Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005570.1

Orthogroup ID

OG0014818

Physical Location & Seq

Genomic Coordinates Reverse (-)

82664 .. 83487

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005570.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggagtcgataatcgtcccccatgaagctgatcataaattgccgggagcagttggaagtggtacggaaaatagatcagtggaaaccacttccttaaggcaaagatttcttgcttcaattggtgcccatgaatacttttcaccagagatgtggagagcagctcttacagagtttgtagcaactgcgtgtctaatgttcaccttgacgtcttcaatcatctcatgcttggattcacatgaggttgatcccaagctattagtaccctttgcggtcttcatcatagccttccttttcctcttggtgacagttcctttatctggtggtcatatgagtcctgttttcacattcatagctgccctaaacggtgttataactcttgctagagcttccatctacatcttgatgcaatgtgttggttcaattgtgggatttcttattatcaagactgtgatggaccataatacatcccaaaagtactccttaggtggctgcacaacacatggagtaggcacccaaacagcattgatgttagaatttgtttgcacatttgtggttctctttgttggagtcactgtagcattcgacaagaaaaggtgcaaggaacttggtttagcaatggtgtgtctcgtggtggccggggctatggcacttgcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko04962 ko04976 map04962 map04976

Pfam Domains

Protein Families

MIP

Protein Analysis

219

Amino Acids

23.51

Weight (kDa)

6.36

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014818)

