Rmu_sc0004311.1_g000018

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004311.1
OG0005782
Physical Location & Seq
Reverse (-)
58033 .. 65020
6988 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 4236 bp
atgatgatcaatcggggcctgttcgggtggtccccgccgcacgtacagccgctgactccggtgtctgaggtctccgagccgccggagtcgccgtcgccgtacatggacatgagcggggacacgtcggcgcagccggtcgagcaggaggaggagatggaggagcccgaggagatcgagccgccgcccgccgccgtgccgttttcgaggctgttcacctgcgccgaccgcctcgattgggttttgatgaccgtcggatcgctggcggccgccgcgcacggcacggcgctcgtggtgtacttgcacttttttgctaagattattcatctgctttggatcgataagcgttctggagaaccgccgccggagcagtaccatatgccgccggagcagtaccagaagtttatggatcttgctttaagcattgtttatatcgctgtgggtgtttttgctgctggttggattgaggtctcatgctggattctgactggagaacggcagactgctgtcatcaggtcaagatatgttcaagtattacttaaccaggatatgagtttttttgatacctatgggaacaatggggacatcgtgagccaagttttgagtgatgttctactcattcagtctgctctcagtgaaaaagttggaaattatattcataacatggcgacatttttcagtgggctcattattggattcatcaactgttggcagattgcggctataacattagccactggtccatttattgttgctgctggaggaatatcaaatatatttcttcacaggcttgctgagaatattcaagatgcatatgctgaagcagctagcattgctgaacaggcagtctcttacattgggacattatatgcatttacaaatgaaacattggccaagtattcttatgcaacatcactacaagcaactcttcgatatggtatattgattagtctggtgcaaggactaggacttggatttacatatgggcttgccatttgttcatgtgccttgcaactctgggttggaaggttcctggttactgatggaaaagctcatggtggtgaaattataacagctttatttgctgtaatattaagtggccttgggctgaaccaagcagcaacaaacttctactcatttgatcaaggtcgaattgcggcttatagactgtttgagatgatacaaagatcatcctctaatgtaaatcacgagggaactatcctagtggctgtacaaggaaatattgagttccggaatgtgtatttcagttatccatctcgtccggagattcctattttgagtagtttttacctctctgtacctgctaagaaagctgtggcactcgtgggtagaaatggatctggaaagagcagtatcattcccctcatggagcagttttataatccaacattaggagaagttcttttggatggagaaaatataaaaaacctgaatttggaatggctcagaagccagatagggctagtcacacaagatcccgccttgttaagtttgagtataagagataatattgcttatgggcgggatgcgacaatggatcaaattgaagaagctgctaaaatagcacatgcgcatacatttattacttcgcttgagagatcgtatgaaacacaggtaggaagggcaggattagcactgacagaagagcaaaaaataaaactttcaattgccagggcagtacttctgaatccatcaattcttctgcttgatgaggtcactggtggacttgattttgaagctgaaagaactgttcaagaggctctagatctcctcatgttgggacgttcaactataattatagctcggcggcttagtcttataaggaatgctgattacatagctgtgatggaggaaggtcaactagttgaaacgggtacacatgaagagttaataacccatgatggcctatatgcagagcttctcaggtgtgaagaagctgcaaagcttcccaggagaatgccagtgcggaattacaaggagactacagctttccaaattgaaatggattcttcagcaagtaatagcttccaagaaccatcatcgccaaaaatgatgaaatcaccctcacttcagagggttaccggtatatttcgaatgggtgacgtcaattttaatgcacaggactcaccaaaacctaagagtccaccagtagagaaagtggtggaaaacggtcagcagcccttggatacagcagataaggaaccatcaataaagcggcaggatagttttgaaatgagactaccagagctacccaagattgatgtccagtctgcaaatcaacaaacaacaaatggttcggaccctgaatcccctgtttcaccccttttgacatctgatccgaaaaatgaacgttcccattcacaaacctttagccgccctcatagccattctgatgatgttcccatcaaagtgaagggagcaaagagtacacattataaaaagtcaccatcattttggaggcttgcacagctttcttttgcagagtggctttatgctgtgttaggaagcattggtgctgctatctttggttcctttaatcctcttcttgcttatgttatcgcacttgtagtaacagcatactacaggggtgatgaaggtcgtcacttgaggcaagaagtagacaaatggtgcttgatcattgcttgcatgggtatagtgacagtcgttgccaatttcttgcaacacttctactttggtatcatgggggagaaaatgactgaacgagttcgcagaatgatgttttcagcaatgctccgcaatgaggtgggatggtttgatgaagaggaaaacagtgctgatactttgtccatgcgcttggcaaatgatgctacatttgtgcgagctgcttttagtaatcggctttcaatattcatacaggatagtgctgctatcattgtggctgttttgattgggatgttgctacaatggcgattagcacttgtggctttggcaaccctacctgttctcactatttctgccattgcacagaaattatggcttgctggtttttcaagggggattcaggagatgcacaggaaagcatctttggttctcgaggatgcagttagaaacatttacactgtggtagcattctgtgctggtaacaaggtaatggagctctacagattgcagctaaagaagatctttaagcagagtttctttcatggaatggccattgggtttgcatttggtttttcacagttccttctttttgcctgcaatgctcttctcctctggtacactgcatactccgtgaaacaggagtatatgaatctacctactgctctcaaggagtatatggttttctcttttgcaacattcgcactggtagagcccttcgggttggctccttacatactcaaacgacgtaaatctctcatttcagtatttgaaatcatagatcgagtgccaaagattgagccagatgaaagctccgccatgaaaccacctaatgtttatggaagccttgagttgaaaaatgttgatttctgttatccaacccgcccggaactgttggtgctgagcaatttcagtctcaaagtaaacggggggcaaactgtagctgtggtgggagtttcagggtcgggtaagagcactataatttctttgatcgagagattttatgatccagttgctggtcaagtgatgctggatggtcgagatctgaagctttataatttgagatggttgaggaaccaccttggtcttgttcaacaggagcccattattttctcgacaacaataagggagaatataatatatgcaaggcataatgctagtgaagctgaaatgaaagaggctgcaagaatagcaaatgctcatcatttcatcagcagcttgcctcatggttatgatacacatgtggggatgagaggggttgatctaaccccaggacagaagcaaagaattgcaatcgctcgtgttgttttaaaaaatgctcccattttgttattggacgaagcaagttcgtctattgaatctgagtcaagtcgagtggtgcaggaggcccttgatacattaatcatggggaacaaaacaaccatcttgatagctcacagagctgcgatgatgaggcatgttgacaacattgtagttcttaatggagggagaattgtggaagaagggtcccatgattctttaatgtcaaagaacggtctttatgtccgtttgatgcatcctcactttggcaagggtctgcgtcagcaccgccttgtttag

Protein Analysis

1411

Amino Acids

156.84

Weight (kDa)

6.08

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 87 - 364 1.4e-40 ABC transporter transmembrane region
ABC_tran PF00005 435 - 579 4.9e-22 ABC transporter
ABC_membrane PF00664 843 - 1105 1.2e-39 ABC transporter transmembrane region
