Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004232.1

Orthogroup ID

OG0015298

Physical Location & Seq

Genomic Coordinates Reverse (-)

104294 .. 109640

Gene Structure 5347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggacactttcgctacttgtagtcacaaagactgtagagtagttggctggttctcgaaggatgacgaaccaggtcgccacactggcgaggctaatctgtctgcagatgccaaggctagcttgcggggctcctgccagggcttggattccgatggctggctcggcggttttccagatggtttcggtgattctgccaccgattttgggctcctgagatcaagggcttcaaggtttgcaattgcagagtctctctcttctgatcctacaccaacgcatcataatcttcgtcctccctaccttactcttgggctgcgatcgccgttgggattcaaacaaggattactattgtctctggtagcagaagccataaagattacaatggaatgggcggacaaggctgttggatttctattgtcgtatatcagtttatctatattcacttattataccttttgggtcattattctgccatttgtgaacagtgatcactttatccaccgatattttttaccccaagaatatgccatcttaatccctgtatttgctggcatggtgcttctttgctttctctccatattcattggtacactggacttgctggcagagctccagatagaactgagtgatgcatgtatcatagtgaagtttgttgaagatgtgggtcgcctcgtcgggatccaaccagttttgaatgattccattttggcagtatatcaatgtccttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006464 GO:0006486 GO:0006493 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006720 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016093 GO:0019348 GO:0019538 GO:0019637 GO:0030234 GO:0031501 GO:0031984 GO:0032991 GO:0033185 GO:0034645 GO:0035268 GO:0035269 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0050790 GO:0065007 GO:0065009 GO:0070085 GO:0071704 GO:0090407 GO:0097502 GO:0098772 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00563 ko01100 map00510 map00563 map01100

Pfam Domains

Protein Families

DPM2

Protein Analysis

242

Amino Acids

26.75

Weight (kDa)

