Rmu_sc0004339.1_g000034

Prolyl oligopeptidase, N-terminal beta-propeller domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004339.1
OG0014498
Physical Location & Seq
Reverse (-)
131524 .. 135393
3870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004339.1_g000034.1.cds

Sequence Viewer

Length: 1917 bp
atgcaagaggaggatctggaaaggaggaagttttgcttgactggaatgaaattgccaagaaatatggaaagcttctttctttctttctcatgttatgtgcatgttggtacgtgtcgaatttcaccagaccaccatttcctagcctacacacttgatatcaagggtgatgagcagttcattcttcaaattaaggacctaagacgtggatgtatcattcccaaagtacatgttaatggtgttgttagcttggcatgggctcaggatagcagtactctgttttatacactatcagatgagaatcaacgaccttacagggttgtctgctcaaaactaggatctgatgatatggaaaatatcactgtgtttacagaaagtgattccagcttctgtgtggacataacaagcacaaaagatggcaagtttataactgtttatttgatagattctgccaacccattagacagattgcagaaagtgtggaagcgtgttcctggtgtacagtattttctggaacatcatcatggaatattttatgttcttactaatgctcctttgcgagaaagcaaggagtggtcaggtgaaggttattacctagctagatgccgtgttgaagatatactgtcatctaattggcagaatatcatcattccaagtgaagacttcagcattcaagacatggacatgtttgatgggcatctggtcctttttctcaacaagaaggattactccgtcttttgttccattgatttgcctatggctgttcattgtaagcatcaagtgaagattgaagatcttgatccctggtttttccctctgccctcaaattcatgtagcgttgctccaggttcaaaccatgacttccagaattcagcataccgtgtggtgctttcttctcctgtgatgcctgatgtagttgttgactatgacatgtcaacacggagattctcagttgtgcagcaagaagaagtgatgggcttttgtgattcaagctcaccagccaatgagatagatatgaaccaaactcttgttaaacaaaatgagaaggataaaaatgtccagataagtgaatcacaaagatggaaagacttttctggtgaatactgctgtgagaggagggaagtcatttcccatgatggtgttaaagttcctttgaccctactgtactctcatacggcctggaaaaagggtcagtctcctgggcttctacacggatatggagcatatggggaggttttagataaaagctggtgcactgatcggctgagtttacttgaccggggatgggtggtggcatttgctgatgtgaggggtagtggtggagattcttcgtggcataaagctggaagtcagtttaataaactgaattcgatatacgattttgtatcatgtggcaactacctgattaaagagggttatgtacatagcgatcagcttggtgctattggacatagtgctggaggtctacttgttggagcaactatcaataagtacccagatctatttcgtgctgctattttgaaggttccatttcttgacgtatgcaacactctaatggatcccagcttgcccctcacgattctggattatgaagaatttggcaatcctcagataaagtcccaatttgagcatatcttgagttattcaccttgtgataatatctctcaaggcagttgttacccttcaatgcttgttacagcgtcctttcatgactcaagggttgggttttgggaagctgccaagtgggtggccaaagttcgagatagcacatgtcctcgttgttcttgttctgttattctgaagacaaatatgaccggaggacattttggcgaaggtggacgctatgctcaaagtgaggaaactgcgtatgattatgctttcctttttaaagctatggcgatgctgaagaatgaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S9 Peptidase_S9_N

Protein Analysis

638

Amino Acids

72.21

Weight (kDa)