ABC_tran PF00005 1180 - 1328 1.9e-28 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 1067, 1398, 1838, 2454, 3693
AarI CACCTGC 1 cut(s) 224
AasI GACNNNNNNGTC 1 cut(s) 61
AatII GACGTC 1 cut(s) 2124
Acc16I TGCGCA 1 cut(s) 1590
Acc36I ACCTGC 2 cut(s) 224, 1327
AccB7I CCANNNNNTGG 1 cut(s) 3653
AccBSI CCGCTC 1 cut(s) 114
AccI GTMKAC 1 cut(s) 2637
AccII CGCG 1 cut(s) 272
AccIII TCCGGA 2 cut(s) 1248, 1279
AclI AACGTT 1 cut(s) 2368
AclWI GGATC 8 cut(s) 262, 341, 414, 1363, 1487, 1563, 2348, 3638
AcoI YGGCCR 3 cut(s) 264, 888, 3189
AcsI RAATTY 1 cut(s) 1450
AcuI CTGAAG 4 cut(s) 837, 2013, 2072, 3704
AcyI GRCGYC 1 cut(s) 2121
AfiI CCNNNNNNNGG 7 cut(s) 235, 1409, 1453, 1795, 2779, 3653, 4202
AflIII ACRYGT 2 cut(s) 120, 3877
AgeI ACCGGT 1 cut(s) 2099
AhlI ACTAGT 1 cut(s) 1879
AjiI CACGTC 1 cut(s) 123
AjnI CCWGG 5 cut(s) 540, 1029, 1688, 1967, 3907
AjuI GAANNNNNNNTTGG 2 cut(s) 3047, 3079
Alw21I GWGCWC 2 cut(s) 3138, 3614
Alw26I GTCTC 6 cut(s) 76, 472, 850, 1991, 2248, 3557
AlwI GGATC 8 cut(s) 262, 341, 414, 1363, 1487, 1563, 2348, 3638
AlwNI CAGNNNCTG 2 cut(s) 52, 3653
Ama87I CYCGRG 2 cut(s) 164, 3071
Aor13HI TCCGGA 2 cut(s) 1248, 1279
AoxI GGCC 7 cut(s) 16, 264, 888, 1096, 1921, 3189, 4023
ApoI RAATTY 1 cut(s) 1450
AseI ATTAAT 1 cut(s) 4037
AsiGI ACCGGT 1 cut(s) 2099
Asp700I GAANNNNTTC 1 cut(s) 2742
AspLEI GCGC 6 cut(s) 130, 221, 274, 286, 1591, 2832
AspS9I GGNCC 6 cut(s) 16, 30, 737, 2317, 4024, 4143
AsuC2I CCSGG 1 cut(s) 3524
AsuHPI GGTGA 8 cut(s) 205, 1070, 2070, 2129, 2136, 2328, 2454, 2618
AsuII TTCGAA 1 cut(s) 2110
AsuNHI GCTAGC 1 cut(s) 824
AvaI CYCGRG 2 cut(s) 164, 3071
AvaII GGWCC 4 cut(s) 30, 737, 2317, 4143
BaeI ACNNNNGTAYC 4 cut(s) 2698, 2731, 3864, 3897
BalI TGGCCA 2 cut(s) 890, 3191
BanII GRGCYC 5 cut(s) 165, 684, 3138, 3354, 3741
BauI CACGAG 4 cut(s) 287, 1205, 1340, 3936
Bbv12I GWGCWC 2 cut(s) 3138, 3614
BceAI ACGGC 7 cut(s) 76, 82, 176, 181, 292, 297, 509
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 5 cut(s) 542, 1031, 1690, 1969, 3909
BciVI GTATCC 1 cut(s) 2197
BclI TGATCA 3 cut(s) 6, 1138, 2652
BcnI CCSGG 1 cut(s) 3524
BcoDI GTCTC 6 cut(s) 76, 472, 850, 1991, 2248, 3557
BcuI ACTAGT 1 cut(s) 1879
BfaI CTAG 7 cut(s) 825, 962, 1220, 1481, 1781, 1880, 3795
BfmI CTRYAG 4 cut(s) 2001, 2599, 3139, 3576
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 2 cut(s) 224, 1327
BfuI GTATCC 1 cut(s) 2197
BglII AGATCT 3 cut(s) 1783, 3159, 3679
BlpI GCTNAGC 1 cut(s) 3539
