Rh4BG364300

Prolyl oligopeptidase, N-terminal beta-propeller domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014498
Physical Location & Seq
Reverse (-)
52221112 .. 52223744
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG364300.1

Sequence Viewer

Length: 1104 bp
ATGGTTTATTTGATAGATTCTGCCAACCCATTAGACAGATTGCAGAAAGTGTGGAAGCGTGTTCCTGGTGTACAGTATTTTCTGGAACATCATCATGGAATATTTTATGTTCTTACTAATGCTCCTTTGCGAGAAAGCAAGGAGTGGTCAGGTGAAGGTTATTACCTAGCTAGATGCCGTGTTGAAGATATACTGTCATCTAATTGGCAGAATATCATCATTCCAAGTGAAGACTTCAGCATTCAAGACATGGACATGTTTGATGGGCATCTGGTCCTTTTTCTCAACAAGAAGGATTGCTCCATCTTTTGTTCCATTGATTTGCCTATGGCTGTTCATTGTAAGCATCAAGTGATTGAAGATCTTGATCCCTGGTTTTTCCCTCTGCCCTCAAATTCATGTAGCGTTGCTCCAGGTTCAAACCATGACTTCCAGAATTCAGCATACCGTGTGGTGCTTTCTTCTCCTGTGATGCCTGATGTAGTTGTTGACTATGACATGTCAACACGGAGATTCTCAGTTGTGCAGCAAGAAGAAGTGATGGGCTTTTGTGATTCAAGCTCACCAGCCAATGAGATAGATATGAACCAAACTCTTGTTAAACAAAATGAGAAGGATAAAAATGTCCAGATAAGTGAATCACAAAGATGGAAAGACTTTTCTGGTGAATACTGCTGTGAGAAGAGGGAAGTTATTTCCCATGATGGTGTTAAAGTTCCTTTGACCCTACTGTACTCTCATACGGCCTGGAAAAAGGGTCGGTCTCCTGGGCTTCTACACGGATATGGAGCATATGGGGAGGTTTTAGATAAAAGCTGGTGCACTGATCGGCTGAGTTTACTTGACCGGGGATGGGTGGTGGCATTTGCTGATGTGAGGGGTAGTGGTGGAGATTCTTCGTGGCATAAAGCTGGAAGTCAGTTTAATAAACTGAATTCGATATACGATTTTGTATCATGTGGCAACTACCTGATTAAAGAGGGTTATGTACATAGCGATCAGCTTGGTGCTATTGGACATAGTGCTGGAGGTCTACTTGTTGGAGCAACTATCAATAAGTACCCAGATCTATTTCGTGCTGCTATTTTGAAGGTTATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S9 Peptidase_S9_N

Protein Analysis

367

Amino Acids

41.49

Weight (kDa)