5.02

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPM2	PF07297	130 - 196	4.6e-28	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74340 AT1G74340
malus_domestica	MD06G1025500.v1.1 MD16G1280900.v1.1
prunus_persica	Prupe.5G029600_v2.0.a1
pyrus_communis	pycom06g02060 pycom06g02070
rosa_chinensis	RchiOBHm_Chr7g0211611
rosa_laevigata	RLG00000002991
rosa_multiflora	Rmu_sc0003760.1_g000018 Rmu_sc0004232.1_g000020
rosa_roxburghii	Rroxscaffold_3G00247680
rosa_rugosa	Rorug07G0126300
rosa_samantha	Rh7AG258900 Rh7CG276000
rosa_wichuraiana	Rw7G022130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AciI	CCGC	3 cut(s)	124, 165, 389
AclWI	GGATC	3 cut(s)	254, 670, 683
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	3 cut(s)	142, 156, 204
AgsI	TTSAA	4 cut(s)	228, 331, 653, 691
AjnI	CCWGG	2 cut(s)	70, 135
AluBI	AGCT	2 cut(s)	120, 607
AluI	AGCT	2 cut(s)	120, 607
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	2 cut(s)	252, 354
AlwI	GGATC	3 cut(s)	254, 670, 683
ApeKI	GCWGC	1 cut(s)	310
AsiSI	GCGATCGC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	197
AsuNHI	GCTAGC	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	675
BanII	GRGCYC	3 cut(s)	131, 210, 609
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	3 cut(s)	146, 170, 533
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	2 cut(s)	72, 137
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	252, 354
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	2 cut(s)	34, 102
BglI	GCCNNNNNGGC	1 cut(s)	84
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	72, 137
BmiI	GGNNCC	3 cut(s)	130, 209, 677
BmrFI	CCNGG	2 cut(s)	72, 137
BmsI	GCATC	3 cut(s)	97, 283, 616
BmtI	GCTAGC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	111, 136, 722
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 156, 204
Bse1I	ACTGG	3 cut(s)	88, 594, 683
BseBI	CCWGG	2 cut(s)	72, 137
BseDI	CCNNGG	3 cut(s)	111, 136, 722
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	142, 156, 204
BseMII	CTCAG	2 cut(s)	203, 611
BseNI	ACTGG	3 cut(s)	88, 594, 683
BseXI	GCAGC	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	609
BslI	CCNNNNNNNGG	3 cut(s)	142, 156, 204
BsmAI	GTCTC	2 cut(s)	252, 354
Bsp1286I	GDGCHC	3 cut(s)	131, 210, 609
Bsp143I	GATC	5 cut(s)	215, 259, 314, 484, 675
BspACI	CCGC	3 cut(s)	124, 165, 389
BspCNI	CTCAG	2 cut(s)	204, 612
BspLI	GGNNCC	3 cut(s)	130, 209, 677
BspMAI	CTGCAG	1 cut(s)	106
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	3 cut(s)	254, 670, 683
BsrI	ACTGG	3 cut(s)	88, 594, 683
BssECI	CCNNGG	3 cut(s)	111, 136, 722
BssMI	GATC	5 cut(s)	215, 259, 314, 484, 675
BssT1I	CCWWGG	2 cut(s)	111, 722
Bst2UI	CCWGG	2 cut(s)	72, 137
Bst4CI	ACNGT	2 cut(s)	35, 482
Bst6I	CTCTTC	1 cut(s)	259
BstC8I	GCNNGC	5 cut(s)	118, 122, 158, 547, 600
BstDEI	CTNAG	2 cut(s)	212, 620
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	5 cut(s)	218, 262, 317, 487, 678
BstMAI	GTCTC	2 cut(s)	252, 354
BstMBI	GATC	5 cut(s)	215, 259, 314, 484, 675
BstMCI	CGRYCG	1 cut(s)	317
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 126, 162, 316, 395, 604
BstNI	CCWGG	2 cut(s)	72, 137
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	2 cut(s)	70, 135
BstSFI	CTRYAG	2 cut(s)	34, 102
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	3 cut(s)	81, 487, 587
Cac8I	GCNNGC	5 cut(s)	118, 122, 158, 547, 600
CsiI	ACCWGGT	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	585
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	2 cut(s)	550, 630
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	2 cut(s)	212, 620
DpnI	GATC	5 cut(s)	217, 261, 316, 486, 677
DpnII	GATC	5 cut(s)	215, 259, 314, 484, 675
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	2 cut(s)	111, 722
Eco24I	GRGCYC	3 cut(s)	131, 210, 609
Eco53kI	GAGCTC	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	70, 135
EcoT14I	CCWWGG	2 cut(s)	111, 722
EcoT22I	ATGCAT	1 cut(s)	631
EcoT38I	GRGCYC	3 cut(s)	131, 210, 609
ErhI	CCWWGG	2 cut(s)	111, 722
FaeI	CATG	2 cut(s)	553, 633
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	2 cut(s)	549, 629
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	3 cut(s)	131, 210, 609
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	593
Hin1II	CATG	2 cut(s)	553, 633
HinfI	GANTC	5 cut(s)	146, 188, 245, 327, 695
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	478, 587
Hpy188I	TCNGA	2 cut(s)	151, 259
Hpy188III	TCNNGA	5 cut(s)	55, 173, 211, 610, 673
Hpy8I	GTNNAC	2 cut(s)	478, 587
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	35, 482
HpyCH4V	TGCA	4 cut(s)	104, 236, 242, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 126, 162, 316, 395, 604
HpyF3I	CTNAG	2 cut(s)	212, 620
Hsp92II	CATG	2 cut(s)	553, 633
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	5 cut(s)	215, 259, 314, 484, 675
LmnI	GCTCC	3 cut(s)	134, 213, 612
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	3 cut(s)	97, 283, 616
MabI	ACCWGGT	1 cut(s)	70
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	5 cut(s)	217, 261, 316, 486, 677
MboI	GATC	5 cut(s)	215, 259, 314, 484, 675
MboII	GAAGA	3 cut(s)	246, 275, 665
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	3 cut(s)	131, 210, 609
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	382, 703
MnlI	CCTC	3 cut(s)	82, 300, 677
Mph1103I	ATGCAT	1 cut(s)	631
MseI	TTAA	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	72, 137
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	2 cut(s)	72, 137
MwoI	GCNNNNNNNGC	6 cut(s)	84, 126, 162, 316, 395, 604
NdeII	GATC	5 cut(s)	215, 259, 314, 484, 675
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	2 cut(s)	553, 633
NlaIV	GGNNCC	3 cut(s)	130, 209, 677
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	23
NsiI	ATGCAT	1 cut(s)	631
NspI	RCATGY	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	146, 188, 327, 695
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	312
Ple19I	CGATCG	1 cut(s)	317
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	609
Psp6I	CCWGG	2 cut(s)	70, 135
PspGI	CCWGG	2 cut(s)	70, 135
PspN4I	GGNNCC	3 cut(s)	130, 209, 677
PstI	CTGCAG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	675
PvuI	CGATCG	1 cut(s)	317
RgaI	GCGATCGC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	5 cut(s)	215, 259, 314, 484, 675
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	72, 137
SduI	GDGCHC	3 cut(s)	131, 210, 609
SetI	ASST	6 cut(s)	76, 122, 233, 300, 452, 609
SexAI	ACCWGGT	1 cut(s)	70
SfaAI	GCGATCGC	1 cut(s)	317
SfaNI	GCATC	3 cut(s)	97, 283, 616
SfcI	CTRYAG	2 cut(s)	34, 102
SgfI	GCGATCGC	1 cut(s)	317
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	3 cut(s)	124, 165, 389
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	2 cut(s)	70, 135
StyI	CCWWGG	2 cut(s)	111, 722
TaaI	ACNGT	2 cut(s)	35, 482
TaqI	TCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	237
TfiI	GAWTC	4 cut(s)	146, 188, 327, 695
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	3 cut(s)	88, 487, 594
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	568
TspRI	CASTG	3 cut(s)	88, 487, 594
Van91I	CCANNNNNTGG	1 cut(s)	142
XceI	RCATGY	1 cut(s)	633
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.