Rmu_sc0006076.1_g000012

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006076.1
OG0017128
Physical Location & Seq
Forward (+)
55211 .. 58174
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1047 bp
atggggtgcccagaattgggtgaggtgttagtgttggtgagcagagtctggtggatttggtttatgaaatgggggagtttgagtgcatttcaagggaaggctgctaagctcagccaagcacgaaatcaaagtctccaactttgggcatttttgatttacctcagtgatgcaagtgactgttcaacaggaggtgtagaaacagtgtcacacagtctggaagttgaagccttttccaaaggctcaaagcgatcaattatggccttggccattgcctcttctgctctctcaagcttcccaaccagggaagtgccttggaaatattccccaggattaagagtcacaacatgtatgctagggagaaatagtacacgtgttggagcaagcaaaggggtgtcaagtgtttgtgaaccactccctccagatagaccattgtggtttcctggtagttcacctcctgagtggcttgatggcagccttcccggtgattttggcttcgacccccttggattagggtctgatccagaattactaaaatggtttgcacaagctgaactgatgcatggcagatgggcaatgcttgcagtagcaggaattctgattccagagtggcttgaaagactaggcttcctagagaacttctcatggtttgaggcaggtgaaagagaatactttgcagacccaacaaccttgtttttggtgcaattagcactaatgggttgggttgaaggtagaagatgggcagatatgcttaatcctgggagtgtttccattgagcctaaaatgcctcataaaaagatccccaaggcagatgtcgggtacccgggtgggctcttttttgacccgatcatgtggggaagaggatctcctgagcctgtgatggtgttgagaacaaaggagatcaagaatgggcgtcttgcaatgttggcctttgtagggttcttgttccaagccatttacactgggaaagaccccattgagaacttgatggatcatcttgcagatcctggtcacgttaacgtattttcggctttcacttcacaatactag

Protein Analysis

348

Amino Acids

38.54

Weight (kDa)

