Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005816.1

Orthogroup ID

OG0005630

Physical Location & Seq

Genomic Coordinates Forward (+)

115142 .. 117699

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggggaagggctacttgagaatgaagactgactcggtttccggcgatttgatcaatgccgatttcaaagaccttgctgccgctgctaagaagcttgcaaatcatgccgtccacctcggaagcttaggctttggtaccacttttcttgaatggatcgcttcttttgctgcaatttatctgttggtcttggatcggacaaactggaaaacaaacatcctcacagggctgttaatcccgtacatattctttagccttccgtcactaattttctctatcttcaggggagaaattggaagctggattgccttcgttgcggttatcttgcgactctttttccctaaacgattcccagaatgggctgaattgccggctgcgctgattcttctaatggttgtggctccgagtttaattgcaaccactgtgagggatgactggatcggcgttgtaatatgtctcgccattgcagcttacttgctgcaagaacacatccgggcatcgggtggattcagaaaagctttcacacaaccccgtggcgtatcaaacactgtcggcataatttgcctgttcatctaccctgtttgggcgttgaggcagccggcgacccaagccgtcgatgaacccacggccaccgcgactccgacgctagcttcgccagcagccgctcctccaacagaatcagcggcggcctcggaggctcaatctccaacttcgtcctctacaaagaccgcccctaccaatttcgacctctactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016020 GO:0031668 GO:0033554 GO:0033993 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071944 GO:0097305 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WCOR413

Protein Analysis

250

Amino Acids

27.02

Weight (kDa)

