Rmu_sc0005442.1_g000012

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005442.1
OG0013101
Physical Location & Seq
Reverse (-)
45270 .. 46076
807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ctgaaccacttttttctttgctccttcaaggcttcagagtttttgtatctgttgaattgcacattcggatacgcagctttcatggcggcctcgtttgtctcgaaccccgacccctgtcttgactcgagtcgcaagaaacgtcgaaaagtcgaggatgatcggaatccggcttcaactactcaagcgagatggagatccgataaagagcaacggatctattcaactaagctggtggaggcgctccggaaggttcgccagggatcatcatcgtcgccggtagcggtctccggggggaaaatcgtgaaggaagcagccgacagggttctggccgtggcggcgaaaggtacgactcggtggagcagagcgattctgaggagtcgactcaggctgagcaagaggcttcagaagtgtagaaaggcgagggttaccggggatagcaggtgtaagagggcggacgtgaggagagagaggaggaggacgccggctgtgcagaagaaagttaaggttcttagccagttggttcccggttgccggaaggctccgttgccgaaccttctagaagaaacgaccgattacatagcggcgctggagatgcaggttcgagctatgacggttctgacggagcttctctccggtgctccggcggccaatcgtctcaactttaccagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.06

Weight (kDa)

10.74

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 68 - 127 7.3e-12 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09250
fragaria_vesca FvH4_6g07630 FvH4_6g07630
malus_domestica MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica Prupe.6G311800_v2.0.a1
pyrus_communis pycom04g17000 pycom12g19250
rosa_chinensis RchiOBHm_Chr3g0457291
rosa_laevigata RLG00000025236
rosa_multiflora Rmu_sc0005442.1_g000012
rosa_roxburghii Rroxscaffold_6G00422010
rosa_rugosa Rorug03G0019700
rosa_samantha Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana Rw3G006880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 429
Acc36I ACCTGC 2 cut(s) 429, 586
AccI GTMKAC 1 cut(s) 379
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 6 cut(s) 86, 281, 335, 452, 581, 644
AclWI GGATC 3 cut(s) 189, 221, 268
AcoI YGGCCR 2 cut(s) 327, 645
AcuI CTGAAG 2 cut(s) 18, 386
AcyI GRCGYC 1 cut(s) 479
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 531
AgsI TTSAA 4 cut(s) 28, 55, 174, 222
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 4 cut(s) 77, 229, 605, 625
AluI AGCT 4 cut(s) 77, 229, 605, 625
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 3 cut(s) 103, 289, 659
AlwI GGATC 3 cut(s) 189, 221, 268
Ama87I CYCGRG 1 cut(s) 124
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 3 cut(s) 87, 327, 645
ApeKI GCWGC 2 cut(s) 74, 311
AspLEI GCGC 2 cut(s) 241, 586
AsuC2I CCSGG 3 cut(s) 289, 430, 525
AvaI CYCGRG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 2 cut(s) 86, 323
BccI CCATC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 257
BciVI GTATCC 1 cut(s) 62
BcnI CCSGG 3 cut(s) 289, 430, 525
BcoDI GTCTC 3 cut(s) 103, 289, 659
BfaI CTAG 1 cut(s) 557
BfoI RGCGCY 2 cut(s) 242, 587
BfuAI ACCTGC 2 cut(s) 429, 586
BfuI GTATCC 1 cut(s) 62
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 6 cut(s) 75, 87, 312, 336, 582, 645
BlpI GCTNAGC 1 cut(s) 389
BlsI GCNGC 6 cut(s) 76, 88, 313, 337, 583, 646
Bme1390I CCNGG 4 cut(s) 257, 289, 430, 525
BmeT110I CYCGRG 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 522, 540
BmrFI CCNGG 4 cut(s) 257, 289, 430, 525
BmsI GCATC 1 cut(s) 582
BoxI GACNNNNGTC 2 cut(s) 114, 126
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpmI CTGGAG 1 cut(s) 608
Bpu1102I GCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 165
BpuMI CCSGG 3 cut(s) 289, 430, 525
BsaBI GATNNNNATC 3 cut(s) 162, 193, 265
BsaHI GRCGYC 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 4 cut(s) 256, 288, 330, 429
