Rmu_sc0005072.1_g000008

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005072.1
OG0018511
Physical Location & Seq
Forward (+)
35608 .. 37824
2217 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
atggttttcttcaaatgcaccgccgctgctgaaattaggattttcttgaaatgcacctctgctgctaaatctgagattagggttccggtactgccgcgtagagggagaaggagaggaacacagcagtgtgagaaggaccgtgatgaagcagatgacagcagccgaggagaggaagaaagcaagaaagaagaggttgaagtcagacgggcaacagagacgccaacacaagtgatcatttggactaatcaatcaactccattctggaaaagtgggccatgggataaatcaaagttcatcggcctcctagatatggacgatcgatatcttagtggatttaaactagatgaaaatgtagaacaaggaacacagtatttctcttatgaattatttggcactcttgcagcatatctagaagtctcttttcagggaaagttaaagcttatgtatgcaccaaatggtagagactggtcactctactgcgatacacataagaacccatgtgacatctatggagcatgtgggccttatggggtctgcaacatttctgaatctcaatcggtgactgtttga

Protein Analysis

189

Amino Acids

21.56

Weight (kDa)

5.62

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 88 - 185 3.7e-18 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018511)

Species Orthologous Gene IDs
malus_domestica MD05G1330300.v1.1
rosa_chinensis RchiOBHm_Chr1g0319271
rosa_laevigata RLG00000030496 RLG00000031312
rosa_multiflora Rmu_co7967050.1_g000001 Rmu_sc0005072.1_g000008 Rmu_sc0018837.1_g000001 Rmu_sc0018838.1_g000001
rosa_rugosa Rorug03G0216400
rosa_samantha Rh1BG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 97
AciI CCGC 3 cut(s) 21, 24, 95
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 3 cut(s) 101, 169, 310
AgsI TTSAA 3 cut(s) 13, 49, 197
AleI CACNNNNGTG 1 cut(s) 124
AluBI AGCT 1 cut(s) 439
AluI AGCT 1 cut(s) 439
Alw26I GTCTC 3 cut(s) 209, 421, 456
AoxI GGCC 3 cut(s) 272, 298, 521
ApeKI GCWGC 4 cut(s) 26, 62, 159, 401
AspS9I GGNCC 3 cut(s) 136, 272, 521
AvaII GGWCC 1 cut(s) 136
BbvI GCAGC 4 cut(s) 13, 49, 171, 413
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 209, 421, 456
BfaI CTAG 3 cut(s) 305, 341, 410
BisI GCNGC 6 cut(s) 24, 27, 63, 95, 160, 402
BlsI GCNGC 6 cut(s) 25, 28, 64, 96, 161, 403
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 3 cut(s) 136, 272, 521
BmiI GGNNCC 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 163, 275
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 169, 310
Bse1I ACTGG 1 cut(s) 470
Bse8I GATNNNNATC 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 163, 275
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 3 cut(s) 101, 169, 310
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 4 cut(s) 13, 49, 171, 413
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 274, 300, 523
BshVI ATCGAT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 101, 169, 310
BsmAI GTCTC 3 cut(s) 209, 421, 456
BsmBI CGTCTC 1 cut(s) 209
BsnI GGCC 3 cut(s) 274, 300, 523
Bsp143I GATC 2 cut(s) 231, 316
Bsp19I CCATGG 1 cut(s) 275
BspACI CCGC 3 cut(s) 21, 24, 95
BspANI GGCC 3 cut(s) 274, 300, 523
BspCNI CTCAG 1 cut(s) 64
BspDI ATCGAT 1 cut(s) 319
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 163, 275
BssMI GATC 2 cut(s) 231, 316
BssNI GRCGYC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 275
Bst4CI ACNGT 3 cut(s) 140, 369, 565
Bst6I CTCTTC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 72, 326
BstDSI CCRYGG 1 cut(s) 275
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 234, 319
BstMAI GTCTC 3 cut(s) 209, 421, 456
BstMBI GATC 2 cut(s) 231, 316
BstMCI CGRYCG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 519
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 4 cut(s) 13, 49, 171, 413
