Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006153.1

Orthogroup ID

OG0009569

Physical Location & Seq

Genomic Coordinates Forward (+)

25504 .. 31153

Gene Structure 5650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3321 bp

atggttcacagtgcctacgattctgtggagctcatctccgactgccccaccaagatcgaagccatcgaatcgtacggccctaagctcctcctcggctgctccgatggatccctcagaatctacgctccagattcctccggctcccgctccccaccctccgactaccacactcaatccctccaaaaggaaccctactccctggagagaaacatcaccgggttctctaagaagccgctgctctctatggaggtcttggaatccagagagctccttttgtccctctccgaaacgatatcgtttcacggcctcccgaatttgggcaccatcgccgtgatcaccaaggccaagggcgccaatgtgtactcctgggacgaccgccgcggattcctgtgcttcgccaggcagaagaaagtctgtattttccgacacgacggtggaagaggtttcgtggaggtgaaggaattcggagttccggatgtggtgaagtctatgtcatggtgcggagagaatatatgtatagggattaggagagattatatgatactcaattctacaactggtgcattgactgatgtgtttccttcggggaggctggctccgccgctggtggttcctcttccttccggggagcttcttctcggcaaggataacattggggtttttgtggaccaaaatgggaaacttgctcatgaaggcagggtttgttggtctgaggcgcctacggttgttgttattcagaaggcctatggaatagctctgttgtcgagatatgttgaggttcggtccctacgagcgccatatccattgatacaaacggttgttcttcgaaatgctcgtcgtcttctccaaagcaacaatgctgctattgttgcattagactatgctgtttatggtctcttccctgtccctcttggtgcccagattgtgcaattaacagcatctggcgagtttgaggaagctttgtcattatgtaagctgcttccgcctgaagaagcaagccttagagctgcaaaggaggcttcaatccatataagatgcgctcaccatcgttttgatactggggactatgaggatgccatggagcatttcgtggcatctcaagtagatataacctatgtactttctatgtatccttctattgttcttcctaagacaaccatgatatccgatccagacaaactgatggatatatctggggactcatcatatctctcaagaggttcatctggtatgtcagatgatatggaaccctctgcactgtcacatgtgctggaatcagaggagagtgcagcacttgagtccaaaaaaatgagccataacactctcatggctctcattaagttcttgcagaaaaagagattcagcataattgaaaaagctactgctgaggggacagaagaggttgttttggatgctgttggagacaaattcgcatcccatgagtctaataggtataagaagacaaacaaggggcgtggcagcattccagttacctcccgtgctagggagatggcagctatactggatacagccctacttcaagctctacttcttactggacagtcttcagcggccgtggaattactgaaaggtcttaattactgtgatgtaaaaatatgcgaggagattctcctaaaaagtaatcatcatgctgctttgttagaactttacaagtgcaattcaatgcaccatgaagctctaaaacttttgcatcagttagtagcatcccatgagtctaataggtataagaagacaaacaaggggcgtggcagcattccagttacctcccgtgctagggagatggcagctatactggatacagccctacttcaagctttacttcttactggacagtcttcagcggctgtggaattactgaaaggtcttaattactgtgatgtaaaaatatgcgaggagattctcctaaaaagtaatcatcatgctgctttgttagaactttacaagtgcaattcaatgcaccatgaagctctaaaacttttgcatcagttagtagaagagtcaaaatctaatcaagtgcaacctgaggtgatccaaaagataaagccggagtcaattgttgaatatctcaagcctctttgtggcactgatcccatactcgtcttggagtattcaatgcttgtccttgaaagttgcccaacgcagacaattgagctctttttgaatggaaatattccagctgatttggtaaactcttatttgaagcagcatgctccaaacatgcaggccagatacttggaacttatgcttgctatggatgaaaatgggatatccgggaatctgcaaaatgaaatggtaaatatctatctatcagaagtccttgactggtatgcagatttaagtgctcagcagaaatgggaggagcagacttactccatgacgagaaagaaattattgtctgctttagagagtatatcaggttatagtccagaggctttgctgaaacgtcttccgtctgatgctttatatgaagagcgtgcaattttgctgggcaaaatgaaccaacatgagcttgccttatccctatatgttcacaagcttcatcttcctgagatggcactgtcctattgtgatcgggtgtatgattcgttggcgcatcaaccgtcttcaagatcttctggcaatatataccttactctattgcaaatttatcttaatccgaagagaacaaccaagaactttgagaagcggattacgaatttggtatcaccgcagaacataggaacaccaaaggttggttctgcaaatacagttaaaagtaaaggaggtcgcggagctaagaaaattgctgcaatagaggtggcagatgacataagagtcggtcaaagtggcactgacagtagcaggagtgatggagatgcagatgcagatgcagacgagtctggtgaggaaggagggtcagcaatcatgcttgatgaggttcttgatttgttgagcagaaggtgggacagaataaatggagctcaagctctcaaacttttgccaagggagactaaactacagaacatgcttccgtttatgggacctcttttgagaaaatccagtgaagcttacaggaacctttcagtgataaaaagtttaagacaaagcgataacctgcaggttaaagaagaactctacgaaaaaaggaaaggggtggtaaagatcacgagtgacagcatgtgctccctctgcagaaagaaaatagggacaagtgtttttgctgtgtatccgaatgggagtacaatagtgcattttgtttgcttcagagactcccagagtatgaaagccgtgggcagaggatcacccttaaagaagcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006906 GO:0006914 GO:0006996 GO:0007033 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008333 GO:0009056 GO:0009506 GO:0009705 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0030054 GO:0030897 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032991 GO:0034058 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0061919 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:0098876 GO:0099023 GO:1902774 GO:1990126

