Rmu_sc0008277.1_g000007

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008277.1
OG0014818
Physical Location & Seq
Reverse (-)
23811 .. 24140
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008277.1_g000007.1.cds

Sequence Viewer

Length: 330 bp
atgttagaatttgtttgcacatttgtggttctctttgttggagtcactgtggcattcgacaagaaaaggtgcaaggaacttggtttagcaatggtgtgtctcgtggtggccgaggctatggcacttgcagtttttgtgtccattacagtcactgggaagtccgggtatgcaggcgtggggctgaacccgacaaggtgcttaggacctgcattgttgcaaggggggatattatgggatggtcattgggttttctgggttggctccatcttggcctgcagtgtgtactattgtttctctttgaacttgcccaaggagggtttgccattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko04962 ko04976 map04962 map04976
Pfam Domains
Protein Families
MIP

Protein Analysis

109

Amino Acids

11.69

Weight (kDa)

7.57

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 1 cut(s) 301
AleI CACNNNNGTG 1 cut(s) 23
Alw26I GTCTC 1 cut(s) 104
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 2 cut(s) 108, 270
ApoI RAATTY 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 203
BauI CACGAG 1 cut(s) 101
BccI CCATC 2 cut(s) 230, 272
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 111, 309
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 111, 309
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 157
BshFI GGCC 2 cut(s) 110, 272
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 2 cut(s) 110, 272
BspANI GGCC 2 cut(s) 110, 272
BspLI GGNNCC 1 cut(s) 262
BspMAI CTGCAG 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 111, 309
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 101
Bst4CI ACNGT 2 cut(s) 49, 148
BstC8I GCNNGC 2 cut(s) 172, 274
BstDEI CTNAG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 274
BsuRI GGCC 2 cut(s) 110, 272
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 3 cut(s) 45, 150, 283
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 172, 274
CaiI CAGNNNCTG 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 283
CviJI RGCY 5 cut(s) 110, 116, 181, 261, 272
CviKI_1 RGCY 5 cut(s) 110, 116, 181, 261, 272
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaiI YATR 3 cut(s) 119, 168, 232
FokI GGATG 1 cut(s) 248
HaeIII GGCC 2 cut(s) 110, 272
HapII CCGG 1 cut(s) 162
HinfI GANTC 1 cut(s) 42
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 49, 148
HpyCH4V TGCA 7 cut(s) 18, 72, 128, 170, 209, 217, 276
HpyF3I CTNAG 1 cut(s) 199
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 6 cut(s) 138, 156, 175, 219, 238, 286
MaeIII GTNAC 2 cut(s) 43, 148
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 2 cut(s) 106, 307
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 262
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 43, 148
OliI CACNNNNGTG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 53
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 203
PspPPI RGGWCCY 1 cut(s) 203
PstI CTGCAG 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 163
SetI ASST 3 cut(s) 71, 197, 208
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 23
Sse9I AATT 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 49, 148
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 8
TatI WGTACW 1 cut(s) 282
TscAI CASTG 3 cut(s) 52, 157, 283
TseFI GTSAC 2 cut(s) 43, 148
Tsp45I GTSAC 2 cut(s) 43, 148
TspRI CASTG 3 cut(s) 52, 157, 283
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.