Bsu15I ATCGAT 1 cut(s) 319
BsuRI GGCC 3 cut(s) 274, 300, 523
BsuTUI ATCGAT 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 136, 272, 521
ClaI ATCGAT 1 cut(s) 319
CseI GACGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 89
CviAII CATG 3 cut(s) 276, 498, 516
CviJI RGCY 5 cut(s) 162, 274, 300, 439, 523
CviKI_1 RGCY 5 cut(s) 162, 274, 300, 439, 523
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 72, 326
DpnI GATC 2 cut(s) 233, 318
DpnII GATC 2 cut(s) 231, 316
DraI TTTAAA 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 275
Eco32I GATATC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 136
EcoRV GATATC 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 3 cut(s) 279, 501, 519
FatI CATG 3 cut(s) 275, 497, 515
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 6 cut(s) 24, 27, 63, 95, 160, 402
Fsp4HI GCNGC 6 cut(s) 24, 27, 63, 95, 160, 402
FspBI CTAG 3 cut(s) 305, 341, 410
GluI GCNGC 6 cut(s) 24, 27, 63, 95, 160, 402
HaeIII GGCC 3 cut(s) 274, 300, 523
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 3 cut(s) 279, 501, 519
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 548
HpaII CCGG 1 cut(s) 86
Hpy188I TCNGA 3 cut(s) 73, 203, 547
Hpy188III TCNNGA 3 cut(s) 46, 262, 410
HpyAV CCTTC 2 cut(s) 102, 127
HpyCH4III ACNGT 3 cut(s) 140, 369, 565
HpyCH4V TGCA 5 cut(s) 18, 54, 401, 449, 537
HpyF3I CTNAG 2 cut(s) 72, 326
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 3 cut(s) 279, 501, 519
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 231, 316
LmnI GCTCC 1 cut(s) 512
LpnPI CCDG 4 cut(s) 99, 247, 410, 451
Lsp1109I GCAGC 4 cut(s) 13, 49, 171, 413
MaeI CTAG 3 cut(s) 305, 341, 410
MaeIII GTNAC 3 cut(s) 468, 500, 559
MalI GATC 2 cut(s) 233, 318
MboI GATC 2 cut(s) 231, 316
MboII GAAGA 2 cut(s) 185, 200
MluCI AATT 2 cut(s) 33, 383
MnlI CCTC 7 cut(s) 67, 95, 107, 158, 163, 184, 311
MseI TTAA 2 cut(s) 336, 434
MslI CAYNNNNRTG 1 cut(s) 124
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 275
NdeII GATC 2 cut(s) 231, 316
NlaIII CATG 3 cut(s) 279, 501, 519
NlaIV GGNNCC 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 3 cut(s) 468, 500, 559
NspI RCATGY 1 cut(s) 519
OliI CACNNNNGTG 1 cut(s) 124
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 6 cut(s) 25, 28, 64, 96, 161, 403
Ple19I CGATCG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 3 cut(s) 136, 272, 521
PvuI CGATCG 1 cut(s) 319
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 124
SaqAI TTAA 2 cut(s) 336, 434
SatI GCNGC 6 cut(s) 24, 27, 63, 95, 160, 402
Sau3AI GATC 2 cut(s) 231, 316
Sau96I GGNCC 3 cut(s) 136, 272, 521
SetI ASST 3 cut(s) 59, 195, 441
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 124
Sse9I AATT 2 cut(s) 33, 383
SsiI CCGC 3 cut(s) 21, 24, 95
SspMI CTAG 3 cut(s) 305, 341, 410
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 3 cut(s) 140, 369, 565
TaqI TCGA 1 cut(s) 319
TasI AATT 2 cut(s) 33, 383
TauI GCSGC 2 cut(s) 26, 97
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 2 cut(s) 336, 434
Tru9I TTAA 2 cut(s) 336, 434
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 3 cut(s) 468, 500, 559
TseI GCWGC 4 cut(s) 26, 62, 159, 401
Tsp45I GTSAC 3 cut(s) 468, 500, 559
TspDTI ATGAA 4 cut(s) 159, 283, 360, 396
TspRI CASTG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 136
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 1 cut(s) 519
XspI CTAG 3 cut(s) 305, 341, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.