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

CNH Clathrin Vps39_1 Vps39_2

Protein Analysis

1106

Amino Acids

122.35

Weight (kDa)

7.0

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNH	PF00780	28 - 281	2.8e-20	CNH domain
Vps39_1	PF10366	508 - 585	3.5e-17	Vacuolar sorting protein 39 domain 1
Clathrin	PF00637	602 - 696	2.6e-06	Region in Clathrin and VPS
Vps39_1	PF10366	605 - 715	1.6e-24	Vacuolar sorting protein 39 domain 1
zf-Vps39_C	PF10367	1052 - 1090	1.5e-17	Vacuolar sorting protein 39 C-terminal zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36630 AT4G36630
fragaria_vesca	FvH4_1g13311
malus_domestica	MD02G1147600.v1.1 MD15G1261900.v1.1
prunus_persica	Prupe.7G154500_v2.0.a1
pyrus_communis	pycom02g11660 pycom15g22910
rosa_chinensis	RchiOBHm_Chr2g0101111 RchiOBHm_Chr2g0101581
rosa_laevigata	RLG00000017092
rosa_multiflora	Rmu_sc0006153.1_g000006 Rmu_sc0019613.1_g000003
rosa_roxburghii	Rroxscaffold_2G00141170
rosa_rugosa	Rorug02G0097300 Rorug02G0100900
rosa_samantha	Rh2AG148200 Rh2BG153600 Rh2CG149800 Rh2CG153900 Rh2DG153900
rosa_wichuraiana	Rw2G011560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2834
Acc36I	ACCTGC	2 cut(s)	3109, 3123
AccB1I	GGYRCC	4 cut(s)	320, 350, 715, 914
AccB7I	CCANNNNNTGG	1 cut(s)	2753
AccBSI	CCGCTC	1 cut(s)	147
AccII	CGCG	2 cut(s)	381, 2790
AccIII	TCCGGA	1 cut(s)	472
AclWI	GGATC	6 cut(s)	102, 115, 1163, 2044, 2102, 3307
AcoI	YGGCCR	1 cut(s)	1572
AcsI	RAATTY	5 cut(s)	313, 461, 1427, 2664, 2716
AcuI	CTGAAG	4 cut(s)	1008, 1551, 1842, 3247
AcyI	GRCGYC	2 cut(s)	351, 716
AfaI	GTAC	4 cut(s)	74, 362, 1119, 3241
AflIII	ACRYGT	1 cut(s)	1264
AjnI	CCWGG	3 cut(s)	198, 365, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	2740, 2772
AleI	CACNNNNGTG	1 cut(s)	432
Alw21I	GWGCWC	6 cut(s)	33, 270, 2175, 2365, 2983, 3185
Alw26I	GTCTC	4 cut(s)	899, 1416, 3002, 3261
AlwI	GGATC	6 cut(s)	102, 115, 1163, 2044, 2102, 3307
AlwNI	CAGNNNCTG	2 cut(s)	941, 1865
Aor13HI	TCCGGA	1 cut(s)	472
AoxI	GGCC	6 cut(s)	76, 304, 342, 741, 1572, 2244
