Rh4DG358200

Prolyl oligopeptidase, N-terminal beta-propeller domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014498
Physical Location & Seq
Reverse (-)
57901252 .. 57904517
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG358200.1

Sequence Viewer

Length: 1491 bp
ATGGTTTATTTGATAGATTCTGCCAACCCATTAGACAGATTGCAGAAAGTGTGGAAGCGTGTTCCTGGTGTACAGTATTTTCTGGAACATCATCATGGAATATTTTATGTTCTTACTAATGCTCCTTTGCGAGAAAGCAAGGAGTGGTCAGGTGAAGGTTATTACCTAGCTAGATGCTGTGTTGAAGATATACTGTCGTCTAATTGGCAGAATATCATCATTCCAAGTGAAGACTTCAGCATTCAAGATATGGACATGTTTGATGGGCATCTGGTCCTTTTTCTCAACAAGAAGGATTACTCCGTCTTTTGTTCCATTGATTTGCCTATGGCTGTTCATTGTAAGCATCAAGTGAAGATTGAAGATCTTGATCCCTGGTTTTTCCCTCTGCCCTCAAATTCATGTAGCGTTGCTCCAGGTTCAAACCATGACTTCCAGAATTCAGCATACCGTGTGGTGCTTTCTTCTCCTGTGATGCCTGATGTAGTTGTTGACTATGACATGTCAACACGGAAATTCTCAGTTGTGCAGCAAGAAGAAGTGATGGGCTTTTGTGATTCAAGCTCACCAGCCAATGAGATAGATATTAACCAAACTCTTGTTAAACAAAATGAGAAGGATAAAAATGTCCAGATAAGTGAATCACAAAGATGGAAAGACTTTTCTGGTGAATACTGCTGTGAGAGGAGGGAAGTTATTTCCCAAGATGGTGTTAAAGTTCCTTTGACCCTACTGTACTCTCATACGGCCTGGAAAAAGGGTCGGTCTCCTGGGCTTCTACACGGATATGGAGCATATGGGGAGGTTTTAGATAAAAGCTGGTGCACCGATCGGCTGAGTTTACTTGACCGGGGATGGGTGGTGGCATTTGCTGATGTGAGGGGTGGTGGTGGAGATTCTTCGTGGCATAAAGCTGGAAGTCAGTTTAATAAACTGAATTCGATATACGATTTTGTATCATGTGGCAACTACCTGATTAAAGAGGGTTATGTACATAGCGATCAGCTTGGTGCTATTGGACATAGTGCTGGAGGTCTACTTGTTGGAGCAACTATCAATAAGTACCCAGATCTATTTCGTGCTGCTATTTTGAAGGTTCCATTTCTTGACGTATGCAACACTCTAATGGATCCCAGCTTGCCCCTCACGATTCTGGATTATGAAGAATTTGGCAATCCTCAGATAAAGTCCCAATTTGAGCATATCTTGAGTTATTCACCTTATGATAATATCTCTCAAGGCAGTTGTTACCCTTCAATGCTTGTTACAGCGTCCTTTCATGACTCGAGGGTCGGGTTTTGGGAAGCTGCCAAGTGGGTGGCCAAAGTTCGAGATAGCACATGTCCTCGTTGTTCTTGTTCTGTTATTCTGAAGACAAATATGACCGGAGGACATTTTGGCGAAGGTGGACGCTATGCTCAAAATGAGGAAACTGCATATGATTATGCTTTCCTTTTTAAAGCTATGGGGATGCTGAAGAATGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S9 Peptidase_S9_N

Protein Analysis

496

Amino Acids

55.91

Weight (kDa)

