Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005698.1

Orthogroup ID

OG0004347

Physical Location & Seq

Genomic Coordinates Reverse (-)

6574 .. 9301

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atggagctccacctcctccgctccactgtttccaccccaactctgtaccctgaccgcacccacaagccaaacccaccaatccagtgtctccgttcatcaaaacggagctccggcccgaaggaactctctcggattctgagaaccgaggctgctgttaaaaacattgagaggaaagcaaactccaacaagtacaataacctctggcctaaggctgtcttggaggccttggatgaggctgttgccaacaatctctgggagactgctcttaagatatttggactactgcgtaagcaacattggtatgagccgagatgccaaacttatgctaaattgttcatgatgcttggaaagtgcaagcaacctgagcaggctggcttacttttcgagctcatgttaactgatgggctcaaaccaactgttgacgtctacacagctcttgttagtgtttatggcaaaagtggcctctttgacaaggcattctctactgttgatgatatgaagtcaatttctgactgcaaaccagattcatatacaatactcttatctgttgatgatatgaagtcaatttctgactgcaaaccagatgtatatacatattcaattcttataaattgctgcaccaaattcagtcgctatgatctgattgagcaagttctggctgaaatgtcatatctgggaattggatgtaacacagtcatatacaatactcttattgatggatatggtaaagctgagatgtttgaactgatggaggactcattgacagatatgattgaaagtggcagctgccttcctgatgttttcacattcaattcttttcttggcgcttatgggaaaagtgggcagatagacaagatggagaagtggtatgatgaatttcagctaatgggaataaagccagaccttaagacatttaatgtcctgattaaatcatatgggaaagcaagaatgtatgaaaagatgggatctgttatggagtttatggagaaaaggtatttcaccccaactgttgttacttataacatagtaattgaggtatttgggaaagctggaaatattgtgaagatggaggaatacttcagaaaaatgaagcaccaaggaatgaagcctagctctattacttattgttccctcgttagtgcgtacagcaaagctgggaatataaataaagttgattccattttgaggcaagtagagaattcagatgttatacttgatacagcttttttcaactgtattattagtgcttatggtcgggctggtgatataaataagatgggtgaattatttttgaccatggaagagaaaaaatgtgttcctgatcatatcacctttgctaccatgatccaagcctgcaatgcactaggcatgactgcagctgtcgaagatttaaaaaacaggatgattaccaccaatgacagttcaggcacaaggttgattggattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

482

Amino Acids

54.49

Weight (kDa)

