Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004670.1

Orthogroup ID

OG0013739

Physical Location & Seq

Genomic Coordinates Reverse (-)

135611 .. 139959

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgtctggtaaaccgaccaaaattgatctagacaaggacacccgaattgatgtgcgatgccagattcatcaattgactttcagtcctcatacagatgccaaagggattatggatctggtgaagtttctttctcccaagcacgtgatacttgttcatggtgagaagcctaggatggctactctgaaaggaagaattcaatccgaactgggaattcaaagttgctcaaatccaaacttcaagttttctacaggcggctcagaacacgaacaaatccaaactccgatgcattttttttttcgggatgtcccggtcccgacccgccttcaaatcccagataccaccgccgcccaccttgaagatctcaactccaggagtccagaaccgggggccccgcccccagaaccggccggaaaatatccgaaccgacccccggaaatgtctatatcctccctgcacggttcgaagctttcatccctgcctactgctaccaaacttcaccggaagctgcaaccagaccccagatcaccggagccgaaaaatctccaccgaaacctgcctagaaccatccgaaccggccaccaaaaaagactacaaccgaaccggcagaaagagagaaaaaaaaaaaggaggcagaagccgagcccaagccgcagcccaagcagagcccaagccactgccctgaagcccagcaacgcggcccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta-Casp Lactamase_B_6 RMMBL zf-RING_2

Protein Analysis

234

Amino Acids

26.27

Weight (kDa)

10.57

Isoelectric Point (pI)