5.54

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9 PF00326 278 - 490 2.9e-45 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69020 AT1G69020
fragaria_vesca FvH4_4g29260
malus_domestica MD13G1056200.v1.1
prunus_persica Prupe.1G293900_v2.0.a1
pyrus_communis pycom13g05020
rosa_chinensis RchiOBHm_Chr4g0437311
rosa_laevigata RLG00000006447
rosa_multiflora Rmu_co8522681.1_g000001 Rmu_sc0004339.1_g000034
rosa_roxburghii Rroxscaffold_5G00378460
rosa_rugosa Rorug04G0299500
rosa_samantha Rh4AG354500 Rh4BG364300 Rh4CG378600 Rh4DG358200
rosa_wichuraiana Rw4G031080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1289
AccI GTMKAC 1 cut(s) 1036
AclWI GGATC 3 cut(s) 365, 1124, 1137
AcoI YGGCCR 1 cut(s) 1320
AcsI RAATTY 5 cut(s) 397, 439, 515, 937, 1166
AcuI CTGAAG 2 cut(s) 220, 1391
AfaI GTAC 4 cut(s) 72, 737, 993, 1064
AfiI CCNNNNNNNGG 1 cut(s) 856
AflIII ACRYGT 3 cut(s) 255, 501, 1340
AgsI TTSAA 7 cut(s) 185, 245, 362, 423, 561, 1093, 1257
AjnI CCWGG 5 cut(s) 64, 374, 415, 749, 769
AluBI AGCT 8 cut(s) 170, 564, 819, 914, 1006, 1137, 1307, 1463
AluI AGCT 8 cut(s) 170, 564, 819, 914, 1006, 1137, 1307, 1463
Alw21I GWGCWC 1 cut(s) 827
Alw26I GTCTC 1 cut(s) 771
Alw44I GTGCAC 1 cut(s) 823
AlwI GGATC 3 cut(s) 365, 1124, 1137
Ama87I CYCGRG 1 cut(s) 1285
AoxI GGCC 2 cut(s) 747, 1320
ApaLI GTGCAC 1 cut(s) 823
ApeKI GCWGC 3 cut(s) 529, 1082, 1307
ApoI RAATTY 5 cut(s) 397, 439, 515, 937, 1166
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 4 cut(s) 164, 558, 680, 1209
AvaI CYCGRG 1 cut(s) 1285
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 827
BalI TGGCCA 1 cut(s) 1322
BamHI GGATCC 1 cut(s) 1129
BbsI GAAGAC 2 cut(s) 237, 1379
Bbv12I GWGCWC 1 cut(s) 827
BbvI GCAGC 3 cut(s) 541, 1069, 1294
BccI CCATC 5 cut(s) 257, 538, 645, 701, 849
BceAI ACGGC 1 cut(s) 762
BciT130I CCWGG 5 cut(s) 66, 376, 417, 751, 771
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 1 cut(s) 771
BfaI CTAG 2 cut(s) 167, 171
BglII AGATCT 2 cut(s) 364, 1069
BisI GCNGC 3 cut(s) 530, 1083, 1308
BlsI GCNGC 3 cut(s) 531, 1084, 1309
Bme1390I CCNGG 6 cut(s) 66, 376, 417, 751, 771, 851
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 1285
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 1098, 1131
BmrFI CCNGG 6 cut(s) 66, 376, 417, 751, 771, 851
BmsI GCATC 5 cut(s) 164, 277, 355, 465, 1461
BpiI GAAGAC 2 cut(s) 237, 1379
BpmI CTGGAG 2 cut(s) 399, 1050
BpuEI CTTGAG 2 cut(s) 1221, 1228
BpuMI CCSGG 1 cut(s) 851
BsaBI GATNNNNATC 2 cut(s) 267, 369