7.42

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	138 - 178	2e-06	PPR repeat family
PPR_3	PF13812	185 - 243	1.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	230 - 272	5e-07	PPR repeat family
PPR_2	PF13041	265 - 313	2.1e-11	PPR repeat family
PPR_3	PF13812	291 - 349	7.4e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	304 - 347	6.1e-08	PPR repeat family
TPR_24	PF23276	323 - 428	3.6e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	335 - 384	1.4e-11	PPR repeat family
PPR	PF01535	338 - 367	5.8e-06	PPR repeat
PPR_3	PF13812	393 - 452	4.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	406 - 452	1.6e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53170 AT3G53170 AT3G53170 AT3G53170
fragaria_vesca	FvH4_7g01420
malus_domestica	MD02G1305700.v1.1 MD02G1306000.v1.1
prunus_persica	Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1 Prupe.2G019900_v2.0.a1
pyrus_communis	pycom02g25620
rosa_chinensis	RchiOBHm_Chr1g0317271
rosa_laevigata	RLG00000029578 RLG00000030614 RLG00000030617
rosa_multiflora	Rmu_sc0005698.1_g000002 Rmu_sc0007593.1_g000003
rosa_roxburghii	Rroxscaffold_4G00327510 Rroxscaffold_4G00330560
rosa_rugosa	Rorug01G0015300 Rorug01G0015400 Rorug01G0015400
rosa_samantha	Rh1AG026400 Rh1BG022700 Rh1CG024600 Rh1CG049800 Rh1DG047300 Rh1DG054300
rosa_wichuraiana	Rw1G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	608, 1020
AatII	GACGTC	1 cut(s)	426
AccBSI	CCGCTC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	2 cut(s)	19, 55
AclWI	GGATC	2 cut(s)	973, 1339
AcsI	RAATTY	3 cut(s)	623, 875, 1198
AcuI	CTGAAG	1 cut(s)	1063
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	3 cut(s)	47, 191, 1145
AfiI	CCNNNNNNNGG	1 cut(s)	1185
AflII	CTTAAG	2 cut(s)	266, 905
AgsI	TTSAA	5 cut(s)	600, 743, 776, 811, 1231
Alw21I	GWGCWC	3 cut(s)	9, 110, 390
Alw26I	GTCTC	2 cut(s)	92, 251
AlwI	GGATC	2 cut(s)	973, 1339
AoxI	GGCC	4 cut(s)	112, 203, 222, 460
ApeKI	GCWGC	5 cut(s)	149, 615, 783, 786, 1376
ApoI	RAATTY	3 cut(s)	623, 875, 1198
AspLEI	GCGC	1 cut(s)	827
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	4 cut(s)	991, 1274, 1292, 1321
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	4 cut(s)	9, 110, 390, 408
Bbv12I	GWGCWC	3 cut(s)	9, 110, 390
BbvI	GCAGC	5 cut(s)	136, 602, 773, 795, 1388
BccI	CCATC	7 cut(s)	395, 710, 742, 850, 955, 1060, 1270
BclI	TGATCA	1 cut(s)	1321
BcoDI	GTCTC	2 cut(s)	92, 251
BfaI	CTAG	3 cut(s)	1110, 1364, 1447
BfmI	CTRYAG	1 cut(s)	1374
BfoI	RGCGCY	1 cut(s)	828
BfrI	CTTAAG	2 cut(s)	266, 905
BisI	GCNGC	5 cut(s)	150, 616, 784, 787, 1377
BlsI	GCNGC	5 cut(s)	151, 617, 785, 788, 1378
BmgT120I	GGNCC	1 cut(s)	113
BmsI	GCATC	2 cut(s)	302, 330
Bpu10I	CCTNAGC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	144, 225, 1096, 1296
BsaXI	ACNNNNNCTCC	4 cut(s)	851, 881, 977, 1007
Bsc4I	CCNNNNNNNGG	1 cut(s)	1185
Bse1I	ACTGG	1 cut(s)	82
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	1363
BseDI	CCNNGG	4 cut(s)	144, 225, 1096, 1296
BseGI	GGATG	3 cut(s)	235, 689, 1407
BseLI	CCNNNNNNNGG	1 cut(s)	1185
BseMI	GCAATG	1 cut(s)	1363
BseMII	CTCAG	3 cut(s)	128, 354, 723
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	5
BseXI	GCAGC	5 cut(s)	136, 602, 773, 795, 1388
BseYI	CCCAGC	1 cut(s)	1154
BsgI	GTGCAG	1 cut(s)	601
BshFI	GGCC	4 cut(s)	114, 205, 224, 462
BsiHKAI	GWGCWC	3 cut(s)	9, 110, 390
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	1185
BsmAI	GTCTC	2 cut(s)	92, 251
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	4 cut(s)	114, 205, 224, 462
Bsp1286I	GDGCHC	4 cut(s)	9, 110, 390, 408