5.82

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 151 - 317 1.3e-52 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017128)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19150
fragaria_vesca FvH4_1g09040 FvH4_1g09040
malus_domestica MD02G1095600.v1.1
prunus_persica Prupe.7G195500_v2.0.a1
pyrus_communis pycom02g07570
rosa_chinensis RchiOBHm_Chr2g0095461
rosa_laevigata RLG00000016569
rosa_multiflora Rmu_sc0006076.1_g000012
rosa_roxburghii Rroxscaffold_2G00146320
rosa_rugosa Rorug02G0051300
rosa_samantha Rh2DG100200
rosa_wichuraiana Rw2G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 644
Acc65I GGTACC 1 cut(s) 816
AccB1I GGYRCC 2 cut(s) 6, 816
AclWI GGATC 5 cut(s) 512, 790, 868, 995, 996
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 591
AcvI CACGTG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 910
AfaI GTAC 2 cut(s) 367, 818
AfiI CCNNNNNNNGG 5 cut(s) 16, 17, 142, 301, 933
AflIII ACRYGT 3 cut(s) 344, 368, 370
AgsI TTSAA 5 cut(s) 92, 183, 224, 614, 725
AjnI CCWGG 5 cut(s) 299, 325, 439, 754, 1003
AluBI AGCT 3 cut(s) 109, 291, 548
AluI AGCT 3 cut(s) 109, 291, 548
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 5 cut(s) 512, 790, 868, 995, 996
AlwNI CAGNNNCTG 2 cut(s) 48, 1004
Ama87I CYCGRG 1 cut(s) 820
AoxI GGCC 3 cut(s) 258, 264, 924
ApeKI GCWGC 2 cut(s) 101, 471
ApoI RAATTY 1 cut(s) 591
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
Asp718I GGTACC 1 cut(s) 816
AsuC2I CCSGG 3 cut(s) 480, 821, 822
AsuHPI GGTGA 5 cut(s) 32, 49, 441, 494, 668
AvaI CYCGRG 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 11
BaeI ACNNNNGTAYC 2 cut(s) 808, 841
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 2 cut(s) 6, 816
BanII GRGCYC 1 cut(s) 831
BbrPI CACGTG 1 cut(s) 371
BbvI GCAGC 2 cut(s) 88, 483
BccI CCATC 5 cut(s) 461, 561, 729, 871, 979
BciT130I CCWGG 5 cut(s) 301, 327, 441, 756, 1005
BcnI CCSGG 3 cut(s) 480, 821, 822
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 4 cut(s) 353, 620, 629, 1045
BfuAI ACCTGC 1 cut(s) 644
BisI GCNGC 2 cut(s) 102, 472
BlpI GCTNAGC 2 cut(s) 105, 110
BlsI GCNGC 2 cut(s) 103, 473
Bme1390I CCNGG 8 cut(s) 301, 327, 441, 480, 756, 821, 822, 1005
BmeT110I CYCGRG 1 cut(s) 820
BmiI GGNNCC 2 cut(s) 8, 818
BmrFI CCNGG 8 cut(s) 301, 327, 441, 480, 756, 821, 822, 1005
BmrI ACTGGG 1 cut(s) 969
BmsI GCATC 2 cut(s) 157, 546
BmuI ACTGGG 1 cut(s) 969
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 867
Bpu1102I GCTNAGC 2 cut(s) 105, 110
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 3 cut(s) 480, 821, 822
BsaAI YACGTR 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 910
BsaJI CCNNGG 8 cut(s) 261, 300, 311, 325, 502, 755, 801, 820
BsaXI ACNNNNNCTCC 4 cut(s) 67, 97, 349, 379
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 17, 142, 301, 933
Bse1I ACTGG 1 cut(s) 964
Bse3DI GCAATG 3 cut(s) 267, 579, 924
BseBI CCWGG 5 cut(s) 301, 327, 441, 756, 1005
BseDI CCNNGG 8 cut(s) 261, 300, 311, 325, 502, 755, 801, 820
BseLI CCNNNNNNNGG 5 cut(s) 16, 17, 142, 301, 933
BseMI GCAATG 3 cut(s) 267, 579, 924
BseMII CTCAG 4 cut(s) 124, 175, 447, 858
BseNI ACTGG 1 cut(s) 964
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 2 cut(s) 88, 483
BshFI GGCC 3 cut(s) 260, 266, 926
BshNI GGYRCC 2 cut(s) 6, 816
BsiHKCI CYCGRG 1 cut(s) 820
BsiSI CCGG 2 cut(s) 480, 821
BslI CCNNNNNNNGG 5 cut(s) 16, 17, 142, 301, 933
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 3 cut(s) 260, 266, 926