64.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMMBL	PF07521	15 - 72	1.4e-15	Zn-dependent metallo-hydrolase RNA specificity domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013739)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G065700_v2.0.a1 Prupe.3G065900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0319151 RchiOBHm_Chr1g0374451 RchiOBHm_Chr2g0101461 RchiOBHm_Chr6g0263901 RchiOBHm_Chr6g0304581
rosa_multiflora	Rmu_sc0004670.1_g000026 Rmu_sc0012551.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319370 Rroxscaffold_6G00425380
rosa_rugosa	Rorug02G0653500 Rorug02G0653500 Rorug02G0653500
rosa_samantha	Rh2CG153100 Rh3CG346600 Rh4BG328800 Rh5DG226000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	561
AccII	CGCG	1 cut(s)	695
AciI	CCGC	7 cut(s)	252, 319, 342, 345, 392, 649, 695
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	2 cut(s)	405, 574
AcsI	RAATTY	2 cut(s)	192, 210
AcuI	CTGAAG	1 cut(s)	701
AcvI	CACGTG	1 cut(s)	142
AfiI	CCNNNNNNNGG	3 cut(s)	383, 403, 430
AgsI	TTSAA	5 cut(s)	197, 215, 238, 326, 356
AhdI	GACNNNNNGTC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	2 cut(s)	466, 505
AluI	AGCT	2 cut(s)	466, 505
AlwI	GGATC	1 cut(s)	120
AoxI	GGCC	4 cut(s)	387, 405, 574, 696
ApaI	GGGCCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	505, 651
ApoI	RAATTY	2 cut(s)	192, 210
AspA2I	CCTAGG	1 cut(s)	167
AspS9I	GGNCC	4 cut(s)	310, 387, 388, 697
AsuC2I	CCSGG	3 cut(s)	308, 384, 431
AsuHPI	GGTGA	4 cut(s)	130, 170, 488, 516
AsuII	TTCGAA	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	310
AvrII	CCTAGG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	391
BanII	GRGCYC	3 cut(s)	391, 644, 667
BbrPI	CACGTG	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	492, 663
BccI	CCATC	2 cut(s)	166, 572
BciT130I	CCWGG	1 cut(s)	370
BcnI	CCSGG	3 cut(s)	308, 384, 431
BfaI	CTAG	3 cut(s)	29, 168, 558
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	561
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	6 cut(s)	253, 345, 506, 649, 652, 696
BlnI	CCTAGG	1 cut(s)	167
BlsI	GCNGC	6 cut(s)	254, 346, 507, 650, 653, 697
Bme1390I	CCNGG	4 cut(s)	308, 370, 384, 431
Bme18I	GGWCC	1 cut(s)	310
BmeRI	GACNNNNNGTC	1 cut(s)	81
BmgT120I	GGNCC	4 cut(s)	310, 387, 388, 697
BmiI	GGNNCC	5 cut(s)	312, 388, 389, 390, 531
BmrFI	CCNGG	4 cut(s)	308, 370, 384, 431
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	3 cut(s)	47, 85, 273
BmuI	ACTGGG	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	461
BpuMI	CCSGG	3 cut(s)	308, 384, 431
BsaAI	YACGTR	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	167, 383, 429
BsaWI	WCCGGW	2 cut(s)	498, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 403, 430
Bse118I	RCCGGY	3 cut(s)	403, 572, 600
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	3 cut(s)	167, 383, 429
BseGI	GGATG	4 cut(s)	177, 307, 470, 564
BseLI	CCNNNNNNNGG	3 cut(s)	383, 403, 430
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	391
BseX3I	CGGCCG	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	492, 663
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	695
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	4 cut(s)	389, 407, 576, 698
BsiEI	CGRYCG	1 cut(s)	408
BsiSI	CCGG	9 cut(s)	308, 383, 404, 408, 431, 499, 527, 573, 601
BslFI	GGGAC	2 cut(s)	290, 296
BslI	CCNNNNNNNGG	3 cut(s)	383, 403, 430
BsmFI	GGGAC	2 cut(s)	290, 296
BsnI	GGCC	4 cut(s)	389, 407, 576, 698
Bsp119I	TTCGAA	1 cut(s)	461
Bsp120I	GGGCCC	1 cut(s)	387
Bsp1286I	GDGCHC	3 cut(s)	391, 644, 667
Bsp143I	GATC	4 cut(s)	25, 112, 358, 521
BspACI	CCGC	7 cut(s)	252, 319, 342, 345, 392, 649, 695
BspANI	GGCC	4 cut(s)	389, 407, 576, 698
BspCNI	CTCAG	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	695
BspLI	GGNNCC	5 cut(s)	312, 388, 389, 390, 531
BspMI	ACCTGC	1 cut(s)	561
BspPI	GGATC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	461
BsrFI	RCCGGY	3 cut(s)	403, 572, 600
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	3 cut(s)	403, 572, 600
BssECI	CCNNGG	3 cut(s)	167, 383, 429
BssMI	GATC	4 cut(s)	25, 112, 358, 521
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	142
BstBI	TTCGAA	1 cut(s)	461
BstDEI	CTNAG	1 cut(s)	256
BstF5I	GGATG	4 cut(s)	177, 307, 470, 564
BstFNI	CGCG	1 cut(s)	695
BstKTI	GATC	4 cut(s)	28, 115, 361, 524
BstMBI	GATC	4 cut(s)	25, 112, 358, 521
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	648, 657
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	4 cut(s)	306, 368, 382, 429
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	1 cut(s)	695
BstV1I	GCAGC	2 cut(s)	492, 663
BstX2I	RGATCY	2 cut(s)	112, 358
BstYI	RGATCY	2 cut(s)	112, 358
