Rmu_sc0005145.1_g000010

Monoglyceride

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005145.1
OG0012735
Physical Location & Seq
Forward (+)
33062 .. 36952
3891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005145.1_g000010.1.cds

Sequence Viewer

Length: 636 bp
atgaagattcttgtgaagagatatgttgaatgtcaagcctggtttctgatgcttattcttcttggtttttattgtgaatggcaacaacttgtgcctgaccttgagcaagttcaagtctctctcaacagccgaatcagatctcaaagatggaggaggctattgatagagaagctttcaagtcatgagctgcttagccaaaagaggtcgcaggaatggaaacccagaagcagtttcaaatcaacctcgaagttggttccacaaaagaatctggctgaggcagcctttaaagacttgaagaaacgggaaatgacggcctataatgttgttgcttacaaggataagccacgcctgcagactgctgtagaaatgctccggacaactcaagagatagaaagtcgattagaagaagtctctcttccattattaatccttcacggagaagctgatactgtgaccgatccatctgtgagtagggcgctttatgagaaagcaagcagttccgacaagaagctaatcctttacgaggatgcatatcattcccttctggaaggtgagccggatgaaatgatagttcaagttttcaatgacatcatatcatggctcaacgaacacagcacaaaatttacagccagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

211

Amino Acids

24.72

Weight (kDa)

8.43

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 372
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 523
AgsI TTSAA 7 cut(s) 29, 113, 177, 235, 295, 575, 583
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 4 cut(s) 172, 187, 443, 511
AluI AGCT 4 cut(s) 172, 187, 443, 511
Alw26I GTCTC 2 cut(s) 121, 415
AlwI GGATC 1 cut(s) 452
Aor13HI TCCGGA 1 cut(s) 372
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 2 cut(s) 187, 278
ApoI RAATTY 1 cut(s) 620
AseI ATTAAT 1 cut(s) 425
AspLEI GCGC 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 563
BbvCI CCTCAGC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 174, 290
BccI CCATC 2 cut(s) 141, 469
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 121, 415
BfmI CTRYAG 2 cut(s) 350, 360
BfoI RGCGCY 1 cut(s) 479
BglII AGATCT 1 cut(s) 137
BisI GCNGC 2 cut(s) 188, 279
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 2 cut(s) 189, 280
Bme1390I CCNGG 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 2 cut(s) 39, 517
Bpu10I CCTNAGC 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 122, 366
BsaBI GATNNNNATC 1 cut(s) 531
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 531
BseAI TCCGGA 1 cut(s) 372
BseBI CCWGG 1 cut(s) 40
BseGI GGATG 2 cut(s) 532, 565
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 174, 290
BshFI GGCC 1 cut(s) 314
BsiSI CCGG 2 cut(s) 373, 557
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 2 cut(s) 121, 415
BsnI GGCC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 137, 457
Bsp1720I GCTNAGC 1 cut(s) 191
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 265
BspEI TCCGGA 1 cut(s) 372
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 354
BspPI GGATC 1 cut(s) 452
BssMI GATC 2 cut(s) 137, 457
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 451
Bst6I CTCTTC 2 cut(s) 11, 420
BstC8I GCNNGC 2 cut(s) 350, 493
BstDEI CTNAG 2 cut(s) 191, 273
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 2 cut(s) 532, 565
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 2 cut(s) 140, 460
BstMAI GTCTC 2 cut(s) 121, 415
BstMBI GATC 2 cut(s) 137, 457
BstMWI GCNNNNNNNGC 2 cut(s) 278, 349
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 2 cut(s) 350, 360
BstV1I GCAGC 2 cut(s) 174, 290
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 2 cut(s) 532, 565
Cac8I GCNNGC 2 cut(s) 350, 493
CciI TCATGA 1 cut(s) 181
CfoI GCGC 1 cut(s) 478
CviAII CATG 2 cut(s) 182, 597
DdeI CTNAG 2 cut(s) 191, 273
DpnI GATC 2 cut(s) 139, 459
DpnII GATC 2 cut(s) 137, 457
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 11, 420
EarI CTCTTC 2 cut(s) 11, 420
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 532
FaeI CATG 2 cut(s) 185, 600
FaiI YATR 7 cut(s) 24, 183, 318, 483, 532, 593, 598
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 2 cut(s) 181, 596
Fnu4HI GCNGC 2 cut(s) 188, 279
FokI GGATG 2 cut(s) 539, 572
Fsp4HI GCNGC 2 cut(s) 188, 279
GlaI GCGC 1 cut(s) 477
GluI GCNGC 2 cut(s) 188, 279
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 1 cut(s) 314
HapII CCGG 2 cut(s) 373, 557
HhaI GCGC 1 cut(s) 478
Hin1II CATG 2 cut(s) 185, 600
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 3 cut(s) 7, 132, 265
HpaII CCGG 2 cut(s) 373, 557
HphI GGTGA 1 cut(s) 563
Hpy188I TCNGA 3 cut(s) 48, 137, 502
Hpy188III TCNNGA 4 cut(s) 182, 373, 383, 545
HpyAV CCTTC 3 cut(s) 440, 542, 551
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4V TGCA 2 cut(s) 352, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 349
HpyF3I CTNAG 2 cut(s) 191, 273
Hsp92II CATG 2 cut(s) 185, 600
HspAI GCGC 1 cut(s) 476
Kpn2I TCCGGA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 137, 457
LmnI GCTCC 1 cut(s) 375
Lsp1109I GCAGC 2 cut(s) 174, 290
LweI GCATC 2 cut(s) 39, 517
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 139, 459
MboI GATC 2 cut(s) 137, 457
MboII GAAGA 6 cut(s) 16, 28, 50, 307, 407, 416
MflI RGATCY 1 cut(s) 137
MluCI AATT 1 cut(s) 620
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 6 cut(s) 144, 147, 195, 253, 268, 517
Mph1103I ATGCAT 1 cut(s) 532
MroI TCCGGA 1 cut(s) 372
MseI TTAA 2 cut(s) 285, 425
MspI CCGG 2 cut(s) 373, 557
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 278, 349
NdeII GATC 2 cut(s) 137, 457
NlaIII CATG 2 cut(s) 185, 600
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 532
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 3 cut(s) 7, 132, 265
PkrI GCNGC 2 cut(s) 189, 280
PshBI ATTAAT 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 255
PstI CTGCAG 1 cut(s) 354
PsuI RGATCY 1 cut(s) 137
SaqAI TTAA 2 cut(s) 285, 425
SatI GCNGC 2 cut(s) 188, 279
Sau3AI GATC 2 cut(s) 137, 457
ScrFI CCNGG 1 cut(s) 40
SetI ASST 8 cut(s) 102, 174, 189, 206, 245, 445, 513, 553
SfaNI GCATC 2 cut(s) 39, 517
SfcI CTRYAG 2 cut(s) 350, 360
SmlI CTYRAG 2 cut(s) 101, 381
SmoI CTYRAG 2 cut(s) 101, 381
Sse9I AATT 1 cut(s) 620
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 451
TaqI TCGA 2 cut(s) 245, 397
TaqII GACCGA 1 cut(s) 470
TasI AATT 1 cut(s) 620
TfiI GAWTC 3 cut(s) 7, 132, 265
Tru1I TTAA 2 cut(s) 285, 425
Tru9I TTAA 2 cut(s) 285, 425
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 2 cut(s) 187, 278
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 2 cut(s) 17, 576
TspGWI ACGGA 1 cut(s) 450
VspI ATTAAT 1 cut(s) 425
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 620
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.