BmcAI AGTACT 1 cut(s) 1698
Bme1390I CCNGG 6 cut(s) 542, 1031, 1690, 1969, 3524, 3909
Bme18I GGWCC 4 cut(s) 30, 737, 2317, 4143
BmeT110I CYCGRG 2 cut(s) 164, 3071
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 6 cut(s) 16, 30, 737, 2317, 4024, 4143
BmrFI CCNGG 6 cut(s) 542, 1031, 1690, 1969, 3524, 3909
BmsI GCATC 9 cut(s) 796, 1534, 2833, 3036, 3067, 3068, 3654, 4179, 4201
BmtI GCTAGC 1 cut(s) 828
BoxI GACNNNNGTC 1 cut(s) 503
BpmI CTGGAG 3 cut(s) 369, 507, 777
Bpu1102I GCTNAGC 1 cut(s) 3539
Bpu14I TTCGAA 1 cut(s) 2110
BpuEI CTTGAG 4 cut(s) 1631, 2644, 3290, 3506
BpuMI CCSGG 1 cut(s) 3524
Bsa29I ATCGAT 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 2121
BsaI GGTCTC 2 cut(s) 76, 472
BsaJI CCNNGG 7 cut(s) 165, 1099, 1689, 1967, 2199, 3718, 3907
BsaWI WCCGGW 4 cut(s) 58, 1248, 1279, 2099
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 7 cut(s) 235, 1409, 1453, 1795, 2779, 3653, 4202
Bse118I RCCGGY 2 cut(s) 133, 2099
Bse1I ACTGG 8 cut(s) 490, 739, 1741, 1979, 2165, 2284, 3348, 3647
Bse3DI GCAATG 6 cut(s) 828, 2655, 2772, 2782, 2997, 3244
BseAI TCCGGA 2 cut(s) 1248, 1279
BseBI CCWGG 5 cut(s) 542, 1031, 1690, 1969, 3909
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 7 cut(s) 165, 1099, 1689, 1967, 2199, 3718, 3907
BseGI GGATG 9 cut(s) 1187, 1432, 1549, 2792, 2937, 3082, 3676, 3891, 4192
BseLI CCNNNNNNNGG 7 cut(s) 235, 1409, 1453, 1795, 2779, 3653, 4202
BseMI GCAATG 6 cut(s) 828, 2655, 2772, 2782, 2997, 3244
BseMII CTCAG 7 cut(s) 57, 643, 783, 1477, 1954, 3530, 3990
BseNI ACTGG 8 cut(s) 490, 739, 1741, 1979, 2165, 2284, 3348, 3647
BseRI GAGGAG 6 cut(s) 161, 164, 173, 182, 1778, 3239
BseX3I CGGCCG 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 4037
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 3 cut(s) 138, 226, 267
BshFI GGCC 7 cut(s) 18, 266, 890, 1098, 1923, 3191, 4025
BshTI ACCGGT 1 cut(s) 2099
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 3 cut(s) 138, 226, 267
BsiHKAI GWGCWC 2 cut(s) 3138, 3614
BsiHKCI CYCGRG 2 cut(s) 164, 3071
BsiSI CCGG 9 cut(s) 59, 83, 134, 362, 383, 1249, 1280, 2100, 3524
BslFI GGGAC 6 cut(s) 16, 131, 593, 871, 1812, 4129
BslI CCNNNNNNNGG 7 cut(s) 235, 1409, 1453, 1795, 2779, 3653, 4202
BsmAI GTCTC 6 cut(s) 76, 472, 850, 1991, 2248, 3557
BsmFI GGGAC 6 cut(s) 16, 131, 593, 871, 1812, 4129
BsmI GAATGC 3 cut(s) 1849, 1980, 3107
BsnI GGCC 7 cut(s) 18, 266, 890, 1098, 1923, 3191, 4025