Bsp143I	GATC	4 cut(s)	637, 965, 1321, 1344
Bsp19I	CCATGG	1 cut(s)	1296
BspACI	CCGC	2 cut(s)	19, 55
BspANI	GGCC	4 cut(s)	114, 205, 224, 462
BspCNI	CTCAG	3 cut(s)	129, 355, 724
BspHI	TCATGA	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	1378
BspPI	GGATC	2 cut(s)	973, 1339
BspTI	CTTAAG	2 cut(s)	266, 905
BsrBI	CCGCTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	1363
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	4 cut(s)	144, 225, 1096, 1296
BssMI	GATC	4 cut(s)	637, 965, 1321, 1344
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	3 cut(s)	225, 1096, 1296
Bst4CI	ACNGT	7 cut(s)	28, 418, 487, 694, 1009, 1235, 1421
Bst6I	CTCTTC	1 cut(s)	1296
BstACI	GRCGYC	1 cut(s)	423
BstAFI	CTTAAG	2 cut(s)	266, 905
BstC8I	GCNNGC	4 cut(s)	356, 369, 373, 1354
BstDEI	CTNAG	4 cut(s)	137, 207, 363, 732
BstDSI	CCRYGG	1 cut(s)	1296
BstF5I	GGATG	3 cut(s)	235, 689, 1407
BstH2I	RGCGCY	1 cut(s)	828
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	4 cut(s)	640, 968, 1324, 1347
BstMAI	GTCTC	2 cut(s)	92, 251
BstMBI	GATC	4 cut(s)	637, 965, 1321, 1344
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 459, 1358
BstSFI	CTRYAG	1 cut(s)	1374
BstV1I	GCAGC	5 cut(s)	136, 602, 773, 795, 1388
BstX2I	RGATCY	1 cut(s)	965
BstYI	RGATCY	1 cut(s)	965
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	4 cut(s)	114, 205, 224, 462
BtgI	CCRYGG	1 cut(s)	1296
BtsCI	GGATG	3 cut(s)	235, 689, 1407
BtsIMutI	CAGTG	2 cut(s)	24, 89
Cac8I	GCNNGC	4 cut(s)	356, 369, 373, 1354
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	1 cut(s)	827
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	46, 190, 1144
CviAII	CATG	5 cut(s)	337, 391, 1297, 1342, 1369
CviQI	GTAC	3 cut(s)	46, 190, 1144
DdeI	CTNAG	4 cut(s)	137, 207, 363, 732
DpnI	GATC	4 cut(s)	639, 967, 1323, 1346
DpnII	GATC	4 cut(s)	637, 965, 1321, 1344
DraI	TTTAAA	1 cut(s)	1392
Eam1104I	CTCTTC	1 cut(s)	1296
EarI	CTCTTC	1 cut(s)	1296
Ecl136II	GAGCTC	3 cut(s)	7, 108, 388
Eco130I	CCWWGG	3 cut(s)	225, 1096, 1296
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	4 cut(s)	9, 110, 390, 408
Eco53kI	GAGCTC	3 cut(s)	7, 108, 388
Eco57I	CTGAAG	1 cut(s)	1063
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	3 cut(s)	7, 108, 388
EcoRI	GAATTC	1 cut(s)	1198
EcoT14I	CCWWGG	3 cut(s)	225, 1096, 1296
EcoT38I	GRGCYC	4 cut(s)	9, 110, 390, 408
ErhI	CCWWGG	3 cut(s)	225, 1096, 1296
FaeI	CATG	5 cut(s)	340, 394, 1300, 1345, 1372
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	5 cut(s)	336, 390, 1296, 1341, 1368
FauNDI	CATATG	1 cut(s)	934
FbaI	TGATCA	1 cut(s)	1321
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	5 cut(s)	150, 616, 784, 787, 1377
FokI	GGATG	3 cut(s)	242, 696, 1414
FriOI	GRGCYC	4 cut(s)	9, 110, 390, 408
Fsp4HI	GCNGC	5 cut(s)	150, 616, 784, 787, 1377
FspBI	CTAG	3 cut(s)	1110, 1364, 1447
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	5 cut(s)	150, 616, 784, 787, 1377
GsaI	CCCAGC	1 cut(s)	1158
HaeII	RGCGCY	1 cut(s)	828
HaeIII	GGCC	4 cut(s)	114, 205, 224, 462
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	827
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	5 cut(s)	340, 394, 1300, 1345, 1372
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HincII	GTYRAC	2 cut(s)	396, 421
HindII	GTYRAC	2 cut(s)	396, 421
HinfI	GANTC	5 cut(s)	133, 524, 755, 1175, 1443
HpaI	GTTAAC	1 cut(s)	396
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	4 cut(s)	991, 1274, 1292, 1321
Hpy166II	GTNNAC	3 cut(s)	396, 421, 427
Hpy188I	TCNGA	7 cut(s)	132, 138, 511, 571, 642, 1082, 1204