8.55

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	8 - 188	1.5e-86	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005630)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15970 AT2G15970
fragaria_vesca	FvH4_2g07440
malus_domestica	MD00G1150100.v1.1 MD10G1085600.v1.1
prunus_persica	Prupe.8G109700_v2.0.a1 Prupe.8G109700_v2.0.a1
pyrus_communis	pycom10g06690
rosa_chinensis	RchiOBHm_Chr6g0261051 RchiOBHm_Chr6g0261111 RchiOBHm_Chr6g0261481
rosa_laevigata	RLG00000014466
rosa_multiflora	Rmu_sc0003337.1_g000030 Rmu_sc0003337.1_g000034 Rmu_sc0003487.1_g000005 Rmu_sc0005816.1_g000032
rosa_roxburghii	Rroxscaffold_7G00207630
rosa_rugosa	Rorug05G0594500 Rorug05G0594600 Rorug05G0594700 Rorug05G0594700
rosa_samantha	Rh6AG114100 Rh6BG107800 Rh6CG104900 Rh6DG095700 Rh6DG095800
rosa_wichuraiana	Rw6G009730 Rw6G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	662
AccII	CGCG	1 cut(s)	632
AciI	CCGC	7 cut(s)	81, 314, 630, 660, 680, 683, 726
AclWI	GGATC	3 cut(s)	161, 198, 443
AcoI	YGGCCR	1 cut(s)	624
AcuI	CTGAAG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	136, 239
AfiI	CCNNNNNNNGG	4 cut(s)	355, 423, 496, 580
AgsI	TTSAA	2 cut(s)	67, 149
AluBI	AGCT	6 cut(s)	94, 123, 297, 467, 515, 647
AluI	AGCT	6 cut(s)	94, 123, 297, 467, 515, 647
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	3 cut(s)	161, 198, 443
AoxI	GGCC	2 cut(s)	624, 684
ApeKI	GCWGC	8 cut(s)	77, 83, 167, 371, 464, 475, 592, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	491
AsuNHI	GCTAGC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	8 cut(s)	64, 70, 154, 358, 462, 476, 604, 668
BceAI	ACGGC	3 cut(s)	92, 593, 639
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	644, 751
BglI	GCCNNNNNGGC	1 cut(s)	692
Bme1390I	CCNGG	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	136, 399
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	503
BmtI	GCTAGC	1 cut(s)	647
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	115, 529, 621, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	4 cut(s)	355, 423, 496, 580
Bse118I	RCCGGY	2 cut(s)	367, 595
Bse1I	ACTGG	2 cut(s)	206, 437
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	4 cut(s)	115, 529, 621, 687
BseGI	GGATG	3 cut(s)	213, 433, 486
BseLI	CCNNNNNNNGG	4 cut(s)	355, 423, 496, 580
BseMI	GCAATG	1 cut(s)	459
BseNI	ACTGG	2 cut(s)	206, 437
BseRI	GAGGAG	1 cut(s)	654
BseXI	GCAGC	8 cut(s)	64, 70, 154, 358, 462, 476, 604, 668
Bsh1236I	CGCG	1 cut(s)	632
BshFI	GGCC	2 cut(s)	626, 686
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	42, 368, 490, 596
BslI	CCNNNNNNNGG	4 cut(s)	355, 423, 496, 580
BsmAI	GTCTC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	626, 686
Bsp143I	GATC	4 cut(s)	51, 153, 190, 435
BspACI	CCGC	7 cut(s)	81, 314, 630, 660, 680, 683, 726
BspANI	GGCC	2 cut(s)	626, 686
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	2 cut(s)	136, 399
BspOI	GCTAGC	1 cut(s)	647
BspPI	GGATC	3 cut(s)	161, 198, 443
BspT107I	GGYRCC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	2 cut(s)	367, 595
BsrI	ACTGG	2 cut(s)	206, 437
BssAI	RCCGGY	2 cut(s)	367, 595
BssECI	CCNNGG	4 cut(s)	115, 529, 621, 687
BssMI	GATC	4 cut(s)	51, 153, 190, 435
Bst4CI	ACNGT	2 cut(s)	421, 547
BstAPI	GCANNNNNTGC	2 cut(s)	104, 558
BstC8I	GCNNGC	5 cut(s)	96, 369, 597, 645, 654
BstDEI	CTNAG	2 cut(s)	87, 124
BstDSI	CCRYGG	2 cut(s)	529, 621
BstF5I	GGATG	3 cut(s)	213, 433, 486
BstFNI	CGCG	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	4 cut(s)	54, 156, 193, 438
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	4 cut(s)	51, 153, 190, 435
BstSCI	CCNGG	1 cut(s)	489
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	8 cut(s)	64, 70, 154, 358, 462, 476, 604, 668
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	626, 686
BtgI	CCRYGG	2 cut(s)	529, 621
BtsCI	GGATG	3 cut(s)	213, 433, 486
BtsIMutI	CAGTG	2 cut(s)	417, 543
Cac8I	GCNNGC	5 cut(s)	96, 369, 597, 645, 654
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	2 cut(s)	367, 595
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	135, 238
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	2 cut(s)	135, 238
DdeI	CTNAG	2 cut(s)	87, 124
DpnI	GATC	4 cut(s)	53, 155, 192, 437
DpnII	GATC	4 cut(s)	51, 153, 190, 435
EaeI	YGGCCR	1 cut(s)	624
Eco57I	CTGAAG	1 cut(s)	262
FaeI	CATG	1 cut(s)	107
FaiI	YATR	4 cut(s)	105, 242, 451, 554
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	51
FokI	GGATG	3 cut(s)	200, 440, 473
FspBI	CTAG	2 cut(s)	644, 751
GlaI	GCGC	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	626, 686
HapII	CCGG	4 cut(s)	42, 368, 490, 596
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HindIII	AAGCTT	3 cut(s)	92, 121, 513
HinfI	GANTC	7 cut(s)	32, 327, 345, 379, 504, 634, 674
HpaII	CCGG	4 cut(s)	42, 368, 490, 596
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	6 cut(s)	119, 195, 402, 509, 639, 691
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	614, 643
HpyAV	CCTTC	2 cut(s)	263, 316
HpyCH4III	ACNGT	2 cut(s)	421, 547
HpyCH4V	TGCA	5 cut(s)	98, 170, 413, 464, 478
HpyF3I	CTNAG	2 cut(s)	87, 124
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	374
KpnI	GGTACC	1 cut(s)	138
KroI	GCCGGC	2 cut(s)	367, 595
KroNI	GCCGGC	2 cut(s)	369, 597
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	51, 153, 190, 435
LmnI	GCTCC	2 cut(s)	403, 667
Lsp1109I	GCAGC	8 cut(s)	64, 70, 154, 358, 462, 476, 604, 668
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	2 cut(s)	644, 751
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	4 cut(s)	53, 155, 192, 437
MbiI	CCGCTC	1 cut(s)	662
MboI	GATC	4 cut(s)	51, 153, 190, 435
MboII	GAAGA	3 cut(s)	37, 268, 374
MluCI	AATT	7 cut(s)	171, 264, 288, 362, 408, 555, 736
MlyI	GAGTC	3 cut(s)	26, 321, 628
MmeI	TCCRAC	3 cut(s)	662, 692, 728
MnlI	CCTC	8 cut(s)	125, 227, 417, 582, 675, 685, 697, 724
MroNI	GCCGGC	2 cut(s)	367, 595
MseI	TTAA	2 cut(s)	230, 407
MspA1I	CMGCKG	2 cut(s)	83, 680
MspI	CCGG	4 cut(s)	42, 368, 490, 596
MspR9I	CCNGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	632
NaeI	GCCGGC	2 cut(s)	369, 597
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	4 cut(s)	51, 153, 190, 435
NgoMIV	GCCGGC	2 cut(s)	367, 595
NheI	GCTAGC	1 cut(s)	643
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	136, 399
NmuCI	GTSAC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	629
PdiI	GCCGGC	2 cut(s)	369, 597
PfeI	GAWTC	4 cut(s)	345, 379, 504, 674
PleI	GAGTC	3 cut(s)	26, 321, 628
PpsI	GAGTC	3 cut(s)	26, 321, 628
PspN4I	GGNNCC	2 cut(s)	136, 399
RsaI	GTAC	2 cut(s)	136, 239
RsaNI	GTAC	2 cut(s)	135, 238
SaqAI	TTAA	2 cut(s)	230, 407
Sau3AI	GATC	4 cut(s)	51, 153, 190, 435
SchI	GAGTC	3 cut(s)	26, 321, 628
ScrFI	CCNGG	1 cut(s)	491
SetI	ASST	9 cut(s)	75, 96, 117, 125, 299, 469, 517, 649, 747
SfaNI	GCATC	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	7 cut(s)	171, 264, 288, 362, 408, 555, 736
SsiI	CCGC	7 cut(s)	81, 314, 630, 660, 680, 683, 726
SspMI	CTAG	2 cut(s)	644, 751
StyD4I	CCNGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	421, 547
TaqI	TCGA	2 cut(s)	612, 741
TasI	AATT	7 cut(s)	171, 264, 288, 362, 408, 555, 736
TauI	GCSGC	4 cut(s)	83, 662, 683, 686
TfiI	GAWTC	4 cut(s)	345, 379, 504, 674
Tru1I	TTAA	2 cut(s)	230, 407
Tru9I	TTAA	2 cut(s)	230, 407
TscAI	CASTG	2 cut(s)	424, 550
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	8 cut(s)	77, 83, 167, 371, 464, 475, 592, 656
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	3 cut(s)	38, 556, 630
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	424, 550
XspI	CTAG	2 cut(s)	644, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.