BstZI	CGGCCG	1 cut(s)	405
BsuRI	GGCC	4 cut(s)	389, 407, 576, 698
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	177, 307, 470, 564
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	1 cut(s)	672
BveI	ACCTGC	1 cut(s)	561
Cfr10I	RCCGGY	3 cut(s)	403, 572, 600
Cfr13I	GGNCC	4 cut(s)	310, 387, 388, 697
CviAII	CATG	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	4 cut(s)	27, 114, 360, 523
DpnII	GATC	4 cut(s)	25, 112, 358, 521
DriI	GACNNNNNGTC	1 cut(s)	81
EaeI	YGGCCR	2 cut(s)	405, 574
EagI	CGGCCG	1 cut(s)	405
Eam1105I	GACNNNNNGTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	3 cut(s)	391, 644, 667
Eco47I	GGWCC	1 cut(s)	310
Eco52I	CGGCCG	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	701
Eco72I	CACGTG	1 cut(s)	142
EcoO109I	RGGNCCY	2 cut(s)	387, 388
EcoRI	GAATTC	2 cut(s)	192, 210
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	3 cut(s)	391, 644, 667
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	158
FaiI	YATR	4 cut(s)	90, 110, 156, 443
FaqI	GGGAC	2 cut(s)	290, 296
FatI	CATG	1 cut(s)	154
FauI	CCCGC	2 cut(s)	326, 399
Fnu4HI	GCNGC	6 cut(s)	253, 345, 506, 649, 652, 696
FokI	GGATG	4 cut(s)	184, 314, 457, 551
FriOI	GRGCYC	3 cut(s)	391, 644, 667
Fsp4HI	GCNGC	6 cut(s)	253, 345, 506, 649, 652, 696
FspBI	CTAG	3 cut(s)	29, 168, 558
GluI	GCNGC	6 cut(s)	253, 345, 506, 649, 652, 696
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	4 cut(s)	389, 407, 576, 698
HapII	CCGG	9 cut(s)	308, 383, 404, 408, 431, 499, 527, 573, 601
Hin1II	CATG	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	2 cut(s)	64, 373
HpaII	CCGG	9 cut(s)	308, 383, 404, 408, 431, 499, 527, 573, 601
HphI	GGTGA	4 cut(s)	130, 170, 488, 516
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	6 cut(s)	183, 202, 259, 282, 420, 569
Hpy188III	TCNNGA	4 cut(s)	29, 299, 313, 377
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	286, 454, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	648, 657
HpyF3I	CTNAG	1 cut(s)	256
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	158
Kzo9I	GATC	4 cut(s)	25, 112, 358, 521
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	2 cut(s)	492, 663
LweI	GCATC	3 cut(s)	47, 85, 273
MaeI	CTAG	3 cut(s)	29, 168, 558
MaeII	ACGT	1 cut(s)	141
MalI	GATC	4 cut(s)	27, 114, 360, 523
MboI	GATC	4 cut(s)	25, 112, 358, 521
MboII	GAAGA	2 cut(s)	201, 368
MfeI	CAATTG	1 cut(s)	71
MflI	RGATCY	2 cut(s)	112, 358
MhlI	GDGCHC	3 cut(s)	391, 644, 667
MluCI	AATT	5 cut(s)	21, 45, 71, 192, 210
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	3 cut(s)	96, 457, 621
Mph1103I	ATGCAT	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	9 cut(s)	308, 383, 404, 408, 431, 499, 527, 573, 601
MspR9I	CCNGG	4 cut(s)	308, 370, 384, 431
MunI	CAATTG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	648, 657
NciI	CCSGG	3 cut(s)	308, 384, 431
NdeII	GATC	4 cut(s)	25, 112, 358, 521
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	5 cut(s)	312, 388, 389, 390, 531
NmeAIII	GCCGAG	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	288
NspV	TTCGAA	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	64
PfoI	TCCNGGA	1 cut(s)	368
PkrI	GCNGC	6 cut(s)	254, 346, 507, 650, 653, 697
PleI	GAGTC	1 cut(s)	381
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	381
Ppu21I	YACGTR	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	368
PspCI	CACGTG	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	5 cut(s)	312, 388, 389, 390, 531
PspOMI	GGGCCC	1 cut(s)	387
PspPI	GGNCC	4 cut(s)	310, 387, 388, 697
PsuI	RGATCY	2 cut(s)	112, 358
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	6 cut(s)	253, 345, 506, 649, 652, 696
Sau3AI	GATC	4 cut(s)	25, 112, 358, 521
Sau96I	GGNCC	4 cut(s)	310, 387, 388, 697
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	4 cut(s)	308, 370, 384, 431
SduI	GDGCHC	3 cut(s)	391, 644, 667
SetI	ASST	5 cut(s)	144, 354, 468, 507, 555
SfaNI	GCATC	3 cut(s)	47, 85, 273
SfcI	CTRYAG	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	5 cut(s)	21, 45, 71, 192, 210
SsiI	CCGC	7 cut(s)	252, 319, 342, 345, 392, 649, 695
SspMI	CTAG	3 cut(s)	29, 168, 558
StyD4I	CCNGG	4 cut(s)	306, 368, 382, 429
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	461
TasI	AATT	5 cut(s)	21, 45, 71, 192, 210
TauI	GCSGC	4 cut(s)	255, 347, 651, 698
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	1 cut(s)	679
TseI	GCWGC	2 cut(s)	505, 651
TspDTI	ATGAA	3 cut(s)	56, 143, 459
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	2 cut(s)	192, 210
XbaI	TCTAGA	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	3 cut(s)	29, 168, 558
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.