Rmu_sc0004940.1_g000004

START domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004940.1
OG0016311
Physical Location & Seq
Reverse (-)
37081 .. 38665
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004940.1_g000004.1.cds

Sequence Viewer

Length: 975 bp
atgatagccgaattactattgacggtagtctgttttgtagcagcagcactgataccacttgtgagcttaagccttatcaagggatgttcttggacatggtcgtggacctcatgctcatggtcatggtcgagttcatggcgcctaccatttgtgactctctccctccatgattctgctctgggaagactgctctcttgcttcaacagccacagacagagagtactatccgagttagttgacgactcttatcctcctgctgatcaggaacaagaaccttgtgaagtgaatgaagaagatttgaaagtattggtctcccatattgaggagactgatggcggtccaccttggaatctcatgatggagcagtctattccttccttgacatacaaagcttggtatcgtgatccaccgttaggcccgacacagtaccgtactaaaacagttttcgaaaatgtttcaccagaggtattgagggatttcttctgggatgatgaattcagacccaggtgggataagacgctcattcacaccaaggttctaggcgtttgcctccaaactggtaccatgattgttcattggattagaaagctaccactactctgctgcaatcgagaatatatcataatccgtcgcatttttgaatctgcatcagggaatgcagatcagcaaatgggatcagaagtgcttctatttcactacgaagacatacgtctcccaagagaggttgtcaaaatgggcgtcagggcgggaatgtggaacatggtaaagaaactacatttaggagttcaggtttacagtatggaaaaagcaaatgatgaatctctttcataccatgcaattatggcacacataactacaaagcttccggcttcaccatccacaatcatgtatcacatcccagaagttgaagcagatgagaatgcatgccagagccaaaacccacacgaacaagtaacagagttcatagttcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

324

Amino Acids

37.24

Weight (kDa)