BsoBI CYCGRG 1 cut(s) 820
Bsp1286I GDGCHC 2 cut(s) 11, 831
Bsp143I GATC 8 cut(s) 248, 517, 795, 843, 860, 897, 988, 1000
Bsp1720I GCTNAGC 2 cut(s) 105, 110
BspANI GGCC 3 cut(s) 260, 266, 926
BspCNI CTCAG 4 cut(s) 123, 174, 448, 859
BspLI GGNNCC 2 cut(s) 8, 818
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 5 cut(s) 512, 790, 868, 995, 996
BspT107I GGYRCC 2 cut(s) 6, 816
BsrDI GCAATG 3 cut(s) 267, 579, 924
BsrI ACTGG 1 cut(s) 964
BssECI CCNNGG 8 cut(s) 261, 300, 311, 325, 502, 755, 801, 820
BssMI GATC 8 cut(s) 248, 517, 795, 843, 860, 897, 988, 1000
BssNI GRCGYC 1 cut(s) 910
BssT1I CCWWGG 4 cut(s) 261, 311, 502, 801
Bst2UI CCWGG 5 cut(s) 301, 327, 441, 756, 1005
Bst4CI ACNGT 3 cut(s) 179, 202, 212
Bst6I CTCTTC 2 cut(s) 280, 850
BstACI GRCGYC 1 cut(s) 910
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 2 cut(s) 382, 579
BstDEI CTNAG 5 cut(s) 105, 110, 161, 456, 867
BstKTI GATC 8 cut(s) 251, 520, 798, 846, 863, 900, 991, 1003
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 8 cut(s) 248, 517, 795, 843, 860, 897, 988, 1000
BstMWI GCNNNNNNNGC 4 cut(s) 278, 578, 781, 923
BstNI CCWGG 5 cut(s) 301, 327, 441, 756, 1005
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 8 cut(s) 299, 325, 439, 478, 754, 819, 820, 1003
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 88, 483
BstX2I RGATCY 3 cut(s) 795, 860, 1000
BstYI RGATCY 3 cut(s) 795, 860, 1000
BsuRI GGCC 3 cut(s) 260, 266, 926
BtsIMutI CAGTG 3 cut(s) 169, 207, 957
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 2 cut(s) 382, 579
CaiI CAGNNNCTG 2 cut(s) 48, 1004
Cfr9I CCCGGG 1 cut(s) 820
CseI GACGC 1 cut(s) 899
Csp6I GTAC 2 cut(s) 366, 817
CviAII CATG 4 cut(s) 345, 560, 642, 847
CviQI GTAC 2 cut(s) 366, 817
DdeI CTNAG 5 cut(s) 105, 110, 161, 456, 867
DpnI GATC 8 cut(s) 250, 519, 797, 845, 862, 899, 990, 1002
DpnII GATC 8 cut(s) 248, 517, 795, 843, 860, 897, 988, 1000
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 280, 850
EarI CTCTTC 2 cut(s) 280, 850
Eco130I CCWWGG 4 cut(s) 261, 311, 502, 801
Eco24I GRGCYC 1 cut(s) 831
Eco72I CACGTG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 820
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 5 cut(s) 299, 325, 439, 754, 1003
EcoT14I CCWWGG 4 cut(s) 261, 311, 502, 801
EcoT22I ATGCAT 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 831
ErhI CCWWGG 4 cut(s) 261, 311, 502, 801
FaeI CATG 4 cut(s) 348, 563, 645, 850
FaiI YATR 9 cut(s) 65, 257, 346, 350, 561, 643, 746, 789, 848
FatI CATG 4 cut(s) 344, 559, 641, 846
Fnu4HI GCNGC 2 cut(s) 102, 472
FriOI GRGCYC 1 cut(s) 831
Fsp4HI GCNGC 2 cut(s) 102, 472
FspBI CTAG 4 cut(s) 353, 620, 629, 1045
GluI GCNGC 2 cut(s) 102, 472
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 3 cut(s) 260, 266, 926
HapII CCGG 2 cut(s) 480, 821
HgaI GACGC 1 cut(s) 899
Hin1I GRCGYC 1 cut(s) 910
Hin1II CATG 4 cut(s) 348, 563, 645, 850
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HindIII AAGCTT 1 cut(s) 289
HinfI GANTC 3 cut(s) 45, 336, 598
HpaI GTTAAC 1 cut(s) 1015
HpaII CCGG 2 cut(s) 480, 821
HphI GGTGA 5 cut(s) 32, 49, 441, 494, 668
Hpy166II GTNNAC 4 cut(s) 368, 407, 449, 1015
Hpy188I TCNGA 2 cut(s) 517, 597
Hpy188III TCNNGA 7 cut(s) 215, 419, 455, 521, 602, 866, 901
Hpy8I GTNNAC 4 cut(s) 368, 407, 449, 1015
HpyAV CCTTC 3 cut(s) 91, 485, 719
HpyCH4III ACNGT 3 cut(s) 179, 202, 212
HpyCH4IV ACGT 3 cut(s) 370, 1011, 1017
HpyCH4V TGCA 9 cut(s) 86, 170, 542, 559, 581, 674, 700, 917, 998