Bso31I GGTCTC 2 cut(s) 76, 472
BsoBI CYCGRG 2 cut(s) 164, 3071
Bsp119I TTCGAA 1 cut(s) 2110
Bsp1286I GDGCHC 6 cut(s) 165, 684, 3138, 3354, 3614, 3741
Bsp13I TCCGGA 2 cut(s) 1248, 1279
Bsp1407I TGTACA 1 cut(s) 1228
Bsp1720I GCTNAGC 1 cut(s) 3539
BspANI GGCC 7 cut(s) 18, 266, 890, 1098, 1923, 3191, 4025
BspCNI CTCAG 7 cut(s) 58, 642, 784, 1476, 1953, 3531, 3991
BspDI ATCGAT 1 cut(s) 336
BspEI TCCGGA 2 cut(s) 1248, 1279
BspFNI CGCG 1 cut(s) 272
BspMI ACCTGC 2 cut(s) 224, 1327
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 8 cut(s) 262, 341, 414, 1363, 1487, 1563, 2348, 3638
BspQI GCTCTTC 2 cut(s) 1656, 3249
BspT104I TTCGAA 1 cut(s) 2110
BspTNI GGTCTC 2 cut(s) 76, 472
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 6 cut(s) 828, 2655, 2772, 2782, 2997, 3244
BsrFI RCCGGY 2 cut(s) 133, 2099
BsrGI TGTACA 1 cut(s) 1228
BsrI ACTGG 8 cut(s) 490, 739, 1741, 1979, 2165, 2284, 3348, 3647
BssAI RCCGGY 2 cut(s) 133, 2099
BssECI CCNNGG 7 cut(s) 165, 1099, 1689, 1967, 2199, 3718, 3907
BssNI GRCGYC 1 cut(s) 2121
BssSI CACGAG 4 cut(s) 287, 1205, 1340, 3936
BssT1I CCWWGG 3 cut(s) 1099, 2199, 3718
Bst2BI CACGAG 4 cut(s) 287, 1205, 1340, 3936
Bst2UI CCWGG 5 cut(s) 542, 1031, 1690, 1969, 3909
Bst6I CTCTTC 6 cut(s) 930, 1656, 1896, 2565, 2793, 3249
BstACI GRCGYC 1 cut(s) 2121
BstAPI GCANNNNNTGC 2 cut(s) 2843, 3113
BstAUI TGTACA 1 cut(s) 1228
BstBAI YACGTR 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 2110
BstEII GGTNACC 1 cut(s) 2095
BstF5I GGATG 9 cut(s) 1187, 1432, 1549, 2792, 2937, 3082, 3676, 3891, 4192
BstFNI CGCG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 6 cut(s) 130, 221, 274, 286, 1591, 2832
BstMAI GTCTC 6 cut(s) 76, 472, 850, 1991, 2248, 3557
BstMCI CGRYCG 3 cut(s) 138, 226, 267
BstNI CCWGG 5 cut(s) 542, 1031, 1690, 1969, 3909
BstNSI RCATGY 3 cut(s) 1589, 3881, 4097
BstPAI GACNNNNGTC 1 cut(s) 503
BstPI GGTNACC 1 cut(s) 2095
BstSCI CCNGG 6 cut(s) 540, 1029, 1688, 1967, 3522, 3907
BstSFI CTRYAG 4 cut(s) 2001, 2599, 3139, 3576
BstUI CGCG 1 cut(s) 272
BstX2I RGATCY 6 cut(s) 406, 1355, 1492, 1783, 3159, 3679
BstXI CCANNNNNNTGG 2 cut(s) 2472, 2833
BstYI RGATCY 6 cut(s) 406, 1355, 1492, 1783, 3159, 3679
BstZI CGGCCG 1 cut(s) 264
Bsu15I ATCGAT 1 cut(s) 336
BsuI GTATCC 1 cut(s) 2197
BsuRI GGCC 7 cut(s) 18, 266, 890, 1098, 1923, 3191, 4025
BsuTUI ATCGAT 1 cut(s) 336
BtgZI GCGATG 2 cut(s) 2043, 4097