ApoI	RAATTY	5 cut(s)	313, 461, 1427, 2664, 2716
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
Asp700I	GAANNNNTTC	1 cut(s)	461
AspLEI	GCGC	5 cut(s)	353, 718, 796, 1040, 2614
AspS9I	GGNCC	4 cut(s)	77, 667, 783, 3041
AsuC2I	CCSGG	3 cut(s)	217, 625, 2293
AsuHPI	GGTGA	9 cut(s)	205, 328, 466, 493, 1034, 2059, 2718, 2915, 3294
AsuII	TTCGAA	1 cut(s)	826
AvaII	GGWCC	3 cut(s)	667, 783, 3041
AxyI	CCTNAGG	1 cut(s)	2043
BaeGI	GKGCMC	2 cut(s)	323, 919
BamHI	GGATCC	1 cut(s)	107
BanI	GGYRCC	4 cut(s)	320, 350, 715, 914
BanII	GRGCYC	4 cut(s)	33, 270, 2175, 2983
BauI	CACGAG	1 cut(s)	3166
BbsI	GAAGAC	7 cut(s)	833, 1466, 1557, 1757, 1848, 2459, 2616
Bbv12I	GWGCWC	6 cut(s)	33, 270, 2175, 2365, 2983, 3185
BbvCI	CCTCAGC	1 cut(s)	1386
BccI	CCATC	9 cut(s)	71, 98, 332, 1053, 1177, 1504, 1795, 2566, 2864
BceAI	ACGGC	5 cut(s)	91, 314, 319, 1559, 3272
BciT130I	CCWGG	3 cut(s)	200, 367, 400
BciVI	GTATCC	4 cut(s)	1140, 1519, 1810, 3237
BclI	TGATCA	1 cut(s)	333
BcnI	CCSGG	3 cut(s)	217, 625, 2293
BcoDI	GTCTC	4 cut(s)	899, 1416, 3002, 3261
BfaI	CTAG	2 cut(s)	1503, 1794
BfmI	CTRYAG	3 cut(s)	3017, 3116, 3190
BfoI	RGCGCY	3 cut(s)	354, 719, 797
BfuAI	ACCTGC	2 cut(s)	3109, 3123
BfuI	GTATCC	4 cut(s)	1140, 1519, 1810, 3237
BglII	AGATCT	1 cut(s)	2630
BlpI	GCTNAGC	1 cut(s)	2364
Bme1390I	CCNGG	6 cut(s)	200, 217, 367, 400, 625, 2293
Bme18I	GGWCC	3 cut(s)	667, 783, 3041
BmgT120I	GGNCC	4 cut(s)	77, 667, 783, 3041
BmrFI	CCNGG	6 cut(s)	200, 217, 367, 400, 625, 2293
BmrI	ACTGGG	1 cut(s)	1068
BmuI	ACTGGG	1 cut(s)	1068
BpiI	GAAGAC	7 cut(s)	833, 1466, 1557, 1757, 1848, 2459, 2616
BplI	GAGNNNNNCTC	4 cut(s)	20, 52, 580, 612
BpmI	CTGGAG	2 cut(s)	111, 221
Bpu10I	CCTNAGC	2 cut(s)	81, 1386
Bpu1102I	GCTNAGC	1 cut(s)	2364
Bpu14I	TTCGAA	1 cut(s)	826
BpuEI	CTTGAG	5 cut(s)	1083, 1198, 1316, 2072, 2967
BpuMI	CCSGG	3 cut(s)	217, 625, 2293
BsaHI	GRCGYC	2 cut(s)	351, 716
BsaI	GGTCTC	1 cut(s)	899
BsaWI	WCCGGW	1 cut(s)	472
Bse21I	CCTNAGG	1 cut(s)	2043
BseAI	TCCGGA	1 cut(s)	472
BseBI	CCWGG	3 cut(s)	200, 367, 400