5.39

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016311)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g22000 FvH4_4g22000 FvH4_4g22000
malus_domestica MD13G1135100.v1.1
prunus_persica Prupe.1G210200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0428201
rosa_laevigata RLG00000007170
rosa_multiflora Rmu_sc0004940.1_g000004 Rmu_sc0009599.1_g000003
rosa_rugosa Rorug04G0223600
rosa_samantha Rh4AG280800 Rh4BG286300 Rh4CG302000 Rh4DG283300
rosa_wichuraiana Rw4G024390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 560
AccB1I GGYRCC 2 cut(s) 138, 560
AciI CCGC 2 cut(s) 336, 746
AclWI GGATC 2 cut(s) 398, 682
AcsI RAATTY 1 cut(s) 494
AcyI GRCGYC 2 cut(s) 139, 738
AfaI GTAC 4 cut(s) 222, 428, 433, 562
AfiI CCNNNNNNNGG 4 cut(s) 79, 322, 413, 721
AflII CTTAAG 1 cut(s) 67
AgsI TTSAA 4 cut(s) 202, 301, 641, 908
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 4 cut(s) 66, 392, 589, 862
AluI AGCT 4 cut(s) 66, 392, 589, 862
Alw26I GTCTC 3 cut(s) 316, 320, 716
AlwI GGATC 2 cut(s) 398, 682
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 3 cut(s) 41, 44, 603
ApoI RAATTY 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 723, 755
Asp700I GAANNNNTTC 1 cut(s) 684
Asp718I GGTACC 1 cut(s) 560
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 3 cut(s) 105, 338, 416
AsuHPI GGTGA 2 cut(s) 450, 864
AsuII TTCGAA 1 cut(s) 447
AvaII GGWCC 2 cut(s) 105, 338
BanI GGYRCC 2 cut(s) 138, 560
BbsI GAAGAC 2 cut(s) 190, 708
BbvI GCAGC 3 cut(s) 53, 56, 590
BccI CCATC 3 cut(s) 326, 352, 883
BciT130I CCWGG 1 cut(s) 505
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 3 cut(s) 316, 320, 716
BfaI CTAG 1 cut(s) 539
BfoI RGCGCY 1 cut(s) 142
BfrI CTTAAG 1 cut(s) 67
BisI GCNGC 3 cut(s) 42, 45, 604
BlsI GCNGC 3 cut(s) 43, 46, 605
BmcAI AGTACT 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 2 cut(s) 105, 338
BmgT120I GGNCC 3 cut(s) 105, 338, 416
BmiI GGNNCC 2 cut(s) 140, 562
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 1 cut(s) 656
BoxI GACNNNNGTC 2 cut(s) 26, 708
BpiI GAAGAC 2 cut(s) 190, 708
Bpu14I TTCGAA 1 cut(s) 447
BsaHI GRCGYC 2 cut(s) 139, 738
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 3 cut(s) 344, 503, 531
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 79, 322, 413, 721
Bse1I ACTGG 1 cut(s) 562
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 3 cut(s) 344, 503, 531
BseGI GGATG 4 cut(s) 89, 493, 875, 894
BseLI CCNNNNNNNGG 4 cut(s) 79, 322, 413, 721
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 3 cut(s) 53, 56, 590
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 2 cut(s) 138, 560
BsiSI CCGG 1 cut(s) 866
BslI CCNNNNNNNGG 4 cut(s) 79, 322, 413, 721
BsmAI GTCTC 3 cut(s) 316, 320, 716
BsmBI CGTCTC 1 cut(s) 716
BsmI GAATGC 2 cut(s) 661, 925
BsnI GGCC 1 cut(s) 417
Bso31I GGTCTC 1 cut(s) 316
Bsp119I TTCGAA 1 cut(s) 447
Bsp143I GATC 4 cut(s) 259, 403, 661, 674
BspACI CCGC 2 cut(s) 336, 746
BspANI GGCC 1 cut(s) 417
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 140, 562
BspPI GGATC 2 cut(s) 398, 682
BspT104I TTCGAA 1 cut(s) 447
BspT107I GGYRCC 2 cut(s) 138, 560
BspTI CTTAAG 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 316
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 3 cut(s) 344, 503, 531
BssMI GATC 4 cut(s) 259, 403, 661, 674
BssNI GRCGYC 2 cut(s) 139, 738
BssT1I CCWWGG 2 cut(s) 344, 531
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 6 cut(s) 25, 411, 426, 431, 442, 797
BstACI GRCGYC 2 cut(s) 139, 738
BstAFI CTTAAG 1 cut(s) 67
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 925
BstENI CCTNNNNNAGG 1 cut(s) 77
BstF5I GGATG 4 cut(s) 89, 493, 875, 894
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 4 cut(s) 262, 406, 664, 677
BstMAI GTCTC 3 cut(s) 316, 320, 716
BstMBI GATC 4 cut(s) 259, 403, 661, 674
BstMWI GCNNNNNNNGC 2 cut(s) 204, 842
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 927
BstPAI GACNNNNGTC 2 cut(s) 26, 708
BstSCI CCNGG 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 53, 56, 590
BstV2I GAAGAC 2 cut(s) 190, 708
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 4 cut(s) 89, 493, 875, 894
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 925
CciI TCATGA 1 cut(s) 354
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 3 cut(s) 105, 338, 416
CseI GACGC 2 cut(s) 526, 727
Csp6I GTAC 4 cut(s) 221, 427, 432, 561
CviQI GTAC 4 cut(s) 221, 427, 432, 561
DinI GGCGCC 1 cut(s) 140
DpnI GATC 4 cut(s) 261, 405, 663, 676
DpnII GATC 4 cut(s) 259, 403, 661, 674
Eco130I CCWWGG 2 cut(s) 344, 531