Hpy188III	TCNNGA	4 cut(s)	337, 794, 922, 1319
Hpy8I	GTNNAC	3 cut(s)	396, 421, 427
HpyAV	CCTTC	2 cut(s)	112, 800
HpyCH4III	ACNGT	7 cut(s)	28, 418, 487, 694, 1009, 1235, 1421
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	7 cut(s)	354, 516, 576, 618, 1356, 1361, 1376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 459, 1358
HpyF3I	CTNAG	4 cut(s)	137, 207, 363, 732
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	340, 394, 1300, 1345, 1372
HspAI	GCGC	1 cut(s)	825
Ksp22I	TGATCA	1 cut(s)	1321
KspAI	GTTAAC	1 cut(s)	396
Kzo9I	GATC	4 cut(s)	637, 965, 1321, 1344
LmnI	GCTCC	5 cut(s)	4, 12, 26, 105, 113
Lsp1109I	GCAGC	5 cut(s)	136, 602, 773, 795, 1388
LweI	GCATC	2 cut(s)	302, 330
MaeI	CTAG	3 cut(s)	1110, 1364, 1447
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	686, 1012
MalI	GATC	4 cut(s)	639, 967, 1323, 1346
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	4 cut(s)	637, 965, 1321, 1344
MboII	GAAGA	3 cut(s)	1075, 1313, 1397
MflI	RGATCY	1 cut(s)	965
MhlI	GDGCHC	4 cut(s)	9, 110, 390, 408
MlyI	GAGTC	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	207
MseI	TTAA	7 cut(s)	156, 267, 395, 906, 915, 927, 1391
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	786, 1379
MspCI	CTTAAG	2 cut(s)	266, 905
MspI	CCGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	476
MwoI	GCNNNNNNNGC	3 cut(s)	364, 459, 1358
NcoI	CCATGG	1 cut(s)	1296
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	4 cut(s)	637, 965, 1321, 1344
NlaIII	CATG	5 cut(s)	340, 394, 1300, 1345, 1372
NmeAIII	GCCGAG	1 cut(s)	333
PagI	TCATGA	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	224
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	4 cut(s)	133, 524, 1175, 1443
PkrI	GCNGC	5 cut(s)	151, 617, 785, 788, 1378
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
PsiI	TTATAA	2 cut(s)	608, 1020
Psp124BI	GAGCTC	3 cut(s)	9, 110, 390
PspFI	CCCAGC	1 cut(s)	1154
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	1378
PsuI	RGATCY	1 cut(s)	965
PvuII	CAGCTG	2 cut(s)	786, 1379
RsaI	GTAC	3 cut(s)	47, 191, 1145
RsaNI	GTAC	3 cut(s)	46, 190, 1144
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	3 cut(s)	9, 110, 390
SaqAI	TTAA	7 cut(s)	156, 267, 395, 906, 915, 927, 1391
SatI	GCNGC	5 cut(s)	150, 616, 784, 787, 1377
Sau3AI	GATC	4 cut(s)	637, 965, 1321, 1344
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	749
SduI	GDGCHC	4 cut(s)	9, 110, 390, 408
SfaNI	GCATC	2 cut(s)	302, 330
SfcI	CTRYAG	1 cut(s)	1374
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	266, 905
SmoI	CTYRAG	2 cut(s)	266, 905
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	2 cut(s)	19, 55
SspI	AATATT	1 cut(s)	1057
SspMI	CTAG	3 cut(s)	1110, 1364, 1447
SstI	GAGCTC	3 cut(s)	9, 110, 390
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	3 cut(s)	225, 1096, 1296
TaaI	ACNGT	7 cut(s)	28, 418, 487, 694, 1009, 1235, 1421
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	384, 1383
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	4 cut(s)	133, 524, 1175, 1443
Tru1I	TTAA	7 cut(s)	156, 267, 395, 906, 915, 927, 1391
Tru9I	TTAA	7 cut(s)	156, 267, 395, 906, 915, 927, 1391
TscAI	CASTG	2 cut(s)	31, 89
TseI	GCWGC	5 cut(s)	149, 615, 783, 786, 1376
TspDTI	ATGAA	9 cut(s)	84, 325, 512, 516, 572, 888, 969, 1103, 1118
TspGWI	ACGGA	2 cut(s)	80, 118
TspRI	CASTG	2 cut(s)	31, 89
Vha464I	CTTAAG	2 cut(s)	266, 905
XapI	RAATTY	3 cut(s)	623, 875, 1198
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	3 cut(s)	1110, 1364, 1447
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.