Rmu_sc0006098.1_g000003

importin subunit beta-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006098.1
OG0016981
Physical Location & Seq
Reverse (-)
1547 .. 2507
961 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
atgaggactgctgcatttggagcattgaatgaagttgtaaagtgctgcatcaatgagattgctccaatggtgatgcacttagttccaattattatgaatgaactccaccagactcttgaaggacagaggccttcaattgatgaaagagacaagcaaaatgaactgcaaggccttctttgtggttgcttgcaggtcatcatacagaagcttagggtcacacagattgtccacattaatagggctgcaaacatttgtcgtgagcactgcacagtgggagttgattactttttgcaagctgcaactctacaagaattggtacaagtttccagtgatcagatttctttatataagctcttggttgacatcatgcttcttagtcttgggtgccttatgaaggctttggctttgcttcttggtgaatattttgaaatgctgcatgctgcacccattgcttccttgacagttgtaaaatttgtgaggagcaccacaacaatagtgatgatacagttggtgattaatgtcatgaacccatcgtttctacttgtgaagaggatcattgctacggctgcatattcagctccacttgctgctttccagactttagatgacaactatatttctattgcgaaagttggtgtttacaatgctcatgaagaagttggtagcgctctttgttttctagctaccattactacaggcatgaaggcatgccttattttaggggggcagaattgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

245

Amino Acids

26.86

Weight (kDa)

