Rmu_sc0005600.1_g000015

Transcription initiation factor TFIID subunit 8-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005600.1
OG0011784
Physical Location & Seq
Reverse (-)
66480 .. 67172
693 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
atgagccatggagatggggaaagtagcagagtgaatgattccggcgatgcggcccgaagagcacaaccgggagctgatgagtttgggcgggcggtttcgaaggtcgccgtggcgcagatatgtgaaggcgtggggtttctgggcatcaaggagtcggctttggactccctcgctgacattgccatcagatacctccgtgacttaggaaagatggccaattattatgctaacttggccggtaggactgaatctaatgtgtttgatgttgttagagggttcgaagatttggagtcattgcaagggttttcgggtgccgcggatgttacacattgtctagccgggtcggggacgatgaagggacttgttcagtatgtgggtactgcggaggagaatccgtttgctcagccgttgcctaggtttccggtggtgaaggatcggaggttaattccgagttttgagcagatagaggaagagaggaggctacttccgaattcaaggccccctgttcatttaaatttcagacccgtgaagaaatttcttggcgaatcatcggatttcagcctcctaaagaagggttcagggagaccagcaaattgggttttgcgagatgaagaaagggatgaaaagaagaggagagctgagtttattcttagacaatccatggaaaacccacaggaactcaatcaggcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromo_TP TAF8_C

Protein Analysis

230

Amino Acids

25.47

Weight (kDa)

6.02

Isoelectric Point (pI)