5.7

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9 PF00326 277 - 365 7.8e-22 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69020 AT1G69020
fragaria_vesca FvH4_4g29260
malus_domestica MD13G1056200.v1.1
prunus_persica Prupe.1G293900_v2.0.a1
pyrus_communis pycom13g05020
rosa_chinensis RchiOBHm_Chr4g0437311
rosa_laevigata RLG00000006447
rosa_multiflora Rmu_co8522681.1_g000001 Rmu_sc0004339.1_g000034
rosa_roxburghii Rroxscaffold_5G00378460
rosa_rugosa Rorug04G0299500
rosa_samantha Rh4AG354500 Rh4BG364300 Rh4CG378600 Rh4DG358200
rosa_wichuraiana Rw4G031080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1033
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 3 cut(s) 394, 436, 934
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 4 cut(s) 72, 734, 990, 1061
AfiI CCNNNNNNNGG 1 cut(s) 853
AflIII ACRYGT 2 cut(s) 255, 498
AgsI TTSAA 6 cut(s) 185, 245, 359, 420, 558, 1090
AjnI CCWGG 5 cut(s) 64, 371, 412, 746, 766
AluBI AGCT 5 cut(s) 170, 561, 816, 911, 1003
AluI AGCT 5 cut(s) 170, 561, 816, 911, 1003
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 1 cut(s) 768
Alw44I GTGCAC 1 cut(s) 820
AlwI GGATC 1 cut(s) 362
AoxI GGCC 1 cut(s) 744
ApaLI GTGCAC 1 cut(s) 820
ApeKI GCWGC 2 cut(s) 526, 1079
ApoI RAATTY 3 cut(s) 394, 436, 934
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 848
AsuHPI GGTGA 3 cut(s) 164, 555, 677
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 824
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 824
BbvI GCAGC 2 cut(s) 538, 1066
BccI CCATC 6 cut(s) 257, 311, 535, 642, 698, 846
BceAI ACGGC 2 cut(s) 162, 759
BciT130I CCWGG 5 cut(s) 66, 373, 414, 748, 768
BcnI CCSGG 1 cut(s) 848
BcoDI GTCTC 1 cut(s) 768
BfaI CTAG 2 cut(s) 167, 171
BglII AGATCT 2 cut(s) 361, 1066
BisI GCNGC 2 cut(s) 527, 1080
BlsI GCNGC 2 cut(s) 528, 1081
Bme1390I CCNGG 6 cut(s) 66, 373, 414, 748, 768, 848
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmrFI CCNGG 6 cut(s) 66, 373, 414, 748, 768, 848
BmsI GCATC 4 cut(s) 164, 277, 355, 462
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 396, 1047
BpuMI CCSGG 1 cut(s) 848
BsaBI GATNNNNATC 2 cut(s) 267, 366
BsaI GGTCTC 1 cut(s) 768
BsaJI CCNNGG 3 cut(s) 371, 767, 847
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 853
Bse8I GATNNNNATC 2 cut(s) 267, 366
BseBI CCWGG 5 cut(s) 66, 373, 414, 748, 768
BseDI CCNNGG 3 cut(s) 371, 767, 847
BseGI GGATG 1 cut(s) 857
BseJI GATNNNNATC 2 cut(s) 267, 366
BseLI CCNNNNNNNGG 1 cut(s) 853
BseMII CTCAG 2 cut(s) 531, 824
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 2 cut(s) 538, 1066
BsgI GTGCAG 1 cut(s) 545
BshFI GGCC 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 824
BsiSI CCGG 1 cut(s) 847
BslI CCNNNNNNNGG 1 cut(s) 853
BsmAI GTCTC 1 cut(s) 768
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 746
Bso31I GGTCTC 1 cut(s) 768
Bsp1286I GDGCHC 1 cut(s) 824
Bsp1407I TGTACA 2 cut(s) 70, 988
Bsp143I GATC 5 cut(s) 361, 367, 826, 997, 1066
BspANI GGCC 1 cut(s) 746
BspCNI CTCAG 2 cut(s) 530, 825
BspPI GGATC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 768
BsrGI TGTACA 2 cut(s) 70, 988
BssECI CCNNGG 3 cut(s) 371, 767, 847
BssMI GATC 5 cut(s) 361, 367, 826, 997, 1066
Bst2UI CCWGG 5 cut(s) 66, 373, 414, 748, 768
Bst4CI ACNGT 4 cut(s) 75, 195, 449, 732
Bst6I CTCTTC 1 cut(s) 677
BstAUI TGTACA 2 cut(s) 70, 988
BstDEI CTNAG 2 cut(s) 517, 833
BstF5I GGATG 1 cut(s) 857
BstKTI GATC 5 cut(s) 364, 370, 829, 1000, 1069
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 5 cut(s) 361, 367, 826, 997, 1066
BstNI CCWGG 5 cut(s) 66, 373, 414, 748, 768
BstNSI RCATGY 2 cut(s) 259, 502
BstSCI CCNGG 6 cut(s) 64, 371, 412, 746, 766, 846
BstSLI GKGCMC 1 cut(s) 824
BstV1I GCAGC 2 cut(s) 538, 1066
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 361, 1066
BstYI RGATCY 2 cut(s) 361, 1066
BsuRI GGCC 1 cut(s) 746
BtsCI GGATG 1 cut(s) 857
BtsIMutI CAGTG 1 cut(s) 822
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 4 cut(s) 71, 733, 989, 1060