BsaI GGTCTC 1 cut(s) 771
BsaJI CCNNGG 3 cut(s) 374, 770, 850
BsaWI WCCGGW 1 cut(s) 1385
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 856
Bse8I GATNNNNATC 2 cut(s) 267, 369
BseBI CCWGG 5 cut(s) 66, 376, 417, 751, 771
BseDI CCNNGG 3 cut(s) 374, 770, 850
BseGI GGATG 2 cut(s) 860, 1476
BseJI GATNNNNATC 2 cut(s) 267, 369
BseLI CCNNNNNNNGG 1 cut(s) 856
BseMII CTCAG 3 cut(s) 534, 827, 1193
BseRI GAGGAG 1 cut(s) 700
BseSI GKGCMC 1 cut(s) 827
BseXI GCAGC 3 cut(s) 541, 1069, 1294
BseYI CCCAGC 1 cut(s) 1133
BsgI GTGCAG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 2 cut(s) 749, 1322
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 827
BsiHKCI CYCGRG 1 cut(s) 1285
BsiSI CCGG 2 cut(s) 850, 1386
BslFI GGGAC 1 cut(s) 1174
BslI CCNNNNNNNGG 1 cut(s) 856
BsmAI GTCTC 1 cut(s) 771
BsmFI GGGAC 1 cut(s) 1174
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 2 cut(s) 749, 1322
Bso31I GGTCTC 1 cut(s) 771
BsoBI CYCGRG 1 cut(s) 1285
Bsp1286I GDGCHC 1 cut(s) 827
Bsp1407I TGTACA 2 cut(s) 70, 991
Bsp143I GATC 6 cut(s) 364, 370, 829, 1000, 1069, 1129
BspANI GGCC 2 cut(s) 749, 1322
BspCNI CTCAG 3 cut(s) 533, 828, 1192
BspHI TCATGA 1 cut(s) 1279
BspLI GGNNCC 2 cut(s) 1098, 1131
BspPI GGATC 3 cut(s) 365, 1124, 1137
BspTNI GGTCTC 1 cut(s) 771
BsrGI TGTACA 2 cut(s) 70, 991
BssECI CCNNGG 3 cut(s) 374, 770, 850
BssMI GATC 6 cut(s) 364, 370, 829, 1000, 1069, 1129
Bst2UI CCWGG 5 cut(s) 66, 376, 417, 751, 771
Bst4CI ACNGT 4 cut(s) 75, 195, 452, 735
BstAUI TGTACA 2 cut(s) 70, 991
BstC8I GCNNGC 1 cut(s) 1139
BstDEI CTNAG 3 cut(s) 520, 836, 1179
BstF5I GGATG 2 cut(s) 860, 1476
BstKTI GATC 6 cut(s) 367, 373, 832, 1003, 1072, 1132
BstMAI GTCTC 1 cut(s) 771
BstMBI GATC 6 cut(s) 364, 370, 829, 1000, 1069, 1129
BstMCI CGRYCG 1 cut(s) 832
BstNI CCWGG 5 cut(s) 66, 376, 417, 751, 771
BstNSI RCATGY 3 cut(s) 259, 505, 1344
BstSCI CCNGG 6 cut(s) 64, 374, 415, 749, 769, 849
BstSLI GKGCMC 1 cut(s) 827
BstV1I GCAGC 3 cut(s) 541, 1069, 1294
BstV2I GAAGAC 2 cut(s) 237, 1379
BstX2I RGATCY 3 cut(s) 364, 1069, 1129
BstXI CCANNNNNNTGG 1 cut(s) 1318
BstYI RGATCY 3 cut(s) 364, 1069, 1129
BsuRI GGCC 2 cut(s) 749, 1322
BtsCI GGATG 2 cut(s) 860, 1476
Cac8I GCNNGC 1 cut(s) 1139
CciI TCATGA 1 cut(s) 1279
Cfr13I GGNCC 1 cut(s) 274
CseI GACGC 2 cut(s) 1260, 1419
Csp6I GTAC 4 cut(s) 71, 736, 992, 1063
CviAII CATG 8 cut(s) 95, 256, 402, 428, 502, 960, 1280, 1341
CviQI GTAC 4 cut(s) 71, 736, 992, 1063
DdeI CTNAG 3 cut(s) 520, 836, 1179
DpnI GATC 6 cut(s) 366, 372, 831, 1002, 1071, 1131