5.57

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69020 AT1G69020
fragaria_vesca FvH4_4g29260
malus_domestica MD13G1056200.v1.1
prunus_persica Prupe.1G293900_v2.0.a1
pyrus_communis pycom13g05020
rosa_chinensis RchiOBHm_Chr4g0437311
rosa_laevigata RLG00000006447
rosa_multiflora Rmu_co8522681.1_g000001 Rmu_sc0004339.1_g000034
rosa_roxburghii Rroxscaffold_5G00378460
rosa_rugosa Rorug04G0299500
rosa_samantha Rh4AG354500 Rh4BG364300 Rh4CG378600 Rh4DG358200
rosa_wichuraiana Rw4G031080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AccI GTMKAC 1 cut(s) 1462
AclWI GGATC 5 cut(s) 21, 343, 791, 1550, 1563
AcoI YGGCCR 1 cut(s) 1746
AcsI RAATTY 5 cut(s) 117, 823, 865, 1363, 1592
AcuI CTGAAG 2 cut(s) 646, 1817
AdeI CACNNNGTG 1 cut(s) 1649
AfaI GTAC 7 cut(s) 109, 225, 271, 498, 1163, 1419, 1490
AfiI CCNNNNNNNGG 1 cut(s) 1282
AflIII ACRYGT 5 cut(s) 110, 226, 681, 927, 1766
AgsI TTSAA 8 cut(s) 185, 611, 671, 788, 849, 987, 1519, 1683
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 5 cut(s) 490, 800, 841, 1175, 1195
Alw21I GWGCWC 1 cut(s) 1253
Alw26I GTCTC 1 cut(s) 1197
Alw44I GTGCAC 1 cut(s) 1249
AlwI GGATC 5 cut(s) 21, 343, 791, 1550, 1563
AlwNI CAGNNNCTG 1 cut(s) 387
AoxI GGCC 2 cut(s) 1173, 1746
ApaLI GTGCAC 1 cut(s) 1249
ApeKI GCWGC 3 cut(s) 955, 1508, 1733
ApoI RAATTY 5 cut(s) 117, 823, 865, 1363, 1592
AspS9I GGNCC 2 cut(s) 193, 700
AsuC2I CCSGG 1 cut(s) 1277
AsuHPI GGTGA 6 cut(s) 114, 176, 590, 984, 1106, 1635
AvaII GGWCC 2 cut(s) 193, 700
BaeGI GKGCMC 1 cut(s) 1253
BalI TGGCCA 1 cut(s) 1748
BamHI GGATCC 1 cut(s) 1555
BanII GRGCYC 1 cut(s) 259
BbsI GAAGAC 2 cut(s) 663, 1805
Bbv12I GWGCWC 1 cut(s) 1253
BbvI GCAGC 3 cut(s) 967, 1495, 1720
BccI CCATC 6 cut(s) 407, 683, 964, 1071, 1127, 1275
BceAI ACGGC 2 cut(s) 588, 1188
BciT130I CCWGG 5 cut(s) 492, 802, 843, 1177, 1197
BcnI CCSGG 1 cut(s) 1277
BcoDI GTCTC 1 cut(s) 1197
BfaI CTAG 4 cut(s) 140, 332, 593, 597
BglII AGATCT 2 cut(s) 790, 1495
BisI GCNGC 3 cut(s) 956, 1509, 1734
BlsI GCNGC 3 cut(s) 957, 1510, 1735
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 6 cut(s) 492, 802, 843, 1177, 1197, 1277
Bme18I GGWCC 2 cut(s) 193, 700
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 193, 700
BmiI GGNNCC 2 cut(s) 1524, 1557
BmrFI CCNGG 6 cut(s) 492, 802, 843, 1177, 1197, 1277
BmsI GCATC 5 cut(s) 590, 703, 781, 891, 1887
BpiI GAAGAC 2 cut(s) 663, 1805
BpmI CTGGAG 2 cut(s) 825, 1476
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 3 cut(s) 1647, 1654, 1696
BpuMI CCSGG 1 cut(s) 1277
BsaAI YACGTR 1 cut(s) 111
BsaBI GATNNNNATC 3 cut(s) 297, 693, 795
BsaJI CCNNGG 3 cut(s) 800, 1196, 1276
BsaWI WCCGGW 1 cut(s) 1811
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 1 cut(s) 1282
