Rh4AG354500

Prolyl oligopeptidase, N-terminal beta-propeller domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014498
Physical Location & Seq
Reverse (-)
66315425 .. 66318069
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG354500.1

Sequence Viewer

Length: 1107 bp
ATGGTTTATTTGATAGATTCTGCCAACCCATTAGACAGATTGCAGAAAGTGTGGAAGCGTGTTCCTGGTGTACAGTATTTTCTGGAACATCATCATGGAATATTTTATGTTCTTACTAATGCTCCTTTGCGAGAAAGCAAGGAGTGGTCAGGTGAAGGTTATTACCTAGCTAGATGCTGTGTTGAAGATATACTGTCGTCTAATTGGCAGAATATCATCATTCCAAGTGAAGACTTCAGCATTCAAGATATGGACATGTTTGATGGGCATCTGGTCCTTTTTCTCAACAAGAAGGATTACTCCGTCTTTTGTTCCATTGATTTGCCTATGGCTGTTCATTGTAAGCATCAAGTGAAGATTGAAGATCTTGATCCCTGGTTTTTCCCTCTGCCCTCAAATTCATGTAGCGTTGCTCCAGGTTCAAACCATGACTTCCAGAATTCAGCATACCGTGTGGTGCTTTCTTCTCCTGTGATGCCTGATGTAGTTGTTGACTATGACATGTCAACACGGAAATTCTCAGTTGTGCAGCAAGAAGAAGTGATGGGCTTTTGTGATTCAAGCTCACCAGCCAATGAGATAGATATTAACCAAACTCTTGTTAAACAAAATGAGAAGGATAAAAATGTCCAGATAAGTGAATCACAAAGATGGAAAGACTTTTCTGGTGAATACTGCTGTGAGAGGAGGGAAGTTATTTCCCAAGATGGTGTTAAAGTTCCTTTGACCCTACTGTACTCTCATACGGCCTGGAAAAAGGGTCGGTCTCCTGGGCTTCTACACGGATATGGAGCATATGGGGAGGTTTTAGATAAAAGCTGGTGCACCGATCGGCTGAGTTTACTTGACCGGGGATGGGTGGTGGCATTTGCTGATGTGAGGGGTGGTGGTGGAGATTCTTCGTGGCATAAAGCTGGAAGTCAGTTTAATAAACTGAATTCGATATACGATTTTGTATCATGTGGCAACTACCTGATTAAAGAGGGTTATGTACATAGCGATCAGCTTGGTGCTATTGGACATAGTGCTGGAGGTCTACTTGTTGGAGCAACTATCAATAAGTACCCAGATCTATTTCGTGCTGCTATTTTGAAGGTTATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S9 Peptidase_S9_N

Protein Analysis

368

Amino Acids

41.55

Weight (kDa)