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 9 cut(s) 1187, 1432, 1549, 2792, 2937, 3082, 3676, 3891, 4192
BtsI GCAGTG 1 cut(s) 3258
BveI ACCTGC 2 cut(s) 224, 1327
CaiI CAGNNNCTG 2 cut(s) 52, 3653
CciNI GCGGCCGC 1 cut(s) 264
CfoI GCGC 6 cut(s) 130, 221, 274, 286, 1591, 2832
Cfr10I RCCGGY 2 cut(s) 133, 2099
Cfr13I GGNCC 6 cut(s) 16, 30, 737, 2317, 4024, 4143
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 1 cut(s) 4205
CspAI ACCGGT 1 cut(s) 2099
CspCI CAANNNNNGTGG 2 cut(s) 3993, 4028
DraI TTTAAA 1 cut(s) 3948
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 3 cut(s) 264, 888, 3189
EagI CGGCCG 1 cut(s) 264
Eam1104I CTCTTC 6 cut(s) 930, 1656, 1896, 2565, 2793, 3249
EarI CTCTTC 6 cut(s) 930, 1656, 1896, 2565, 2793, 3249
EciI GGCGGA 1 cut(s) 3442
Ecl136II GAGCTC 1 cut(s) 3136
EclXI CGGCCG 1 cut(s) 264
Eco130I CCWWGG 3 cut(s) 1099, 2199, 3718
Eco24I GRGCYC 5 cut(s) 165, 684, 3138, 3354, 3741
Eco31I GGTCTC 2 cut(s) 76, 472
Eco47I GGWCC 4 cut(s) 30, 737, 2317, 4143
Eco52I CGGCCG 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 3136
Eco57I CTGAAG 4 cut(s) 837, 2013, 2072, 3704
Eco88I CYCGRG 2 cut(s) 164, 3071
Eco91I GGTNACC 1 cut(s) 2095
EcoICRI GAGCTC 1 cut(s) 3136
EcoO109I RGGNCCY 3 cut(s) 16, 4024, 4143
EcoO65I GGTNACC 1 cut(s) 2095
EcoRII CCWGG 5 cut(s) 540, 1029, 1688, 1967, 3907
EcoT14I CCWWGG 3 cut(s) 1099, 2199, 3718
EcoT22I ATGCAT 3 cut(s) 811, 871, 4194
EcoT38I GRGCYC 5 cut(s) 165, 684, 3138, 3354, 3741
ErhI CCWWGG 3 cut(s) 1099, 2199, 3718
FalI AAGNNNNNCTT 6 cut(s) 519, 551, 909, 941, 3146, 3178
FaqI GGGAC 6 cut(s) 16, 131, 593, 871, 1812, 4129
FauI CCCGC 6 cut(s) 42, 107, 193, 1504, 1533, 3527
FauNDI CATATG 3 cut(s) 375, 811, 979
FbaI TGATCA 3 cut(s) 6, 1138, 2652
FblI GTMKAC 1 cut(s) 2637
FokI GGATG 9 cut(s) 1174, 1439, 1556, 2799, 2944, 3089, 3683, 3898, 4179
FriOI GRGCYC 5 cut(s) 165, 684, 3138, 3354, 3741
FspAI RTGCGCAY 1 cut(s) 1590
FspBI CTAG 7 cut(s) 825, 962, 1220, 1481, 1781, 1880, 3795
FspI TGCGCA 1 cut(s) 1590
GlaI GCGC 6 cut(s) 129, 220, 273, 285, 1590, 2831
GsuI CTGGAG 3 cut(s) 369, 507, 777
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 7 cut(s) 18, 266, 890, 1098, 1923, 3191, 4025
HapII CCGG 9 cut(s) 59, 83, 134, 362, 383, 1249, 1280, 2100, 3524
HgaI GACGC 1 cut(s) 4205
HhaI GCGC 6 cut(s) 130, 221, 274, 286, 1591, 2832
Hin1I GRCGYC 1 cut(s) 2121
Hin6I GCGC 6 cut(s) 128, 219, 272, 284, 1589, 2830
HinP1I GCGC 6 cut(s) 128, 219, 272, 284, 1589, 2830