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 105, 338
EcoNI CCTNNNNNAGG 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 344, 531
EcoT22I ATGCAT 1 cut(s) 925
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
ErhI CCWWGG 2 cut(s) 344, 531
Esp3I CGTCTC 1 cut(s) 716
FauI CCCGC 1 cut(s) 739
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 42, 45, 604
FokI GGATG 4 cut(s) 96, 500, 862, 881
Fsp4HI GCNGC 3 cut(s) 42, 45, 604
FspBI CTAG 1 cut(s) 539
GlaI GCGC 1 cut(s) 140
GluI GCNGC 3 cut(s) 42, 45, 604
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 417
HapII CCGG 1 cut(s) 866
HgaI GACGC 2 cut(s) 526, 727
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 139, 738
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 390, 860
HinfI GANTC 6 cut(s) 154, 170, 242, 349, 641, 818
HpaII CCGG 1 cut(s) 866
HphI GGTGA 2 cut(s) 450, 864
Hpy166II GTNNAC 4 cut(s) 105, 238, 341, 793
Hpy188I TCNGA 3 cut(s) 229, 500, 679
Hpy188III TCNNGA 4 cut(s) 263, 355, 401, 611
Hpy8I GTNNAC 4 cut(s) 105, 238, 341, 793
Hpy99I CGWCG 1 cut(s) 633
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 6 cut(s) 25, 411, 426, 431, 442, 797
HpyCH4IV ACGT 1 cut(s) 709
HpyCH4V TGCA 5 cut(s) 606, 647, 659, 836, 923
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 842
HpySE526I ACGT 1 cut(s) 709
Hsp92I GRCGYC 2 cut(s) 139, 738
HspAI GCGC 1 cut(s) 139
KasI GGCGCC 1 cut(s) 138
KpnI GGTACC 1 cut(s) 564
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 4 cut(s) 259, 403, 661, 674
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 3 cut(s) 53, 56, 590
LweI GCATC 1 cut(s) 656
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 2 cut(s) 151, 952
MalI GATC 4 cut(s) 261, 405, 663, 676
MboI GATC 4 cut(s) 259, 403, 661, 674
MboII GAAGA 5 cut(s) 195, 302, 305, 472, 713
MluCI AATT 3 cut(s) 11, 494, 837
Mly113I GGCGCC 1 cut(s) 139
MlyI GAGTC 2 cut(s) 148, 236
MnlI CCTC 8 cut(s) 118, 173, 261, 316, 457, 465, 560, 715
Mph1103I ATGCAT 1 cut(s) 925
MroXI GAANNNNTTC 1 cut(s) 684
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 4 cut(s) 100, 115, 121, 884
MspCI CTTAAG 1 cut(s) 67
MspI CCGG 1 cut(s) 866
MspR9I CCNGG 1 cut(s) 505
Mva1269I GAATGC 2 cut(s) 661, 925
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 2 cut(s) 204, 842
NarI GGCGCC 1 cut(s) 139
NdeII GATC 4 cut(s) 259, 403, 661, 674
NlaIV GGNNCC 2 cut(s) 140, 562
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 925
NspI RCATGY 1 cut(s) 927
NspV TTCGAA 1 cut(s) 447
PaeI GCATGC 1 cut(s) 927
PagI TCATGA 1 cut(s) 354
PctI GAATGC 2 cut(s) 661, 925
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 4 cut(s) 170, 349, 641, 818
PflFI GACNNNGTC 1 cut(s) 97
PkrI GCNGC 3 cut(s) 43, 46, 605
PleI GAGTC 2 cut(s) 148, 236
PluTI GGCGCC 1 cut(s) 142
PpsI GAGTC 2 cut(s) 148, 236
PshAI GACNNNNGTC 2 cut(s) 26, 708
Psp6I CCWGG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 2 cut(s) 140, 562
PspPI GGNCC 3 cut(s) 105, 338, 416
PsyI GACNNNGTC 1 cut(s) 97
RsaI GTAC 4 cut(s) 222, 428, 433, 562
RsaNI GTAC 4 cut(s) 221, 427, 432, 561
RseI CAYNNNNRTG 4 cut(s) 100, 115, 121, 884
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 42, 45, 604
Sau3AI GATC 4 cut(s) 259, 403, 661, 674
Sau96I GGNCC 3 cut(s) 105, 338, 416
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 2 cut(s) 148, 236
ScrFI CCNGG 1 cut(s) 505
SfaNI GCATC 1 cut(s) 656
SfoI GGCGCC 1 cut(s) 140
SfuI TTCGAA 1 cut(s) 447
SinI GGWCC 2 cut(s) 105, 338
SmiMI CAYNNNNRTG 4 cut(s) 100, 115, 121, 884
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SphI GCATGC 1 cut(s) 927
Sse9I AATT 3 cut(s) 11, 494, 837
SsiI CCGC 2 cut(s) 336, 746
SspDI GGCGCC 1 cut(s) 138
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 2 cut(s) 344, 531
TaaI ACNGT 6 cut(s) 25, 411, 426, 431, 442, 797
TaiI ACGT 1 cut(s) 712
TaqI TCGA 3 cut(s) 128, 447, 610
TasI AATT 3 cut(s) 11, 494, 837
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 4 cut(s) 170, 349, 641, 818
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 3 cut(s) 41, 44, 603
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 7 cut(s) 123, 303, 507, 563, 816, 831, 952
TspGWI ACGGA 1 cut(s) 617
TspRI CASTG 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 97
Vha464I CTTAAG 1 cut(s) 67
VpaK11BI GGWCC 2 cut(s) 105, 338
XagI CCTNNNNNAGG 1 cut(s) 77
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 927
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 1 cut(s) 539
ZrmI AGTACT 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.