57.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromo_TP PF07524 27 - 96 1e-19 Bromodomain associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34340 AT4G34340
fragaria_vesca FvH4_6g16290
malus_domestica MD04G1094100.v1.1 MD12G1113700.v1.1
prunus_persica Prupe.6G232600_v2.0.a1
pyrus_communis pycom04g08910 pycom12g11260
rosa_chinensis RchiOBHm_Chr3g0470151
rosa_laevigata RLG00000024292
rosa_multiflora Rmu_co8416013.1_g000001 Rmu_sc0005600.1_g000015
rosa_roxburghii Rroxscaffold_6G00411140
rosa_rugosa Rorug03G0107400
rosa_samantha Rh3BG180500 Rh3CG171300 Rh3DG194400
rosa_wichuraiana Rw3G014740 Rw3G014830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 1 cut(s) 317
AciI CCGC 6 cut(s) 50, 88, 92, 315, 317, 383
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 2 cut(s) 213, 234
AcsI RAATTY 3 cut(s) 490, 514, 533
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 2 cut(s) 345, 571
AgsI TTSAA 1 cut(s) 495
AluBI AGCT 2 cut(s) 74, 638
AluI AGCT 2 cut(s) 74, 638
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 577
AlwI GGATC 1 cut(s) 441
AoxI GGCC 4 cut(s) 51, 213, 234, 497
ApoI RAATTY 3 cut(s) 490, 514, 533
AspA2I CCTAGG 1 cut(s) 413
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 52, 498
AsuC2I CCSGG 2 cut(s) 69, 340
AsuHPI GGTGA 1 cut(s) 439
AsuII TTCGAA 2 cut(s) 98, 279
AvrII CCTAGG 1 cut(s) 413
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 3 cut(s) 8, 191, 205
BceAI ACGGC 2 cut(s) 92, 391
BcnI CCSGG 2 cut(s) 69, 340
BcoDI GTCTC 1 cut(s) 577
BfaI CTAG 2 cut(s) 335, 414
BisI GCNGC 2 cut(s) 51, 315
BlnI CCTAGG 1 cut(s) 413
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 2 cut(s) 52, 316
Bme1390I CCNGG 2 cut(s) 69, 340
BmgT120I GGNCC 2 cut(s) 52, 498
BmiI GGNNCC 2 cut(s) 313, 500
BmrFI CCNGG 2 cut(s) 69, 340
BmsI GCATC 2 cut(s) 37, 153
Bpu1102I GCTNAGC 1 cut(s) 402
Bpu14I TTCGAA 2 cut(s) 98, 279
BpuMI CCSGG 2 cut(s) 69, 340
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 5 cut(s) 7, 108, 315, 413, 660
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 571
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 2 cut(s) 177, 293
BseDI CCNNGG 5 cut(s) 7, 108, 315, 413, 660
BseGI GGATG 2 cut(s) 325, 625
BseLI CCNNNNNNNGG 2 cut(s) 345, 571
BseMI GCAATG 2 cut(s) 177, 293
BseMII CTCAG 2 cut(s) 416, 630
BseRI GAGGAG 3 cut(s) 401, 490, 646
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 4 cut(s) 53, 215, 236, 499
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 5 cut(s) 42, 68, 237, 339, 422
BslFI GGGAC 2 cut(s) 361, 372
BslI CCNNNNNNNGG 2 cut(s) 345, 571
BsmAI GTCTC 1 cut(s) 577
BsmFI GGGAC 2 cut(s) 361, 372
BsnI GGCC 4 cut(s) 53, 215, 236, 499
Bso31I GGTCTC 1 cut(s) 577
Bsp119I TTCGAA 2 cut(s) 98, 279
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 433
Bsp1720I GCTNAGC 1 cut(s) 402
Bsp19I CCATGG 2 cut(s) 7, 660
BspACI CCGC 6 cut(s) 50, 88, 92, 315, 317, 383
BspANI GGCC 4 cut(s) 53, 215, 236, 499
BspCNI CTCAG 2 cut(s) 415, 631
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 313, 500
BspPI GGATC 1 cut(s) 441
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 2 cut(s) 98, 279
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 577
BsrDI GCAATG 2 cut(s) 177, 293
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 5 cut(s) 7, 108, 315, 413, 660
BssMI GATC 1 cut(s) 433
BssT1I CCWWGG 3 cut(s) 7, 413, 660
Bst6I CTCTTC 3 cut(s) 52, 465, 623
BstBI TTCGAA 2 cut(s) 98, 279
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 4 cut(s) 202, 402, 639, 650
BstDSI CCRYGG 4 cut(s) 7, 108, 315, 660
BstENI CCTNNNNNAGG 1 cut(s) 569
BstF5I GGATG 2 cut(s) 325, 625
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 1 cut(s) 433
BstMWI GCNNNNNNNGC 3 cut(s) 59, 179, 233
BstSCI CCNGG 2 cut(s) 67, 338
BstUI CGCG 1 cut(s) 317
BstXI CCANNNNNNTGG 2 cut(s) 14, 594
BsuRI GGCC 4 cut(s) 53, 215, 236, 499
BtgI CCRYGG 4 cut(s) 7, 108, 315, 660
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 325, 625