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 3 cut(s) 297, 693, 795
BseBI CCWGG 5 cut(s) 492, 802, 843, 1177, 1197
BseDI CCNNGG 3 cut(s) 800, 1196, 1276
BseGI GGATG 2 cut(s) 212, 1286
BseJI GATNNNNATC 3 cut(s) 297, 693, 795
BseLI CCNNNNNNNGG 1 cut(s) 1282
BseMII CTCAG 4 cut(s) 272, 960, 1253, 1619
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 2 cut(s) 23, 1126
BseSI GKGCMC 1 cut(s) 1253
BseXI GCAGC 3 cut(s) 967, 1495, 1720
BseYI CCCAGC 1 cut(s) 1559
BsgI GTGCAG 1 cut(s) 974
BshFI GGCC 2 cut(s) 1175, 1748
BsiHKAI GWGCWC 1 cut(s) 1253
BsiSI CCGG 2 cut(s) 1276, 1812
BslFI GGGAC 1 cut(s) 1600
BslI CCNNNNNNNGG 1 cut(s) 1282
BsmAI GTCTC 1 cut(s) 1197
BsmFI GGGAC 1 cut(s) 1600
BsmI GAATGC 1 cut(s) 666
BsnI GGCC 2 cut(s) 1175, 1748
Bsp1286I GDGCHC 2 cut(s) 259, 1253
Bsp1407I TGTACA 2 cut(s) 496, 1417
Bsp143I GATC 8 cut(s) 13, 335, 790, 796, 1255, 1426, 1495, 1555
BspANI GGCC 2 cut(s) 1175, 1748
BspCNI CTCAG 4 cut(s) 271, 959, 1254, 1618
BspHI TCATGA 1 cut(s) 1705
BspLI GGNNCC 2 cut(s) 1524, 1557
BspPI GGATC 5 cut(s) 21, 343, 791, 1550, 1563
BsrGI TGTACA 2 cut(s) 496, 1417
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 3 cut(s) 800, 1196, 1276
BssMI GATC 8 cut(s) 13, 335, 790, 796, 1255, 1426, 1495, 1555
Bst2UI CCWGG 5 cut(s) 492, 802, 843, 1177, 1197
Bst4CI ACNGT 6 cut(s) 361, 430, 501, 621, 878, 1161
BstAUI TGTACA 2 cut(s) 496, 1417
BstBAI YACGTR 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 1565
BstDEI CTNAG 5 cut(s) 197, 258, 946, 1262, 1605
BstF5I GGATG 2 cut(s) 212, 1286
BstKTI GATC 8 cut(s) 16, 338, 793, 799, 1258, 1429, 1498, 1558
BstMAI GTCTC 1 cut(s) 1197
BstMBI GATC 8 cut(s) 13, 335, 790, 796, 1255, 1426, 1495, 1555
BstNI CCWGG 5 cut(s) 492, 802, 843, 1177, 1197
BstNSI RCATGY 5 cut(s) 104, 230, 685, 931, 1770
BstSCI CCNGG 6 cut(s) 490, 800, 841, 1175, 1195, 1275
BstSLI GKGCMC 1 cut(s) 1253
BstV1I GCAGC 3 cut(s) 967, 1495, 1720
BstV2I GAAGAC 2 cut(s) 663, 1805
BstX2I RGATCY 5 cut(s) 13, 335, 790, 1495, 1555
BstXI CCANNNNNNTGG 1 cut(s) 1744
BstYI RGATCY 5 cut(s) 13, 335, 790, 1495, 1555
BsuRI GGCC 2 cut(s) 1175, 1748
BtgZI GCGATG 1 cut(s) 1910
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 212, 1286
BtsIMutI CAGTG 2 cut(s) 357, 1251
Cac8I GCNNGC 1 cut(s) 1565
CaiI CAGNNNCTG 1 cut(s) 387
CciI TCATGA 1 cut(s) 1705
Cfr13I GGNCC 2 cut(s) 193, 700
CseI GACGC 2 cut(s) 1686, 1845
Csp6I GTAC 7 cut(s) 108, 224, 270, 497, 1162, 1418, 1489
CviQI GTAC 7 cut(s) 108, 224, 270, 497, 1162, 1418, 1489
DdeI CTNAG 5 cut(s) 197, 258, 946, 1262, 1605
DpnI GATC 8 cut(s) 15, 337, 792, 798, 1257, 1428, 1497, 1557
DpnII GATC 8 cut(s) 13, 335, 790, 796, 1255, 1426, 1495, 1555