5.63

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9 PF00326 278 - 366 1.2e-21 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69020 AT1G69020
fragaria_vesca FvH4_4g29260
malus_domestica MD13G1056200.v1.1
prunus_persica Prupe.1G293900_v2.0.a1
pyrus_communis pycom13g05020
rosa_chinensis RchiOBHm_Chr4g0437311
rosa_laevigata RLG00000006447
rosa_multiflora Rmu_co8522681.1_g000001 Rmu_sc0004339.1_g000034
rosa_roxburghii Rroxscaffold_5G00378460
rosa_rugosa Rorug04G0299500
rosa_samantha Rh4AG354500 Rh4BG364300 Rh4CG378600 Rh4DG358200
rosa_wichuraiana Rw4G031080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1036
AclWI GGATC 1 cut(s) 365
AcsI RAATTY 4 cut(s) 397, 439, 515, 937
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 4 cut(s) 72, 737, 993, 1064
AfiI CCNNNNNNNGG 1 cut(s) 856
AflIII ACRYGT 2 cut(s) 255, 501
AgsI TTSAA 6 cut(s) 185, 245, 362, 423, 561, 1093
AjnI CCWGG 5 cut(s) 64, 374, 415, 749, 769
AluBI AGCT 5 cut(s) 170, 564, 819, 914, 1006
AluI AGCT 5 cut(s) 170, 564, 819, 914, 1006
Alw21I GWGCWC 1 cut(s) 827
Alw26I GTCTC 1 cut(s) 771
Alw44I GTGCAC 1 cut(s) 823
AlwI GGATC 1 cut(s) 365
AoxI GGCC 1 cut(s) 747
ApaLI GTGCAC 1 cut(s) 823
ApeKI GCWGC 2 cut(s) 529, 1082
ApoI RAATTY 4 cut(s) 397, 439, 515, 937
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 3 cut(s) 164, 558, 680
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 827
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 827
BbvI GCAGC 2 cut(s) 541, 1069
BccI CCATC 5 cut(s) 257, 538, 645, 701, 849
BceAI ACGGC 1 cut(s) 762
BciT130I CCWGG 5 cut(s) 66, 376, 417, 751, 771
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 1 cut(s) 771
BfaI CTAG 2 cut(s) 167, 171
BglII AGATCT 2 cut(s) 364, 1069
BisI GCNGC 2 cut(s) 530, 1083
BlsI GCNGC 2 cut(s) 531, 1084
Bme1390I CCNGG 6 cut(s) 66, 376, 417, 751, 771, 851
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmrFI CCNGG 6 cut(s) 66, 376, 417, 751, 771, 851
BmsI GCATC 4 cut(s) 164, 277, 355, 465
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 2 cut(s) 399, 1050
BpuMI CCSGG 1 cut(s) 851
BsaBI GATNNNNATC 2 cut(s) 267, 369
BsaI GGTCTC 1 cut(s) 771
BsaJI CCNNGG 3 cut(s) 374, 770, 850
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 856
Bse8I GATNNNNATC 2 cut(s) 267, 369
BseBI CCWGG 5 cut(s) 66, 376, 417, 751, 771
BseDI CCNNGG 3 cut(s) 374, 770, 850
BseGI GGATG 1 cut(s) 860
BseJI GATNNNNATC 2 cut(s) 267, 369
BseLI CCNNNNNNNGG 1 cut(s) 856
BseMII CTCAG 2 cut(s) 534, 827
BseRI GAGGAG 1 cut(s) 700
BseSI GKGCMC 1 cut(s) 827
BseXI GCAGC 2 cut(s) 541, 1069
BsgI GTGCAG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 1 cut(s) 749
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 827
BsiSI CCGG 1 cut(s) 850
BslI CCNNNNNNNGG 1 cut(s) 856
BsmAI GTCTC 1 cut(s) 771
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 749
Bso31I GGTCTC 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 827
Bsp1407I TGTACA 2 cut(s) 70, 991
Bsp143I GATC 5 cut(s) 364, 370, 829, 1000, 1069
BspANI GGCC 1 cut(s) 749
BspCNI CTCAG 2 cut(s) 533, 828
BspPI GGATC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 771
BsrGI TGTACA 2 cut(s) 70, 991
BssECI CCNNGG 3 cut(s) 374, 770, 850
BssMI GATC 5 cut(s) 364, 370, 829, 1000, 1069
Bst2UI CCWGG 5 cut(s) 66, 376, 417, 751, 771
Bst4CI ACNGT 4 cut(s) 75, 195, 452, 735
BstAUI TGTACA 2 cut(s) 70, 991
BstDEI CTNAG 2 cut(s) 520, 836
BstF5I GGATG 1 cut(s) 860
BstKTI GATC 5 cut(s) 367, 373, 832, 1003, 1072
BstMAI GTCTC 1 cut(s) 771
BstMBI GATC 5 cut(s) 364, 370, 829, 1000, 1069
BstMCI CGRYCG 1 cut(s) 832
BstNI CCWGG 5 cut(s) 66, 376, 417, 751, 771
BstNSI RCATGY 2 cut(s) 259, 505
BstSCI CCNGG 6 cut(s) 64, 374, 415, 749, 769, 849
BstSLI GKGCMC 1 cut(s) 827
BstV1I GCAGC 2 cut(s) 541, 1069
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 364, 1069
BstYI RGATCY 2 cut(s) 364, 1069
BsuRI GGCC 1 cut(s) 749
BtsCI GGATG 1 cut(s) 860
Cfr13I GGNCC 1 cut(s) 274
