagctctttgcacagtctcccgactctgcgcacaccaagaaccgacatttagatgcgcaagctgaaacaagcagaggcaaagaagggctcaacaaaggaaatattgcaacgagaaacagcaagagtgtttatagcgttgaagatgcatggcaggcagtggttgctaggtcaccacagctacgggtagtggacgaaagggcggaagagtttatttacaagtttaggcaagacatgaagcttcagaaggagaggtccatccttgaatttcaggagatgttggctcgaagtgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

192

Amino Acids

22.35

Weight (kDa)

10.19

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 158 - 190 5e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14380
fragaria_vesca FvH4_4g03670
malus_domestica MD13G1214200.v1.1 MD16G1219200.v1.1
prunus_persica Prupe.1G039600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393211
rosa_laevigata RLG00000009767 RLG00000009771
rosa_multiflora Rmu_sc0004061.1_g000003 Rmu_sc0017178.1_g000001
rosa_roxburghii Rroxscaffold_5G00338220
rosa_rugosa Rorug04G0001900
rosa_samantha Rh4CG049200 Rh4DG043200 Rh4DG043800
rosa_wichuraiana Rw4G003640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 315, 342
AccII CGCG 1 cut(s) 177
AciI CCGC 1 cut(s) 485
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 509
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 3 cut(s) 79, 425, 548
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 7 cut(s) 28, 57, 91, 289, 347, 463, 523
AluI AGCT 7 cut(s) 28, 57, 91, 289, 347, 463, 523
Alw21I GWGCWC 2 cut(s) 93, 291
Alw26I GTCTC 2 cut(s) 134, 306
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 548
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 4 cut(s) 144, 179, 316, 343
AspS9I GGNCC 1 cut(s) 537
AsuHPI GGTGA 1 cut(s) 447
AvaII GGWCC 1 cut(s) 537
BanII GRGCYC 3 cut(s) 93, 291, 375
BauI CACGAG 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 93, 291
BbvI GCAGC 1 cut(s) 253
BccI CCATC 3 cut(s) 116, 172, 548
BceAI ACGGC 1 cut(s) 18
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 134, 306
BfaI CTAG 2 cut(s) 450, 577
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 3 cut(s) 3, 328, 418
Bse1I ACTGG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 6
BseGI GGATG 4 cut(s) 18, 96, 164, 540
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 122
BseX3I CGGCCG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 253
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 93, 291
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 134, 306
BsmBI CGTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 93, 291, 375
BspACI CCGC 1 cut(s) 485
BspANI GGCC 1 cut(s) 33
BspFNI CGCG 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 67
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 75, 300
Bst6I CTCTTC 2 cut(s) 47, 483
BstAPI GCANNNNNTGC 1 cut(s) 446
BstC8I GCNNGC 3 cut(s) 18, 345, 438
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 4 cut(s) 18, 96, 164, 540
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 4 cut(s) 144, 179, 316, 343
BstMAI GTCTC 2 cut(s) 134, 306
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 5 cut(s) 44, 148, 437, 446, 572
BstNI CCWGG 1 cut(s) 6
BstPI GGTNACC 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 253
BstZI CGGCCG 1 cut(s) 31
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 4 cut(s) 18, 96, 164, 540
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 60, 447
Cac8I GCNNGC 3 cut(s) 18, 345, 438
CfoI GCGC 4 cut(s) 144, 179, 316, 343
Cfr13I GGNCC 1 cut(s) 537
Csp6I GTAC 1 cut(s) 71
CviAII CATG 3 cut(s) 48, 432, 517
CviQI GTAC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 31
EagI CGGCCG 1 cut(s) 31
Eam1104I CTCTTC 2 cut(s) 47, 483
EarI CTCTTC 2 cut(s) 47, 483
EciI GGCGGA 1 cut(s) 500
Ecl136II GAGCTC 2 cut(s) 91, 289
EclXI CGGCCG 1 cut(s) 31
Eco24I GRGCYC 3 cut(s) 93, 291, 375
Eco47I GGWCC 1 cut(s) 537
Eco52I CGGCCG 1 cut(s) 31
Eco53kI GAGCTC 2 cut(s) 91, 289
Eco57I CTGAAG 1 cut(s) 509
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 2 cut(s) 91, 289
EcoO65I GGTNACC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 4
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 3 cut(s) 93, 291, 375
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 3 cut(s) 51, 435, 520
FaiI YATR 7 cut(s) 49, 258, 275, 281, 417, 433, 518
FaqI GGGAC 1 cut(s) 146
FatI CATG 3 cut(s) 47, 431, 516
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 4 cut(s) 25, 83, 151, 527
FriOI GRGCYC 3 cut(s) 93, 291, 375
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 450, 577
FspI TGCGCA 2 cut(s) 315, 342
GlaI GCGC 4 cut(s) 143, 178, 315, 342
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 33
HhaI GCGC 4 cut(s) 144, 179, 316, 343
Hin1II CATG 3 cut(s) 51, 435, 520
Hin6I GCGC 4 cut(s) 142, 177, 314, 341
HinP1I GCGC 4 cut(s) 142, 177, 314, 341
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 2 cut(s) 153, 308
HphI GGTGA 1 cut(s) 447
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 1 cut(s) 528
Hpy188III TCNNGA 3 cut(s) 207, 305, 554
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 362, 523
HpyCH4III ACNGT 2 cut(s) 75, 300
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 296, 392, 431
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 148, 437, 446, 572
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 51, 435, 520
HspAI GCGC 4 cut(s) 142, 177, 314, 341
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 2, 18, 48, 422, 539
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 3 cut(s) 3, 328, 418
MaeI CTAG 2 cut(s) 450, 577
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 453
MboII GAAGA 3 cut(s) 64, 437, 500
MhlI GDGCHC 3 cut(s) 93, 291, 375
MluCI AATT 1 cut(s) 548
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 4 cut(s) 143, 205, 353, 528
Mph1103I ATGCAT 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 56
MslI CAYNNNNRTG 2 cut(s) 261, 336
MspR9I CCNGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 5 cut(s) 44, 148, 437, 446, 572
NlaIII CATG 3 cut(s) 51, 435, 520
NmeAIII GCCGAG 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 453
NsbI TGCGCA 2 cut(s) 315, 342
NsiI ATGCAT 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 47
PctI GAATGC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Psp124BI GAGCTC 2 cut(s) 93, 291
Psp6I CCWGG 1 cut(s) 4
PspEI GGTNACC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 4
PspPI GGNCC 1 cut(s) 537
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
RseI CAYNNNNRTG 2 cut(s) 261, 336
SacI GAGCTC 2 cut(s) 93, 291
SapI GCTCTTC 1 cut(s) 47
SatI GCNGC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 537
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 3 cut(s) 93, 291, 375
SfaNI GCATC 3 cut(s) 3, 328, 418
SinI GGWCC 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 261, 336
Sse9I AATT 1 cut(s) 548
SsiI CCGC 1 cut(s) 485
SspI AATATT 2 cut(s) 218, 388
SspMI CTAG 2 cut(s) 450, 577
SstI GAGCTC 2 cut(s) 93, 291
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 2 cut(s) 75, 300
TaiI ACGT 1 cut(s) 130
TaqI TCGA 3 cut(s) 135, 208, 568
TasI AATT 1 cut(s) 548
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 1 cut(s) 153
TscAI CASTG 2 cut(s) 67, 447
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 1 cut(s) 533
TspRI CASTG 2 cut(s) 67, 447
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 2 cut(s) 450, 577
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.