DraI TTTAAA 1 cut(s) 1885
DraIII CACNNNGTG 1 cut(s) 1649
EaeI YGGCCR 1 cut(s) 1746
Eco24I GRGCYC 1 cut(s) 259
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 193, 700
Eco57I CTGAAG 2 cut(s) 646, 1817
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 865, 1363
EcoRII CCWGG 5 cut(s) 490, 800, 841, 1175, 1195
EcoRV GATATC 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 259
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 1600
FauNDI CATATG 1 cut(s) 1222
FblI GTMKAC 1 cut(s) 1462
Fnu4HI GCNGC 3 cut(s) 956, 1509, 1734
FokI GGATG 2 cut(s) 219, 1293
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 956, 1509, 1734
FspBI CTAG 4 cut(s) 140, 332, 593, 597
GluI GCNGC 3 cut(s) 956, 1509, 1734
GsaI CCCAGC 1 cut(s) 1563
GsuI CTGGAG 2 cut(s) 825, 1476
HaeIII GGCC 2 cut(s) 1175, 1748
HapII CCGG 2 cut(s) 1276, 1812
HgaI GACGC 2 cut(s) 1686, 1845
HincII GTYRAC 2 cut(s) 919, 933
HindII GTYRAC 2 cut(s) 919, 933
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 9 cut(s) 298, 377, 443, 942, 983, 1067, 1322, 1576, 1709
HpaII CCGG 2 cut(s) 1276, 1812
HphI GGTGA 6 cut(s) 114, 176, 590, 984, 1106, 1635
Hpy166II GTNNAC 9 cut(s) 366, 394, 497, 919, 933, 1251, 1268, 1463, 1835
Hpy188I TCNGA 4 cut(s) 292, 340, 1608, 1797
Hpy8I GTNNAC 9 cut(s) 366, 394, 497, 919, 933, 1251, 1268, 1463, 1835
HpyAV CCTTC 6 cut(s) 575, 712, 1036, 1513, 1689, 1823
HpyCH4III ACNGT 6 cut(s) 361, 430, 501, 621, 878, 1161
HpyCH4IV ACGT 3 cut(s) 110, 202, 1536
HpyCH4V TGCA 6 cut(s) 4, 100, 469, 955, 1251, 1542
HpyF3I CTNAG 5 cut(s) 197, 258, 946, 1262, 1605
HpySE526I ACGT 3 cut(s) 110, 202, 1536
Kzo9I GATC 8 cut(s) 13, 335, 790, 796, 1255, 1426, 1495, 1555
LmnI GCTCC 4 cut(s) 553, 844, 1217, 1472
Lsp1109I GCAGC 3 cut(s) 967, 1495, 1720
LweI GCATC 5 cut(s) 590, 703, 781, 891, 1887
MaeI CTAG 4 cut(s) 140, 332, 593, 597
MaeII ACGT 3 cut(s) 110, 202, 1536
MaeIII GTNAC 2 cut(s) 1673, 1690
MalI GATC 8 cut(s) 15, 337, 792, 798, 1257, 1428, 1497, 1557
MboI GATC 8 cut(s) 13, 335, 790, 796, 1255, 1426, 1495, 1555
MflI RGATCY 5 cut(s) 13, 335, 790, 1495, 1555
MhlI GDGCHC 2 cut(s) 259, 1253
MlsI TGGCCA 1 cut(s) 1748
MluCI AATT 9 cut(s) 50, 117, 186, 628, 823, 865, 1363, 1592, 1619
MluNI TGGCCA 1 cut(s) 1748
MlyI GAGTC 1 cut(s) 1703
MmeI TCCRAC 1 cut(s) 1450
Mox20I TGGCCA 1 cut(s) 1748
MscI TGGCCA 1 cut(s) 1748
MseI TTAA 7 cut(s) 189, 231, 1029, 1140, 1353, 1404, 1884
MslI CAYNNNNRTG 7 cut(s) 231, 519, 680, 1075, 1134, 1212, 1550
Msp20I TGGCCA 1 cut(s) 1748
MspI CCGG 2 cut(s) 1276, 1812
MspR9I CCNGG 6 cut(s) 492, 802, 843, 1177, 1197, 1277
Mva1269I GAATGC 1 cut(s) 666
MvaI CCWGG 5 cut(s) 492, 802, 843, 1177, 1197
NciI CCSGG 1 cut(s) 1277
NdeI CATATG 1 cut(s) 1222