Csp6I GTAC 4 cut(s) 71, 736, 992, 1063
CviAII CATG 6 cut(s) 95, 256, 402, 428, 502, 960
CviQI GTAC 4 cut(s) 71, 736, 992, 1063
DdeI CTNAG 2 cut(s) 520, 836
DpnI GATC 5 cut(s) 366, 372, 831, 1002, 1071
DpnII GATC 5 cut(s) 364, 370, 829, 1000, 1069
Eco31I GGTCTC 1 cut(s) 771
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 220
EcoRI GAATTC 2 cut(s) 439, 937
EcoRII CCWGG 5 cut(s) 64, 374, 415, 749, 769
FaeI CATG 6 cut(s) 98, 259, 405, 431, 505, 963
FatI CATG 6 cut(s) 94, 255, 401, 427, 501, 959
FauNDI CATATG 1 cut(s) 796
FblI GTMKAC 1 cut(s) 1036
Fnu4HI GCNGC 2 cut(s) 530, 1083
FokI GGATG 1 cut(s) 867
Fsp4HI GCNGC 2 cut(s) 530, 1083
FspBI CTAG 2 cut(s) 167, 171
GluI GCNGC 2 cut(s) 530, 1083
GsuI CTGGAG 2 cut(s) 399, 1050
HaeIII GGCC 1 cut(s) 749
HapII CCGG 1 cut(s) 850
Hin1II CATG 6 cut(s) 98, 259, 405, 431, 505, 963
HincII GTYRAC 2 cut(s) 493, 507
HindII GTYRAC 2 cut(s) 493, 507
HinfI GANTC 4 cut(s) 17, 557, 641, 896
HpaII CCGG 1 cut(s) 850
HphI GGTGA 3 cut(s) 164, 558, 680
Hpy166II GTNNAC 6 cut(s) 71, 493, 507, 825, 842, 1037
Hpy188III TCNNGA 5 cut(s) 83, 245, 368, 436, 631
Hpy8I GTNNAC 6 cut(s) 71, 493, 507, 825, 842, 1037
HpyAV CCTTC 4 cut(s) 149, 286, 610, 1087
HpyCH4III ACNGT 4 cut(s) 75, 195, 452, 735
HpyCH4V TGCA 3 cut(s) 43, 529, 825
HpyF3I CTNAG 2 cut(s) 520, 836
Hsp92II CATG 6 cut(s) 98, 259, 405, 431, 505, 963
Kzo9I GATC 5 cut(s) 364, 370, 829, 1000, 1069
LmnI GCTCC 4 cut(s) 127, 418, 791, 1046
Lsp1109I GCAGC 2 cut(s) 541, 1069
LweI GCATC 4 cut(s) 164, 277, 355, 465
MaeI CTAG 2 cut(s) 167, 171
MalI GATC 5 cut(s) 366, 372, 831, 1002, 1071
MboI GATC 5 cut(s) 364, 370, 829, 1000, 1069
MboII GAAGA 7 cut(s) 197, 242, 367, 374, 456, 548, 891
MflI RGATCY 2 cut(s) 364, 1069
MhlI GDGCHC 1 cut(s) 827
MluCI AATT 5 cut(s) 202, 397, 439, 515, 937
MmeI TCCRAC 1 cut(s) 1024
MnlI CCTC 8 cut(s) 396, 403, 678, 681, 796, 873, 976, 1025
MseI TTAA 6 cut(s) 588, 603, 714, 927, 978, 1105
MslI CAYNNNNRTG 3 cut(s) 93, 649, 786
MspI CCGG 1 cut(s) 850
MspR9I CCNGG 6 cut(s) 66, 376, 417, 751, 771, 851
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 5 cut(s) 66, 376, 417, 751, 771
NciI CCSGG 1 cut(s) 851
NdeI CATATG 1 cut(s) 796
NdeII GATC 5 cut(s) 364, 370, 829, 1000, 1069
NlaIII CATG 6 cut(s) 98, 259, 405, 431, 505, 963
NspI RCATGY 2 cut(s) 259, 505
PciI ACATGT 2 cut(s) 255, 501
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 4 cut(s) 17, 557, 641, 896
PkrI GCNGC 2 cut(s) 531, 1084
Ple19I CGATCG 1 cut(s) 832
PscI ACATGT 2 cut(s) 255, 501
Psp6I CCWGG 5 cut(s) 64, 374, 415, 749, 769
PspGI CCWGG 5 cut(s) 64, 374, 415, 749, 769
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 2 cut(s) 364, 1069
PvuI CGATCG 1 cut(s) 832
RsaI GTAC 4 cut(s) 72, 737, 993, 1064
RsaNI GTAC 4 cut(s) 71, 736, 992, 1063
RseI CAYNNNNRTG 3 cut(s) 93, 649, 786
SaqAI TTAA 6 cut(s) 588, 603, 714, 927, 978, 1105
SatI GCNGC 2 cut(s) 530, 1083
Sau3AI GATC 5 cut(s) 364, 370, 829, 1000, 1069
Sau96I GGNCC 1 cut(s) 274
ScrFI CCNGG 6 cut(s) 66, 376, 417, 751, 771, 851
SduI GDGCHC 1 cut(s) 827
SfaNI GCATC 4 cut(s) 164, 277, 355, 465
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 3 cut(s) 93, 649, 786
Sse9I AATT 5 cut(s) 202, 397, 439, 515, 937
SspI AATATT 1 cut(s) 102
SspMI CTAG 2 cut(s) 167, 171
StyD4I CCNGG 6 cut(s) 64, 374, 415, 749, 769, 849
TaaI ACNGT 4 cut(s) 75, 195, 452, 735
TaqI TCGA 1 cut(s) 941
TaqII GACCGA 1 cut(s) 753
TasI AATT 5 cut(s) 202, 397, 439, 515, 937
TatI WGTACW 3 cut(s) 70, 735, 991
TfiI GAWTC 4 cut(s) 17, 557, 641, 896
Tru1I TTAA 6 cut(s) 588, 603, 714, 927, 978, 1105
Tru9I TTAA 6 cut(s) 588, 603, 714, 927, 978, 1105
TseI GCWGC 2 cut(s) 529, 1082
TspDTI ATGAA 2 cut(s) 326, 390
TspGWI ACGGA 3 cut(s) 292, 526, 798
VneI GTGCAC 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 4 cut(s) 397, 439, 515, 937
XceI RCATGY 2 cut(s) 259, 505
XmiI GTMKAC 1 cut(s) 1036
XspI CTAG 2 cut(s) 167, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.