HincII GTYRAC 2 cut(s) 1877, 4099
HindII GTYRAC 2 cut(s) 1877, 4099
HindIII AAGCTT 2 cut(s) 1961, 3686
HpaII CCGG 9 cut(s) 59, 83, 134, 362, 383, 1249, 1280, 2100, 3524
HphI GGTGA 8 cut(s) 205, 1070, 2070, 2129, 2136, 2328, 2454, 2618
Hpy99I CGWCG 4 cut(s) 97, 127, 254, 3387
HpyAV CCTTC 8 cut(s) 1017, 1632, 1865, 2425, 2606, 3233, 3364, 4133
HpyCH4IV ACGT 6 cut(s) 42, 122, 1801, 2121, 2368, 3385
HpySE526I ACGT 6 cut(s) 42, 122, 1801, 2121, 2368, 3385
Hsp92I GRCGYC 1 cut(s) 2121
HspAI GCGC 6 cut(s) 128, 219, 272, 284, 1589, 2830
KflI GGGWCCC 1 cut(s) 4143
Kpn2I TCCGGA 2 cut(s) 1248, 1279
Ksp22I TGATCA 3 cut(s) 6, 1138, 2652
LguI GCTCTTC 2 cut(s) 1656, 3249
LweI GCATC 9 cut(s) 796, 1534, 2833, 3036, 3067, 3068, 3654, 4179, 4201
MaeI CTAG 7 cut(s) 825, 962, 1220, 1481, 1781, 1880, 3795
MaeII ACGT 6 cut(s) 42, 122, 1801, 2121, 2368, 3385
MbiI CCGCTC 1 cut(s) 114
MfeI CAATTG 1 cut(s) 1683
MflI RGATCY 6 cut(s) 406, 1355, 1492, 1783, 3159, 3679
MhlI GDGCHC 6 cut(s) 165, 684, 3138, 3354, 3614, 3741
MlsI TGGCCA 2 cut(s) 890, 3191
MluNI TGGCCA 2 cut(s) 890, 3191
MlyI GAGTC 5 cut(s) 49, 95, 2135, 2167, 4010
MmeI TCCRAC 6 cut(s) 232, 437, 622, 1000, 1427, 3539
Mox20I TGGCCA 2 cut(s) 890, 3191
Mph1103I ATGCAT 3 cut(s) 811, 871, 4194
MroI TCCGGA 2 cut(s) 1248, 1279
MroXI GAANNNNTTC 1 cut(s) 2742
MscI TGGCCA 2 cut(s) 890, 3191
MslI CAYNNNNRTG 6 cut(s) 107, 1056, 1859, 2409, 2426, 3867
Msp20I TGGCCA 2 cut(s) 890, 3191
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 9 cut(s) 59, 83, 134, 362, 383, 1249, 1280, 2100, 3524
MspR9I CCNGG 6 cut(s) 542, 1031, 1690, 1969, 3524, 3909
MunI CAATTG 1 cut(s) 1683
Mva1269I GAATGC 3 cut(s) 1849, 1980, 3107
MvaI CCWGG 5 cut(s) 542, 1031, 1690, 1969, 3909
MvnI CGCG 1 cut(s) 272
NciI CCSGG 1 cut(s) 3524
NdeI CATATG 3 cut(s) 375, 811, 979
NheI GCTAGC 1 cut(s) 824
NmeAIII GCCGAG 1 cut(s) 1801
NmuCI GTSAC 6 cut(s) 1483, 1732, 2117, 2460, 2618, 2674
NotI GCGGCCGC 1 cut(s) 264
NsbI TGCGCA 1 cut(s) 1590
NsiI ATGCAT 3 cut(s) 811, 871, 4194
NspI RCATGY 3 cut(s) 1589, 3881, 4097
NspV TTCGAA 1 cut(s) 2110
PaeR7I CTCGAG 1 cut(s) 3071
PaqCI CACCTGC 1 cut(s) 224
PciI ACATGT 1 cut(s) 3877
PciSI GCTCTTC 2 cut(s) 1656, 3249
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 3 cut(s) 1849, 1980, 3107
PdmI GAANNNNTTC 1 cut(s) 2742
PflMI CCANNNNNTGG 1 cut(s) 3653
PinAI ACCGGT 1 cut(s) 2099
PleI GAGTC 5 cut(s) 49, 94, 2135, 2166, 4009