HpyF10VI GCNNNNNNNGC 4 cut(s) 278, 578, 781, 923
HpyF3I CTNAG 5 cut(s) 105, 110, 161, 456, 867
HpySE526I ACGT 3 cut(s) 370, 1011, 1017
Hsp92I GRCGYC 1 cut(s) 910
Hsp92II CATG 4 cut(s) 348, 563, 645, 850
KpnI GGTACC 1 cut(s) 820
KspAI GTTAAC 1 cut(s) 1015
Kzo9I GATC 8 cut(s) 248, 517, 795, 843, 860, 897, 988, 1000
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 2 cut(s) 88, 483
LweI GCATC 2 cut(s) 157, 546
MaeI CTAG 4 cut(s) 353, 620, 629, 1045
MaeII ACGT 3 cut(s) 370, 1011, 1017
MaeIII GTNAC 4 cut(s) 173, 204, 337, 1007
MalI GATC 8 cut(s) 250, 519, 797, 845, 862, 899, 990, 1002
MboI GATC 8 cut(s) 248, 517, 795, 843, 860, 897, 988, 1000
MboII GAAGA 3 cut(s) 267, 744, 867
MflI RGATCY 3 cut(s) 795, 860, 1000
MhlI GDGCHC 2 cut(s) 11, 831
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 5 cut(s) 14, 252, 524, 591, 701
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 2 cut(s) 54, 345
MmeI TCCRAC 2 cut(s) 160, 355
MnlI CCTC 9 cut(s) 16, 170, 182, 283, 426, 462, 643, 795, 851
Mox20I TGGCCA 1 cut(s) 266
Mph1103I ATGCAT 1 cut(s) 561
MscI TGGCCA 1 cut(s) 266
MseI TTAA 3 cut(s) 332, 750, 1014
Msp20I TGGCCA 1 cut(s) 266
MspI CCGG 2 cut(s) 480, 821
MspR9I CCNGG 8 cut(s) 301, 327, 441, 480, 756, 821, 822, 1005
MvaI CCWGG 5 cut(s) 301, 327, 441, 756, 1005
MwoI GCNNNNNNNGC 4 cut(s) 278, 578, 781, 923
NciI CCSGG 3 cut(s) 480, 821, 822
NdeII GATC 8 cut(s) 248, 517, 795, 843, 860, 897, 988, 1000
NlaIII CATG 4 cut(s) 348, 563, 645, 850
NlaIV GGNNCC 2 cut(s) 8, 818
NmuCI GTSAC 4 cut(s) 173, 204, 337, 1007
NsiI ATGCAT 1 cut(s) 561
NspI RCATGY 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 644
PciI ACATGT 1 cut(s) 344
PfeI GAWTC 1 cut(s) 598
PkrI GCNGC 2 cut(s) 103, 473
PleI GAGTC 2 cut(s) 53, 344
PmaCI CACGTG 1 cut(s) 371
PmlI CACGTG 1 cut(s) 371
PpsI GAGTC 2 cut(s) 53, 344
Ppu21I YACGTR 1 cut(s) 371
PscI ACATGT 1 cut(s) 344
Psp6I CCWGG 5 cut(s) 299, 325, 439, 754, 1003
PspCI CACGTG 1 cut(s) 371
PspGI CCWGG 5 cut(s) 299, 325, 439, 754, 1003
PspN4I GGNNCC 2 cut(s) 8, 818
PstNI CAGNNNCTG 2 cut(s) 48, 1004
PsuI RGATCY 3 cut(s) 795, 860, 1000
RsaI GTAC 2 cut(s) 367, 818
RsaNI GTAC 2 cut(s) 366, 817
SaqAI TTAA 3 cut(s) 332, 750, 1014
SatI GCNGC 2 cut(s) 102, 472
Sau3AI GATC 8 cut(s) 248, 517, 795, 843, 860, 897, 988, 1000
SchI GAGTC 2 cut(s) 54, 345
ScrFI CCNGG 8 cut(s) 301, 327, 441, 480, 756, 821, 822, 1005
SduI GDGCHC 2 cut(s) 11, 831
SfaNI GCATC 2 cut(s) 157, 546
SmaI CCCGGG 1 cut(s) 822
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 5 cut(s) 14, 252, 524, 591, 701
SspI AATATT 1 cut(s) 320
SspMI CTAG 4 cut(s) 353, 620, 629, 1045
StyD4I CCNGG 8 cut(s) 299, 325, 439, 478, 754, 819, 820, 1003
StyI CCWWGG 4 cut(s) 261, 311, 502, 801
TaaI ACNGT 3 cut(s) 179, 202, 212
TaiI ACGT 3 cut(s) 373, 1014, 1020
TaqI TCGA 1 cut(s) 495
TasI AATT 5 cut(s) 14, 252, 524, 591, 701
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 1 cut(s) 598
Tru1I TTAA 3 cut(s) 332, 750, 1014
Tru9I TTAA 3 cut(s) 332, 750, 1014
TscAI CASTG 3 cut(s) 169, 207, 964
TseFI GTSAC 4 cut(s) 173, 204, 337, 1007
TseI GCWGC 2 cut(s) 101, 471
Tsp45I GTSAC 4 cut(s) 173, 204, 337, 1007
TspDTI ATGAA 1 cut(s) 80
TspMI CCCGGG 1 cut(s) 820
TspRI CASTG 3 cut(s) 169, 207, 964
XapI RAATTY 1 cut(s) 591
XceI RCATGY 1 cut(s) 348
XmaI CCCGGG 1 cut(s) 820
XspI CTAG 4 cut(s) 353, 620, 629, 1045
Zsp2I ATGCAT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.