BsaWI WCCGGW 2 cut(s) 243, 632
Bsc4I CCNNNNNNNGG 1 cut(s) 531
Bse118I RCCGGY 2 cut(s) 274, 481
Bse1I ACTGG 2 cut(s) 514, 666
Bse8I GATNNNNATC 3 cut(s) 162, 193, 265
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 4 cut(s) 256, 288, 330, 429
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 3 cut(s) 162, 193, 265
BseLI CCNNNNNNNGG 1 cut(s) 531
BseMII CTCAG 3 cut(s) 362, 380, 397
BseNI ACTGG 2 cut(s) 514, 666
BseRI GAGGAG 4 cut(s) 388, 475, 484, 487
BseXI GCAGC 2 cut(s) 86, 323
BsgI GTGCAG 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 570
BshFI GGCC 3 cut(s) 89, 329, 647
BsiEI CGRYCG 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 531
BsmAI GTCTC 3 cut(s) 103, 289, 659
BsmBI CGTCTC 1 cut(s) 659
BsnI GGCC 3 cut(s) 89, 329, 647
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 640
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 4 cut(s) 157, 194, 213, 260
Bsp1720I GCTNAGC 1 cut(s) 389
BspACI CCGC 6 cut(s) 86, 281, 335, 452, 581, 644
BspANI GGCC 3 cut(s) 89, 329, 647
BspCNI CTCAG 3 cut(s) 363, 381, 396
BspEI TCCGGA 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 522, 540
BspMI ACCTGC 2 cut(s) 429, 586
BspPI GGATC 3 cut(s) 189, 221, 268
BspTNI GGTCTC 1 cut(s) 289
BsrFI RCCGGY 2 cut(s) 274, 481
BsrI ACTGG 2 cut(s) 514, 666
BssAI RCCGGY 2 cut(s) 274, 481
BssECI CCNNGG 4 cut(s) 256, 288, 330, 429
BssMI GATC 4 cut(s) 157, 194, 213, 260
BssNI GRCGYC 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 613
BstACI GRCGYC 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 5 cut(s) 225, 371, 383, 389, 509
BstDSI CCRYGG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 1 cut(s) 160
BstH2I RGCGCY 2 cut(s) 242, 587
BstHHI GCGC 2 cut(s) 241, 586
BstKTI GATC 4 cut(s) 160, 197, 216, 263
BstMAI GTCTC 3 cut(s) 103, 289, 659
BstMBI GATC 4 cut(s) 157, 194, 213, 260
BstMCI CGRYCG 1 cut(s) 570
BstMWI GCNNNNNNNGC 5 cut(s) 83, 335, 487, 592, 644
BstNI CCWGG 1 cut(s) 257
BstPAI GACNNNNGTC 2 cut(s) 114, 126
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 4 cut(s) 255, 287, 428, 523
BstV1I GCAGC 2 cut(s) 86, 323
BstX2I RGATCY 2 cut(s) 194, 213
BstYI RGATCY 2 cut(s) 194, 213
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 3 cut(s) 89, 329, 647
BtgI CCRYGG 1 cut(s) 330
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 1 cut(s) 160
BveI ACCTGC 2 cut(s) 429, 586
Cac8I GCNNGC 1 cut(s) 483
CfoI GCGC 2 cut(s) 241, 586
Cfr10I RCCGGY 2 cut(s) 274, 481
CseI GACGC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 345
CviAII CATG 1 cut(s) 82
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 5 cut(s) 225, 371, 383, 389, 509
DpnI GATC 4 cut(s) 159, 196, 215, 262
DpnII GATC 4 cut(s) 157, 194, 213, 260
EaeI YGGCCR 2 cut(s) 327, 645
EciI GGCGGA 1 cut(s) 467
Eco31I GGTCTC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 18, 386
Eco88I CYCGRG 1 cut(s) 124
Eco91I GGTNACC 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 659
FaeI CATG 1 cut(s) 85
FaiI YATR 3 cut(s) 83, 578, 608
FatI CATG 1 cut(s) 81
FblI GTMKAC 1 cut(s) 379
Fnu4HI GCNGC 6 cut(s) 75, 87, 312, 336, 582, 645
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 6 cut(s) 75, 87, 312, 336, 582, 645
FspBI CTAG 1 cut(s) 557
GlaI GCGC 2 cut(s) 240, 585
GluI GCNGC 6 cut(s) 75, 87, 312, 336, 582, 645
GsuI CTGGAG 1 cut(s) 608
HaeII RGCGCY 2 cut(s) 242, 587
HaeIII GGCC 3 cut(s) 89, 329, 647
HgaI GACGC 1 cut(s) 487