PpsI GAGTC 5 cut(s) 49, 94, 2135, 2166, 4009
Ppu21I YACGTR 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 4143
PscI ACATGT 1 cut(s) 3877
PshAI GACNNNNGTC 1 cut(s) 503
PshBI ATTAAT 1 cut(s) 4037
PsiI TTATAA 5 cut(s) 1067, 1398, 1838, 2454, 3693
Psp124BI GAGCTC 1 cut(s) 3138
Psp1406I AACGTT 1 cut(s) 2368
Psp5II RGGWCCY 1 cut(s) 4143
Psp6I CCWGG 5 cut(s) 540, 1029, 1688, 1967, 3907
PspEI GGTNACC 1 cut(s) 2095
PspGI CCWGG 5 cut(s) 540, 1029, 1688, 1967, 3907
PspPI GGNCC 6 cut(s) 16, 30, 737, 2317, 4024, 4143
PspPPI RGGWCCY 1 cut(s) 4143
PstNI CAGNNNCTG 2 cut(s) 52, 3653
PsuI RGATCY 6 cut(s) 406, 1355, 1492, 1783, 3159, 3679
RseI CAYNNNNRTG 6 cut(s) 107, 1056, 1859, 2409, 2426, 3867
SacI GAGCTC 1 cut(s) 3138
SapI GCTCTTC 2 cut(s) 1656, 3249
Sau96I GGNCC 6 cut(s) 16, 30, 737, 2317, 4024, 4143
ScaI AGTACT 1 cut(s) 1698
SchI GAGTC 5 cut(s) 49, 95, 2135, 2167, 4010
ScrFI CCNGG 6 cut(s) 542, 1031, 1690, 1969, 3524, 3909
SduI GDGCHC 6 cut(s) 165, 684, 3138, 3354, 3614, 3741
SfaNI GCATC 9 cut(s) 796, 1534, 2833, 3036, 3067, 3068, 3654, 4179, 4201
SfcI CTRYAG 4 cut(s) 2001, 2599, 3139, 3576
Sfr274I CTCGAG 1 cut(s) 3071
SfuI TTCGAA 1 cut(s) 2110
SinI GGWCC 4 cut(s) 30, 737, 2317, 4143
SlaI CTCGAG 1 cut(s) 3071
SmiMI CAYNNNNRTG 6 cut(s) 107, 1056, 1859, 2409, 2426, 3867
SmlI CTYRAG 5 cut(s) 1610, 2623, 3071, 3305, 3485
SmoI CTYRAG 5 cut(s) 1610, 2623, 3071, 3305, 3485
SpeI ACTAGT 1 cut(s) 1879
SspI AATATT 5 cut(s) 799, 1089, 1240, 1528, 2886
SspMI CTAG 7 cut(s) 825, 962, 1220, 1481, 1781, 1880, 3795
SstI GAGCTC 1 cut(s) 3138
StyD4I CCNGG 6 cut(s) 540, 1029, 1688, 1967, 3522, 3907
StyI CCWWGG 3 cut(s) 1099, 2199, 3718
TaiI ACGT 6 cut(s) 45, 125, 1804, 2124, 2371, 3388
TatI WGTACW 4 cut(s) 294, 1228, 1696, 2444
TseFI GTSAC 6 cut(s) 1483, 1732, 2117, 2460, 2618, 2674
Tsp45I GTSAC 6 cut(s) 1483, 1732, 2117, 2460, 2618, 2674
TspGWI ACGGA 2 cut(s) 3259, 4172
Van91I CCANNNNNTGG 1 cut(s) 3653
VpaK11BI GGWCC 4 cut(s) 30, 737, 2317, 4143
VspI ATTAAT 1 cut(s) 4037
XapI RAATTY 1 cut(s) 1450
XbaI TCTAGA 1 cut(s) 1780
XceI RCATGY 3 cut(s) 1589, 3881, 4097
XcmI CCANNNNNNNNNTGG 1 cut(s) 3967
XhoI CTCGAG 1 cut(s) 3071
XmiI GTMKAC 1 cut(s) 2637
XmnI GAANNNNTTC 1 cut(s) 2742
XspI CTAG 7 cut(s) 825, 962, 1220, 1481, 1781, 1880, 3795
ZraI GACGTC 1 cut(s) 2122
ZrmI AGTACT 1 cut(s) 1698
Zsp2I ATGCAT 3 cut(s) 811, 871, 4194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.