NdeII GATC 8 cut(s) 13, 335, 790, 796, 1255, 1426, 1495, 1555
NlaIV GGNNCC 2 cut(s) 1524, 1557
NspI RCATGY 5 cut(s) 104, 230, 685, 931, 1770
PagI TCATGA 1 cut(s) 1705
PciI ACATGT 4 cut(s) 226, 681, 927, 1766
PctI GAATGC 1 cut(s) 666
PfeI GAWTC 8 cut(s) 298, 377, 443, 942, 983, 1067, 1322, 1576
PkrI GCNGC 3 cut(s) 957, 1510, 1735
PleI GAGTC 1 cut(s) 1703
PpsI GAGTC 1 cut(s) 1703
Ppu21I YACGTR 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 4 cut(s) 226, 681, 927, 1766
PsiI TTATAA 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 5 cut(s) 490, 800, 841, 1175, 1195
PspFI CCCAGC 1 cut(s) 1559
PspGI CCWGG 5 cut(s) 490, 800, 841, 1175, 1195
PspN4I GGNNCC 2 cut(s) 1524, 1557
PspPI GGNCC 2 cut(s) 193, 700
PspPPI RGGWCCY 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 387
PsuI RGATCY 5 cut(s) 13, 335, 790, 1495, 1555
RsaI GTAC 7 cut(s) 109, 225, 271, 498, 1163, 1419, 1490
RsaNI GTAC 7 cut(s) 108, 224, 270, 497, 1162, 1418, 1489
RseI CAYNNNNRTG 7 cut(s) 231, 519, 680, 1075, 1134, 1212, 1550
SaqAI TTAA 7 cut(s) 189, 231, 1029, 1140, 1353, 1404, 1884
SatI GCNGC 3 cut(s) 956, 1509, 1734
Sau3AI GATC 8 cut(s) 13, 335, 790, 796, 1255, 1426, 1495, 1555
Sau96I GGNCC 2 cut(s) 193, 700
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 1703
ScrFI CCNGG 6 cut(s) 492, 802, 843, 1177, 1197, 1277
SduI GDGCHC 2 cut(s) 259, 1253
SfaNI GCATC 5 cut(s) 590, 703, 781, 891, 1887
SinI GGWCC 2 cut(s) 193, 700
SmiMI CAYNNNNRTG 7 cut(s) 231, 519, 680, 1075, 1134, 1212, 1550
SmlI CTYRAG 3 cut(s) 1633, 1662, 1711
SmoI CTYRAG 3 cut(s) 1633, 1662, 1711
Sse9I AATT 9 cut(s) 50, 117, 186, 628, 823, 865, 1363, 1592, 1619
SspI AATATT 1 cut(s) 528
SspMI CTAG 4 cut(s) 140, 332, 593, 597
StyD4I CCNGG 6 cut(s) 490, 800, 841, 1175, 1195, 1275
TaaI ACNGT 6 cut(s) 361, 430, 501, 621, 878, 1161
TaiI ACGT 3 cut(s) 113, 205, 1539
TaqI TCGA 3 cut(s) 115, 1367, 1756
TasI AATT 9 cut(s) 50, 117, 186, 628, 823, 865, 1363, 1592, 1619
TatI WGTACW 5 cut(s) 223, 269, 496, 1161, 1417
TfiI GAWTC 8 cut(s) 298, 377, 443, 942, 983, 1067, 1322, 1576
Tru1I TTAA 7 cut(s) 189, 231, 1029, 1140, 1353, 1404, 1884
Tru9I TTAA 7 cut(s) 189, 231, 1029, 1140, 1353, 1404, 1884
TscAI CASTG 2 cut(s) 364, 1258
TseI GCWGC 3 cut(s) 955, 1508, 1733
TspDTI ATGAA 7 cut(s) 62, 166, 752, 816, 1028, 1602, 1694
TspGWI ACGGA 3 cut(s) 718, 952, 1224
TspRI CASTG 2 cut(s) 364, 1258
VneI GTGCAC 1 cut(s) 1249
VpaK11BI GGWCC 2 cut(s) 193, 700
XapI RAATTY 5 cut(s) 117, 823, 865, 1363, 1592
XceI RCATGY 5 cut(s) 104, 230, 685, 931, 1770
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 1462
XspI CTAG 4 cut(s) 140, 332, 593, 597
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.