DpnII GATC 6 cut(s) 364, 370, 829, 1000, 1069, 1129
DraI TTTAAA 1 cut(s) 1459
DrdI GACNNNNNNGTC 1 cut(s) 1289
DseDI GACNNNNNNGTC 1 cut(s) 1289
EaeI YGGCCR 1 cut(s) 1320
Eco31I GGTCTC 1 cut(s) 771
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 220, 1391
Eco88I CYCGRG 1 cut(s) 1285
EcoRI GAATTC 2 cut(s) 439, 937
EcoRII CCWGG 5 cut(s) 64, 374, 415, 749, 769
FaeI CATG 8 cut(s) 98, 259, 405, 431, 505, 963, 1283, 1344
FaqI GGGAC 1 cut(s) 1174
FatI CATG 8 cut(s) 94, 255, 401, 427, 501, 959, 1279, 1340
FauNDI CATATG 2 cut(s) 796, 1438
FblI GTMKAC 1 cut(s) 1036
Fnu4HI GCNGC 3 cut(s) 530, 1083, 1308
FokI GGATG 2 cut(s) 867, 1483
Fsp4HI GCNGC 3 cut(s) 530, 1083, 1308
FspBI CTAG 2 cut(s) 167, 171
GluI GCNGC 3 cut(s) 530, 1083, 1308
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 2 cut(s) 399, 1050
HaeIII GGCC 2 cut(s) 749, 1322
HapII CCGG 2 cut(s) 850, 1386
HgaI GACGC 2 cut(s) 1260, 1419
Hin1II CATG 8 cut(s) 98, 259, 405, 431, 505, 963, 1283, 1344
HincII GTYRAC 2 cut(s) 493, 507
HindII GTYRAC 2 cut(s) 493, 507
HinfI GANTC 6 cut(s) 17, 557, 641, 896, 1150, 1283
HpaII CCGG 2 cut(s) 850, 1386
HphI GGTGA 4 cut(s) 164, 558, 680, 1209
Hpy166II GTNNAC 7 cut(s) 71, 493, 507, 825, 842, 1037, 1409
Hpy188I TCNGA 2 cut(s) 1182, 1371
Hpy8I GTNNAC 7 cut(s) 71, 493, 507, 825, 842, 1037, 1409
HpyAV CCTTC 6 cut(s) 149, 286, 610, 1087, 1263, 1397
HpyCH4III ACNGT 4 cut(s) 75, 195, 452, 735
HpyCH4IV ACGT 1 cut(s) 1110
HpyCH4V TGCA 5 cut(s) 43, 529, 825, 1116, 1436
HpyF3I CTNAG 3 cut(s) 520, 836, 1179
HpySE526I ACGT 1 cut(s) 1110
Hsp92II CATG 8 cut(s) 98, 259, 405, 431, 505, 963, 1283, 1344
Kzo9I GATC 6 cut(s) 364, 370, 829, 1000, 1069, 1129
LmnI GCTCC 4 cut(s) 127, 418, 791, 1046
Lsp1109I GCAGC 3 cut(s) 541, 1069, 1294
LweI GCATC 5 cut(s) 164, 277, 355, 465, 1461
MaeI CTAG 2 cut(s) 167, 171
MaeII ACGT 1 cut(s) 1110
MaeIII GTNAC 2 cut(s) 1247, 1264
MalI GATC 6 cut(s) 366, 372, 831, 1002, 1071, 1131
MboI GATC 6 cut(s) 364, 370, 829, 1000, 1069, 1129
MflI RGATCY 3 cut(s) 364, 1069, 1129
MhlI GDGCHC 1 cut(s) 827
MlsI TGGCCA 1 cut(s) 1322
MluCI AATT 7 cut(s) 202, 397, 439, 515, 937, 1166, 1193
MluNI TGGCCA 1 cut(s) 1322
MlyI GAGTC 1 cut(s) 1277
MmeI TCCRAC 1 cut(s) 1024
Mox20I TGGCCA 1 cut(s) 1322
MscI TGGCCA 1 cut(s) 1322
MseI TTAA 6 cut(s) 588, 603, 714, 927, 978, 1458
MslI CAYNNNNRTG 4 cut(s) 93, 649, 786, 1124
Msp20I TGGCCA 1 cut(s) 1322
MspI CCGG 2 cut(s) 850, 1386
MspR9I CCNGG 6 cut(s) 66, 376, 417, 751, 771, 851