6.29

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IMB1 PF25574 1 - 71 8.8e-11 Importin subunit beta-1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 384
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 1 cut(s) 470
AfaI GTAC 1 cut(s) 318
AfeI AGCGCT 1 cut(s) 667
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 4 cut(s) 28, 119, 135, 428
AluBI AGCT 5 cut(s) 208, 296, 352, 578, 683
AluI AGCT 5 cut(s) 208, 296, 352, 578, 683
Alw21I GWGCWC 2 cut(s) 264, 485
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 560
Aor51HI AGCGCT 1 cut(s) 667
AoxI GGCC 2 cut(s) 128, 169
ApeKI GCWGC 8 cut(s) 11, 45, 242, 296, 433, 440, 566, 587
ApoI RAATTY 1 cut(s) 470
AseI ATTAAT 2 cut(s) 234, 516
AspLEI GCGC 1 cut(s) 668
AsuHPI GGTGA 3 cut(s) 82, 428, 523
BanI GGYRCC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 264, 485
BbvI GCAGC 7 cut(s) 32, 229, 283, 420, 427, 553, 574
BccI CCATC 1 cut(s) 538
BceAI ACGGC 1 cut(s) 579
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 680
BfmI CTRYAG 1 cut(s) 693
BfoI RGCGCY 1 cut(s) 669
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
BlsI GCNGC 8 cut(s) 13, 47, 244, 298, 435, 442, 568, 589
BmiI GGNNCC 1 cut(s) 386
BmsI GCATC 2 cut(s) 57, 63
Bpu10I CCTNAGC 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 2 cut(s) 447, 555
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 2 cut(s) 447, 555
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 493
BseXI GCAGC 7 cut(s) 32, 229, 283, 420, 427, 553, 574
BsgI GTGCAG 2 cut(s) 250, 426
BshFI GGCC 2 cut(s) 130, 171
BshNI GGYRCC 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 264, 485
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 2 cut(s) 130, 171
Bsp1286I GDGCHC 2 cut(s) 264, 485
Bsp143I GATC 2 cut(s) 331, 552
BspANI GGCC 2 cut(s) 130, 171
BspHI TCATGA 2 cut(s) 522, 649
BspLI GGNNCC 1 cut(s) 386
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 447, 555
BsrI ACTGG 1 cut(s) 327
BssMI GATC 2 cut(s) 331, 552
Bst4CI ACNGT 3 cut(s) 271, 463, 507
Bst6I CTCTTC 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 4 cut(s) 188, 294, 438, 709
BstDEI CTNAG 3 cut(s) 79, 209, 374
BstENI CCTNNNNNAGG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 2 cut(s) 334, 555
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 331, 552
BstMWI GCNNNNNNNGC 5 cut(s) 20, 449, 566, 575, 584
BstNSI RCATGY 2 cut(s) 440, 711
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 7 cut(s) 32, 229, 283, 420, 427, 553, 574
BsuRI GGCC 2 cut(s) 130, 171
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 3 cut(s) 262, 276, 334
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 4 cut(s) 188, 294, 438, 709
CciI TCATGA 2 cut(s) 522, 649
CfoI GCGC 1 cut(s) 668
Csp6I GTAC 1 cut(s) 317
CviAII CATG 6 cut(s) 367, 437, 523, 650, 700, 708
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 3 cut(s) 79, 209, 374
DpnI GATC 2 cut(s) 333, 554
DpnII GATC 2 cut(s) 331, 552
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Eco147I AGGCCT 2 cut(s) 130, 171
Eco47III AGCGCT 1 cut(s) 667
EcoNI CCTNNNNNAGG 1 cut(s) 392
FaeI CATG 6 cut(s) 370, 440, 526, 653, 703, 711
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 6 cut(s) 366, 436, 522, 649, 699, 707
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
Fsp4HI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
FspBI CTAG 1 cut(s) 680
GlaI GCGC 1 cut(s) 667
GluI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 2 cut(s) 130, 171
HhaI GCGC 1 cut(s) 668
Hin1II CATG 6 cut(s) 370, 440, 526, 653, 703, 711
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 1 cut(s) 112
HphI GGTGA 3 cut(s) 82, 428, 523
Hpy166II GTNNAC 3 cut(s) 229, 361, 640
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 5 cut(s) 116, 257, 523, 595, 650
Hpy8I GTNNAC 3 cut(s) 229, 361, 640
HpyAV CCTTC 5 cut(s) 113, 141, 182, 388, 697
HpyCH4III ACNGT 3 cut(s) 271, 463, 507
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 449, 566, 575, 584
HpyF3I CTNAG 3 cut(s) 79, 209, 374
Hsp92II CATG 6 cut(s) 370, 440, 526, 653, 703, 711
HspAI GCGC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 331, 552
LmnI GCTCC 4 cut(s) 20, 67, 480, 583
LpnPI CCDG 5 cut(s) 122, 176, 340, 608, 681
Lsp1109I GCAGC 7 cut(s) 32, 229, 283, 420, 427, 553, 574
LweI GCATC 2 cut(s) 57, 63
MaeI CTAG 1 cut(s) 680
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 333, 554
MboI GATC 2 cut(s) 331, 552
MboII GAAGA 2 cut(s) 559, 665
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 264, 485
MluCI AATT 5 cut(s) 87, 135, 311, 470, 730
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 3 cut(s) 120, 471, 543
MseI TTAA 2 cut(s) 234, 516
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 5 cut(s) 20, 449, 566, 575, 584
NdeII GATC 2 cut(s) 331, 552
NlaIII CATG 6 cut(s) 370, 440, 526, 653, 703, 711
NlaIV GGNNCC 1 cut(s) 386
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 2 cut(s) 440, 711
PaeI GCATGC 2 cut(s) 440, 711
PagI TCATGA 2 cut(s) 522, 649
PceI AGGCCT 2 cut(s) 130, 171
PkrI GCNGC 8 cut(s) 13, 47, 244, 298, 435, 442, 568, 589
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PshBI ATTAAT 2 cut(s) 234, 516
PspN4I GGNNCC 1 cut(s) 386
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 234, 516
SatI GCNGC 8 cut(s) 12, 46, 243, 297, 434, 441, 567, 588
Sau3AI GATC 2 cut(s) 331, 552
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 2 cut(s) 264, 485
SetI ASST 6 cut(s) 195, 210, 298, 354, 580, 685
SfaNI GCATC 2 cut(s) 57, 63
SfcI CTRYAG 1 cut(s) 693
SphI GCATGC 2 cut(s) 440, 711
Sse9I AATT 5 cut(s) 87, 135, 311, 470, 730
SseBI AGGCCT 2 cut(s) 130, 171
SspI AATATT 1 cut(s) 422
SspMI CTAG 1 cut(s) 680
StuI AGGCCT 2 cut(s) 130, 171
TaaI ACNGT 3 cut(s) 271, 463, 507
TasI AATT 5 cut(s) 87, 135, 311, 470, 730
Tru1I TTAA 2 cut(s) 234, 516
Tru9I TTAA 2 cut(s) 234, 516
TscAI CASTG 3 cut(s) 269, 276, 334
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 8 cut(s) 11, 45, 242, 296, 433, 440, 566, 587
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 9 cut(s) 45, 110, 114, 156, 174, 407, 539, 666, 716
TspRI CASTG 3 cut(s) 269, 276, 334
VspI ATTAAT 2 cut(s) 234, 516
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 1 cut(s) 470
XceI RCATGY 2 cut(s) 440, 711
XspI CTAG 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.