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 52, 498
Cfr42I CCGCGG 1 cut(s) 318
Csp6I GTAC 1 cut(s) 378
CviAII CATG 2 cut(s) 8, 661
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 4 cut(s) 202, 402, 639, 650
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DraI TTTAAA 1 cut(s) 513
EaeI YGGCCR 2 cut(s) 213, 234
Eam1104I CTCTTC 3 cut(s) 52, 465, 623
EarI CTCTTC 3 cut(s) 52, 465, 623
Eco130I CCWWGG 3 cut(s) 7, 413, 660
Eco31I GGTCTC 1 cut(s) 577
EcoNI CCTNNNNNAGG 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 490
EcoT14I CCWWGG 3 cut(s) 7, 413, 660
ErhI CCWWGG 3 cut(s) 7, 413, 660
FaeI CATG 2 cut(s) 11, 664
FaiI YATR 6 cut(s) 9, 121, 225, 372, 662, 691
FaqI GGGAC 2 cut(s) 361, 372
FatI CATG 2 cut(s) 7, 660
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 51, 315
FokI GGATG 2 cut(s) 332, 632
Fsp4HI GCNGC 2 cut(s) 51, 315
FspBI CTAG 2 cut(s) 335, 414
GlaI GCGC 1 cut(s) 114
GluI GCNGC 2 cut(s) 51, 315
HaeIII GGCC 4 cut(s) 53, 215, 236, 499
HapII CCGG 5 cut(s) 42, 68, 237, 339, 422
HhaI GCGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 11, 664
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 7 cut(s) 38, 152, 164, 248, 290, 391, 545
HpaII CCGG 5 cut(s) 42, 68, 237, 339, 422
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 6 cut(s) 188, 438, 450, 489, 521, 553
HpyAV CCTTC 5 cut(s) 94, 119, 349, 424, 565
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 179, 233
HpyF3I CTNAG 4 cut(s) 202, 402, 639, 650
Hsp92II CATG 2 cut(s) 11, 664
HspAI GCGC 1 cut(s) 113
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 1 cut(s) 433
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 71
LweI GCATC 2 cut(s) 37, 153
MaeI CTAG 2 cut(s) 335, 414
MaeIII GTNAC 2 cut(s) 197, 322
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 6 cut(s) 69, 293, 482, 541, 623, 640
MhlI GDGCHC 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 6 cut(s) 217, 444, 490, 514, 533, 592
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 3 cut(s) 158, 161, 299
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 2 cut(s) 443, 512
MslI CAYNNNNRTG 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 5 cut(s) 42, 68, 237, 339, 422
MspR9I CCNGG 2 cut(s) 69, 340
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 59, 179, 233
NciI CCSGG 2 cut(s) 69, 340
NcoI CCATGG 2 cut(s) 7, 660
NdeII GATC 1 cut(s) 433
NlaIII CATG 2 cut(s) 11, 664
NlaIV GGNNCC 2 cut(s) 313, 500
NmuCI GTSAC 1 cut(s) 197
NspV TTCGAA 2 cut(s) 98, 279
PciSI GCTCTTC 1 cut(s) 52
PfeI GAWTC 4 cut(s) 38, 248, 391, 545
PkrI GCNGC 2 cut(s) 52, 316
PleI GAGTC 3 cut(s) 158, 160, 298
PpsI GAGTC 3 cut(s) 158, 160, 298
PspN4I GGNNCC 2 cut(s) 313, 500
PspPI GGNCC 2 cut(s) 52, 498
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 12
SacII CCGCGG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 443, 512
SatI GCNGC 2 cut(s) 51, 315
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 2 cut(s) 52, 498
SchI GAGTC 3 cut(s) 158, 161, 299
ScrFI CCNGG 2 cut(s) 69, 340
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 76, 105, 195, 419, 443, 640
SfaNI GCATC 2 cut(s) 37, 153
Sfr303I CCGCGG 1 cut(s) 318
SfuI TTCGAA 2 cut(s) 98, 279
SgrBI CCGCGG 1 cut(s) 318
SmiI ATTTAAAT 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 6 cut(s) 217, 444, 490, 514, 533, 592
SsiI CCGC 6 cut(s) 50, 88, 92, 315, 317, 383
SspMI CTAG 2 cut(s) 335, 414
StyD4I CCNGG 2 cut(s) 67, 338
StyI CCWWGG 3 cut(s) 7, 413, 660
SwaI ATTTAAAT 1 cut(s) 513
TaqI TCGA 2 cut(s) 98, 279
TasI AATT 6 cut(s) 217, 444, 490, 514, 533, 592
TauI GCSGC 2 cut(s) 53, 317
TfiI GAWTC 4 cut(s) 38, 248, 391, 545
Tru1I TTAA 2 cut(s) 443, 512
Tru9I TTAA 2 cut(s) 443, 512
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 4 cut(s) 368, 497, 624, 636
TspGWI ACGGA 2 cut(s) 185, 384
XagI CCTNNNNNAGG 1 cut(s) 569
XapI RAATTY 3 cut(s) 490, 514, 533
XmaJI CCTAGG 1 cut(s) 413
XspI CTAG 2 cut(s) 335, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.