HhaI GCGC 2 cut(s) 241, 586
Hin1I GRCGYC 1 cut(s) 479
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 2 cut(s) 239, 584
HinP1I GCGC 2 cut(s) 239, 584
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HinfI GANTC 7 cut(s) 122, 127, 163, 349, 367, 376, 381
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 7 cut(s) 37, 68, 162, 199, 372, 405, 618
Hpy188III TCNNGA 5 cut(s) 100, 119, 244, 301, 557
Hpy8I GTNNAC 1 cut(s) 380
Hpy99I CGWCG 2 cut(s) 144, 274
HpyAV CCTTC 5 cut(s) 34, 241, 298, 529, 563
HpyCH4III ACNGT 1 cut(s) 613
HpyCH4IV ACGT 2 cut(s) 139, 456
HpyCH4V TGCA 3 cut(s) 60, 490, 595
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 335, 487, 592, 644
HpyF3I CTNAG 5 cut(s) 225, 371, 383, 389, 509
HpySE526I ACGT 2 cut(s) 139, 456
Hsp92I GRCGYC 1 cut(s) 479
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 2 cut(s) 239, 584
Kpn2I TCCGGA 1 cut(s) 243
KroI GCCGGC 1 cut(s) 481
KroNI GCCGGC 1 cut(s) 483
Kzo9I GATC 4 cut(s) 157, 194, 213, 260
LmnI GCTCC 6 cut(s) 26, 246, 357, 544, 622, 643
Lsp1109I GCAGC 2 cut(s) 86, 323
LweI GCATC 1 cut(s) 582
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 139, 456
MaeIII GTNAC 1 cut(s) 424
MalI GATC 4 cut(s) 159, 196, 215, 262
MboI GATC 4 cut(s) 157, 194, 213, 260
MboII GAAGA 2 cut(s) 505, 572
MflI RGATCY 2 cut(s) 194, 213
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 1 cut(s) 55
MlyI GAGTC 5 cut(s) 116, 136, 343, 375, 385
MroI TCCGGA 1 cut(s) 243
MroNI GCCGGC 1 cut(s) 481
MseI TTAA 1 cut(s) 501
MspR9I CCNGG 4 cut(s) 257, 289, 430, 525
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 5 cut(s) 83, 335, 487, 592, 644
NaeI GCCGGC 1 cut(s) 483
NciI CCSGG 3 cut(s) 289, 430, 525
NdeII GATC 4 cut(s) 157, 194, 213, 260
NgoMIV GCCGGC 1 cut(s) 481
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 522, 540
PaeR7I CTCGAG 1 cut(s) 124
PaqCI CACCTGC 1 cut(s) 429
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 136
PdiI GCCGGC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 163, 367
PkrI GCNGC 6 cut(s) 76, 88, 313, 337, 583, 646
PleI GAGTC 5 cut(s) 116, 135, 343, 375, 384
PpsI GAGTC 5 cut(s) 116, 135, 343, 375, 384
PshAI GACNNNNGTC 2 cut(s) 114, 126
Psp6I CCWGG 1 cut(s) 255
PspEI GGTNACC 1 cut(s) 424
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 522, 540
PspXI VCTCGAGB 1 cut(s) 124
PsuI RGATCY 2 cut(s) 194, 213
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
SalI GTCGAC 1 cut(s) 378
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 6 cut(s) 75, 87, 312, 336, 582, 645
Sau3AI GATC 4 cut(s) 157, 194, 213, 260
SchI GAGTC 5 cut(s) 116, 136, 343, 375, 385
ScrFI CCNGG 4 cut(s) 257, 289, 430, 525
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 124
SmlI CTYRAG 2 cut(s) 124, 180
SmoI CTYRAG 2 cut(s) 124, 180
Sse9I AATT 1 cut(s) 55
SsiI CCGC 6 cut(s) 86, 281, 335, 452, 581, 644
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 4 cut(s) 255, 287, 428, 523
TaaI ACNGT 1 cut(s) 613
TaiI ACGT 2 cut(s) 142, 459
TaqI TCGA 6 cut(s) 101, 125, 142, 150, 379, 601
TaqII GACCGA 1 cut(s) 584
TasI AATT 1 cut(s) 55
TauI GCSGC 4 cut(s) 89, 338, 584, 647
TfiI GAWTC 2 cut(s) 163, 367
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TseI GCWGC 2 cut(s) 74, 311
TspDTI ATGAA 1 cut(s) 70
TspGWI ACGGA 3 cut(s) 226, 531, 635
XbaI TCTAGA 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 379
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.