CviAII CATG 8 cut(s) 95, 250, 256, 399, 425, 499, 701, 957
CviQI GTAC 4 cut(s) 71, 733, 989, 1060
DdeI CTNAG 2 cut(s) 517, 833
DpnI GATC 5 cut(s) 363, 369, 828, 999, 1068
DpnII GATC 5 cut(s) 361, 367, 826, 997, 1066
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
Eco31I GGTCTC 1 cut(s) 768
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 220
EcoRI GAATTC 2 cut(s) 436, 934
EcoRII CCWGG 5 cut(s) 64, 371, 412, 746, 766
FaeI CATG 8 cut(s) 98, 253, 259, 402, 428, 502, 704, 960
FatI CATG 8 cut(s) 94, 249, 255, 398, 424, 498, 700, 956
FauNDI CATATG 1 cut(s) 793
FblI GTMKAC 1 cut(s) 1033
Fnu4HI GCNGC 2 cut(s) 527, 1080
FokI GGATG 1 cut(s) 864
Fsp4HI GCNGC 2 cut(s) 527, 1080
FspBI CTAG 2 cut(s) 167, 171
GluI GCNGC 2 cut(s) 527, 1080
GsuI CTGGAG 2 cut(s) 396, 1047
HaeIII GGCC 1 cut(s) 746
HapII CCGG 1 cut(s) 847
Hin1II CATG 8 cut(s) 98, 253, 259, 402, 428, 502, 704, 960
HincII GTYRAC 2 cut(s) 490, 504
HindII GTYRAC 2 cut(s) 490, 504
HinfI GANTC 5 cut(s) 17, 513, 554, 638, 893
HpaII CCGG 1 cut(s) 847
HphI GGTGA 3 cut(s) 164, 555, 677
Hpy166II GTNNAC 6 cut(s) 71, 490, 504, 822, 839, 1034
Hpy188III TCNNGA 5 cut(s) 83, 245, 365, 433, 628
Hpy8I GTNNAC 6 cut(s) 71, 490, 504, 822, 839, 1034
HpyAV CCTTC 4 cut(s) 149, 286, 607, 1084
HpyCH4III ACNGT 4 cut(s) 75, 195, 449, 732
HpyCH4V TGCA 3 cut(s) 43, 526, 822
HpyF3I CTNAG 2 cut(s) 517, 833
Hsp92II CATG 8 cut(s) 98, 253, 259, 402, 428, 502, 704, 960
Kzo9I GATC 5 cut(s) 361, 367, 826, 997, 1066
LmnI GCTCC 5 cut(s) 127, 305, 415, 788, 1043
Lsp1109I GCAGC 2 cut(s) 538, 1066
LweI GCATC 4 cut(s) 164, 277, 355, 462
MaeI CTAG 2 cut(s) 167, 171
MalI GATC 5 cut(s) 363, 369, 828, 999, 1068
MboI GATC 5 cut(s) 361, 367, 826, 997, 1066
MboII GAAGA 7 cut(s) 197, 242, 371, 453, 545, 694, 888
MflI RGATCY 2 cut(s) 361, 1066
MhlI GDGCHC 1 cut(s) 824
MluCI AATT 4 cut(s) 202, 394, 436, 934
MmeI TCCRAC 1 cut(s) 1021
MnlI CCTC 7 cut(s) 393, 400, 678, 793, 870, 973, 1022
MseI TTAA 5 cut(s) 600, 711, 924, 975, 1102
MslI CAYNNNNRTG 5 cut(s) 93, 254, 646, 705, 783
MspI CCGG 1 cut(s) 847
MspR9I CCNGG 6 cut(s) 66, 373, 414, 748, 768, 848
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 5 cut(s) 66, 373, 414, 748, 768
NciI CCSGG 1 cut(s) 848
NdeI CATATG 1 cut(s) 793
NdeII GATC 5 cut(s) 361, 367, 826, 997, 1066
NlaIII CATG 8 cut(s) 98, 253, 259, 402, 428, 502, 704, 960
NspI RCATGY 2 cut(s) 259, 502
PciI ACATGT 2 cut(s) 255, 498
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 5 cut(s) 17, 513, 554, 638, 893
PkrI GCNGC 2 cut(s) 528, 1081
PscI ACATGT 2 cut(s) 255, 498
Psp6I CCWGG 5 cut(s) 64, 371, 412, 746, 766
PspGI CCWGG 5 cut(s) 64, 371, 412, 746, 766
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 2 cut(s) 361, 1066
RsaI GTAC 4 cut(s) 72, 734, 990, 1061
RsaNI GTAC 4 cut(s) 71, 733, 989, 1060
RseI CAYNNNNRTG 5 cut(s) 93, 254, 646, 705, 783
SaqAI TTAA 5 cut(s) 600, 711, 924, 975, 1102
SatI GCNGC 2 cut(s) 527, 1080
Sau3AI GATC 5 cut(s) 361, 367, 826, 997, 1066
Sau96I GGNCC 1 cut(s) 274
ScrFI CCNGG 6 cut(s) 66, 373, 414, 748, 768, 848
SduI GDGCHC 1 cut(s) 824
SfaNI GCATC 4 cut(s) 164, 277, 355, 462
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 5 cut(s) 93, 254, 646, 705, 783
Sse9I AATT 4 cut(s) 202, 394, 436, 934
SspI AATATT 1 cut(s) 102
SspMI CTAG 2 cut(s) 167, 171
StyD4I CCNGG 6 cut(s) 64, 371, 412, 746, 766, 846
TaaI ACNGT 4 cut(s) 75, 195, 449, 732
TaqI TCGA 1 cut(s) 938
TaqII GACCGA 1 cut(s) 750
TasI AATT 4 cut(s) 202, 394, 436, 934
TatI WGTACW 3 cut(s) 70, 732, 988
TfiI GAWTC 5 cut(s) 17, 513, 554, 638, 893
Tru1I TTAA 5 cut(s) 600, 711, 924, 975, 1102
Tru9I TTAA 5 cut(s) 600, 711, 924, 975, 1102
TscAI CASTG 1 cut(s) 829
TseI GCWGC 2 cut(s) 526, 1079
TspDTI ATGAA 3 cut(s) 326, 387, 599
TspGWI ACGGA 2 cut(s) 523, 795
TspRI CASTG 1 cut(s) 829
VneI GTGCAC 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 3 cut(s) 394, 436, 934
XceI RCATGY 2 cut(s) 259, 502
XmiI GTMKAC 1 cut(s) 1033
XspI CTAG 2 cut(s) 167, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.