Species	Orthologous Gene IDs
malus_domestica	MD05G1114500.v1.1
prunus_persica	Prupe.8G158900_v2.0.a1
pyrus_communis	pycom05g10930
rosa_chinensis	RchiOBHm_Chr6g0245851 RchiOBHm_Chr6g0245871
rosa_laevigata	RLG00000015293
rosa_multiflora	Rmu_sc0005570.1_g000016 Rmu_sc0008277.1_g000007
rosa_rugosa	Rorug05G0516300
rosa_samantha	Rh6AG030900 Rh6AG031200 Rh6BG027700 Rh6CG027200 Rh6CG027500 Rh6DG026400 Rh6DG026600
rosa_wichuraiana	Rw6G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AatII	GACGTC	1 cut(s)	209
AccB1I	GGYRCC	2 cut(s)	122, 509
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	3 cut(s)	64, 261, 476
AfiI	CCNNNNNNNGG	1 cut(s)	317
AflII	CTTAAG	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	117, 213, 420
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	5 cut(s)	29, 161, 253, 353, 386
AluI	AGCT	5 cut(s)	29, 161, 253, 353, 386
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	633
ApeKI	GCWGC	3 cut(s)	158, 353, 489
ApoI	RAATTY	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	2 cut(s)	45, 637
AsuHPI	GGTGA	3 cut(s)	132, 190, 313
AvaII	GGWCC	1 cut(s)	454
AxyI	CCTNAGG	1 cut(s)	481
BaeGI	GKGCMC	1 cut(s)	127
BanI	GGYRCC	2 cut(s)	122, 509
BauI	CACGAG	1 cut(s)	626
BbsI	GAAGAC	2 cut(s)	201, 265
BbvI	GCAGC	3 cut(s)	170, 340, 476
BccI	CCATC	2 cut(s)	398, 445
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	45, 637
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	573
BfrI	CTTAAG	1 cut(s)	94
BisI	GCNGC	3 cut(s)	159, 354, 490
BlsI	GCNGC	3 cut(s)	160, 355, 491
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	2 cut(s)	45, 637
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	2 cut(s)	124, 511
BmrFI	CCNGG	2 cut(s)	45, 637
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	201, 265
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpuMI	CCSGG	2 cut(s)	45, 637
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	636
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse21I	CCTNAGG	1 cut(s)	481
Bse3DI	GCAATG	2 cut(s)	413, 621
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMI	GCAATG	2 cut(s)	413, 621
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	170, 340, 476
BsgI	GTGCAG	1 cut(s)	475
BshFI	GGCC	1 cut(s)	635
BshNI	GGYRCC	2 cut(s)	122, 509
BsiSI	CCGG	2 cut(s)	44, 636
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	635
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	31, 74, 244
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	635
BspLI	GGNNCC	2 cut(s)	124, 511
BspPI	GGATC	1 cut(s)	239
BspT107I	GGYRCC	2 cut(s)	122, 509
BspTI	CTTAAG	1 cut(s)	94
BsrDI	GCAATG	2 cut(s)	413, 621
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	3 cut(s)	31, 74, 244
BssNI	GRCGYC	1 cut(s)	206
BssSI	CACGAG	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	626
Bst4CI	ACNGT	4 cut(s)	307, 365, 448, 574
BstACI	GRCGYC	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	481
BstF5I	GGATG	1 cut(s)	464
BstKTI	GATC	3 cut(s)	34, 77, 247
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	3 cut(s)	31, 74, 244
BstSCI	CCNGG	2 cut(s)	43, 635
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	170, 340, 476
BstV2I	GAAGAC	2 cut(s)	201, 265
BstXI	CCANNNNNNTGG	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	635
BtsCI	GGATG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	84, 570
Cfr13I	GGNCC	1 cut(s)	454
Csp6I	GTAC	3 cut(s)	63, 260, 475
CviAII	CATG	5 cut(s)	23, 128, 222, 236, 500
CviJI	RGCY	9 cut(s)	29, 161, 253, 284, 353, 386, 489, 635, 641
CviKI_1	RGCY	9 cut(s)	29, 161, 253, 284, 353, 386, 489, 635, 641
CviQI	GTAC	3 cut(s)	63, 260, 475
DdeI	CTNAG	1 cut(s)	481
DpnI	GATC	3 cut(s)	33, 76, 246
DpnII	GATC	3 cut(s)	31, 74, 244
EaeI	YGGCCR	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	454
Eco81I	CCTNAGG	1 cut(s)	481
FaeI	CATG	5 cut(s)	26, 131, 225, 239, 503
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	5 cut(s)	22, 127, 221, 235, 499
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	159, 354, 490
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	3 cut(s)	159, 354, 490
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	3 cut(s)	159, 354, 490
HaeIII	GGCC	1 cut(s)	635
HapII	CCGG	2 cut(s)	44, 636
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	5 cut(s)	26, 131, 225, 239, 503
HinfI	GANTC	4 cut(s)	5, 230, 331, 567
HpaII	CCGG	2 cut(s)	44, 636
HphI	GGTGA	3 cut(s)	132, 190, 313
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	400, 442
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	4 cut(s)	307, 365, 448, 574
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	5 cut(s)	406, 492, 543, 597, 653
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	5 cut(s)	26, 131, 225, 239, 503
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	31, 74, 244
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	5 cut(s)	57, 156, 303, 348, 649
Lsp1109I	GCAGC	3 cut(s)	170, 340, 476
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	301, 568
MalI	GATC	3 cut(s)	33, 76, 246
MboI	GATC	3 cut(s)	31, 74, 244
MboII	GAAGA	2 cut(s)	201, 265
MfeI	CAATTG	2 cut(s)	117, 420
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	4 cut(s)	38, 117, 420, 533
MlyI	GAGTC	3 cut(s)	14, 340, 576
MmeI	TCCRAC	2 cut(s)	34, 544
MnlI	CCTC	2 cut(s)	232, 305
MseI	TTAA	2 cut(s)	95, 658
MslI	CAYNNNNRTG	2 cut(s)	401, 548
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	2 cut(s)	44, 636
MspR9I	CCNGG	2 cut(s)	45, 637
MunI	CAATTG	2 cut(s)	117, 420
Mva1269I	GAATGC	1 cut(s)	578
NciI	CCSGG	2 cut(s)	45, 637
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	3 cut(s)	31, 74, 244
NlaIII	CATG	5 cut(s)	26, 131, 225, 239, 503
NlaIV	GGNNCC	2 cut(s)	124, 511
NmuCI	GTSAC	2 cut(s)	301, 568
OliI	CACNNNNGTG	1 cut(s)	548
PctI	GAATGC	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	160, 355, 491
PleI	GAGTC	3 cut(s)	13, 339, 575
PpsI	GAGTC	3 cut(s)	13, 339, 575
PsiI	TTATAA	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	124, 511
PspPI	GGNCC	1 cut(s)	454
RsaI	GTAC	3 cut(s)	64, 261, 476
RsaNI	GTAC	3 cut(s)	63, 260, 475
RseI	CAYNNNNRTG	2 cut(s)	401, 548
SaqAI	TTAA	2 cut(s)	95, 658
SatI	GCNGC	3 cut(s)	159, 354, 490
Sau3AI	GATC	3 cut(s)	31, 74, 244
Sau96I	GGNCC	1 cut(s)	454
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	3 cut(s)	14, 340, 576
ScrFI	CCNGG	2 cut(s)	45, 637
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	393
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	2 cut(s)	401, 548
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	4 cut(s)	38, 117, 420, 533
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	43, 635
TaaI	ACNGT	4 cut(s)	307, 365, 448, 574
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	8, 582
TasI	AATT	4 cut(s)	38, 117, 420, 533
TatI	WGTACW	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	95, 658
Tru9I	TTAA	2 cut(s)	95, 658
TscAI	CASTG	2 cut(s)	84, 577
TseFI	GTSAC	2 cut(s)	301, 568
TseI	GCWGC	3 cut(s)	158, 353, 489
Tsp45I	GTSAC	2 cut(s)	301, 568
TspDTI	ATGAA	4 cut(s)	39, 144, 265, 337
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	84, 577
Vha464I	CTTAAG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	533
XspI	CTAG	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	207
ZrmI	AGTACT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.