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 5 cut(s) 66, 376, 417, 751, 771
NciI CCSGG 1 cut(s) 851
NdeI CATATG 2 cut(s) 796, 1438
NdeII GATC 6 cut(s) 364, 370, 829, 1000, 1069, 1129
NlaIII CATG 8 cut(s) 98, 259, 405, 431, 505, 963, 1283, 1344
NlaIV GGNNCC 2 cut(s) 1098, 1131
NspI RCATGY 3 cut(s) 259, 505, 1344
PaeR7I CTCGAG 1 cut(s) 1285
PagI TCATGA 1 cut(s) 1279
PciI ACATGT 3 cut(s) 255, 501, 1340
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 5 cut(s) 17, 557, 641, 896, 1150
PkrI GCNGC 3 cut(s) 531, 1084, 1309
Ple19I CGATCG 1 cut(s) 832
PleI GAGTC 1 cut(s) 1277
PpsI GAGTC 1 cut(s) 1277
PscI ACATGT 3 cut(s) 255, 501, 1340
Psp6I CCWGG 5 cut(s) 64, 374, 415, 749, 769
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 5 cut(s) 64, 374, 415, 749, 769
PspN4I GGNNCC 2 cut(s) 1098, 1131
PspPI GGNCC 1 cut(s) 274
PspXI VCTCGAGB 1 cut(s) 1285
PsuI RGATCY 3 cut(s) 364, 1069, 1129
PvuI CGATCG 1 cut(s) 832
RsaI GTAC 4 cut(s) 72, 737, 993, 1064
RsaNI GTAC 4 cut(s) 71, 736, 992, 1063
RseI CAYNNNNRTG 4 cut(s) 93, 649, 786, 1124
SaqAI TTAA 6 cut(s) 588, 603, 714, 927, 978, 1458
SatI GCNGC 3 cut(s) 530, 1083, 1308
Sau3AI GATC 6 cut(s) 364, 370, 829, 1000, 1069, 1129
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 1277
ScrFI CCNGG 6 cut(s) 66, 376, 417, 751, 771, 851
SduI GDGCHC 1 cut(s) 827
SfaNI GCATC 5 cut(s) 164, 277, 355, 465, 1461
Sfr274I CTCGAG 1 cut(s) 1285
SinI GGWCC 1 cut(s) 274
SlaI CTCGAG 1 cut(s) 1285
SmiMI CAYNNNNRTG 4 cut(s) 93, 649, 786, 1124
SmlI CTYRAG 3 cut(s) 1207, 1236, 1285
SmoI CTYRAG 3 cut(s) 1207, 1236, 1285
Sse9I AATT 7 cut(s) 202, 397, 439, 515, 937, 1166, 1193
SspI AATATT 1 cut(s) 102
SspMI CTAG 2 cut(s) 167, 171
StyD4I CCNGG 6 cut(s) 64, 374, 415, 749, 769, 849
TaaI ACNGT 4 cut(s) 75, 195, 452, 735
TaiI ACGT 1 cut(s) 1113
TaqI TCGA 3 cut(s) 941, 1286, 1330
TaqII GACCGA 1 cut(s) 753
TasI AATT 7 cut(s) 202, 397, 439, 515, 937, 1166, 1193
TatI WGTACW 3 cut(s) 70, 735, 991
TfiI GAWTC 5 cut(s) 17, 557, 641, 896, 1150
Tru1I TTAA 6 cut(s) 588, 603, 714, 927, 978, 1458
Tru9I TTAA 6 cut(s) 588, 603, 714, 927, 978, 1458
TseI GCWGC 3 cut(s) 529, 1082, 1307
TspDTI ATGAA 4 cut(s) 326, 390, 1176, 1268
TspGWI ACGGA 3 cut(s) 292, 526, 798
VneI GTGCAC 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 5 cut(s) 397, 439, 515, 937, 1166
XceI RCATGY 3 cut(s) 259, 505, 1344
XhoI CTCGAG 1 cut(s) 1285
XmiI GTMKAC 1 cut(s) 1036
XspI CTAG 2 cut(s) 167, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.