BseGI	GGATG	6 cut(s)	481, 1078, 1417, 1433, 1724, 2281
BseMII	CTCAG	6 cut(s)	127, 702, 1377, 2034, 2378, 2559
BseRI	GAGGAG	6 cut(s)	77, 80, 1295, 1637, 1928, 2393
BseSI	GKGCMC	2 cut(s)	323, 919
BseX3I	CGGCCG	1 cut(s)	1572
BseYI	CCCAGC	1 cut(s)	2506
BsgI	GTGCAG	2 cut(s)	1239, 1308
Bsh1236I	CGCG	2 cut(s)	381, 2790
Bsh1285I	CGRYCG	2 cut(s)	376, 1575
BshFI	GGCC	6 cut(s)	78, 306, 344, 743, 1574, 2246
BshNI	GGYRCC	4 cut(s)	320, 350, 715, 914
BsiEI	CGRYCG	2 cut(s)	376, 1575
BsiHKAI	GWGCWC	6 cut(s)	33, 270, 2175, 2365, 2983, 3185
BsiSI	CCGG	6 cut(s)	138, 216, 473, 624, 2066, 2292
BsiWI	CGTACG	1 cut(s)	72
BsmAI	GTCTC	4 cut(s)	899, 1416, 3002, 3261
BsmI	GAATGC	2 cut(s)	1482, 1773
BsnI	GGCC	6 cut(s)	78, 306, 344, 743, 1574, 2246
Bso31I	GGTCTC	1 cut(s)	899
Bsp119I	TTCGAA	1 cut(s)	826
Bsp1286I	GDGCHC	8 cut(s)	33, 270, 323, 919, 2175, 2365, 2983, 3185
Bsp13I	TCCGGA	1 cut(s)	472
Bsp1720I	GCTNAGC	1 cut(s)	2364
Bsp19I	CCATGG	1 cut(s)	1077
BspANI	GGCC	6 cut(s)	78, 306, 344, 743, 1574, 2246
BspCNI	CTCAG	6 cut(s)	126, 703, 1378, 2035, 2377, 2560
BspEI	TCCGGA	1 cut(s)	472
BspFNI	CGCG	2 cut(s)	381, 2790
BspHI	TCATGA	1 cut(s)	688
BspMAI	CTGCAG	2 cut(s)	3120, 3194
BspMI	ACCTGC	2 cut(s)	3109, 3123
BspPI	GGATC	6 cut(s)	102, 115, 1163, 2044, 2102, 3307
BspQI	GCTCTTC	1 cut(s)	2484
BspT104I	TTCGAA	1 cut(s)	826
BspT107I	GGYRCC	4 cut(s)	320, 350, 715, 914
BspTNI	GGTCTC	1 cut(s)	899
BsrBI	CCGCTC	1 cut(s)	147
BssNI	GRCGYC	2 cut(s)	351, 716
BssSI	CACGAG	1 cut(s)	3166
BssT1I	CCWWGG	4 cut(s)	339, 345, 1077, 3002
Bst2BI	CACGAG	1 cut(s)	3166
Bst2UI	CCWGG	3 cut(s)	200, 367, 400
Bst6I	CTCTTC	7 cut(s)	433, 621, 902, 1392, 2010, 2484, 2675
BstACI	GRCGYC	2 cut(s)	351, 716
BstBI	TTCGAA	1 cut(s)	826
BstC8I	GCNNGC	7 cut(s)	594, 997, 2229, 2244, 2268, 2496, 2532
BstDSI	CCRYGG	4 cut(s)	379, 1077, 1575, 3288
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	6 cut(s)	481, 1078, 1417, 1433, 1724, 2281
BstFNI	CGCG	2 cut(s)	381, 2790
BstH2I	RGCGCY	3 cut(s)	354, 719, 797
BstHHI	GCGC	5 cut(s)	353, 718, 796, 1040, 2614
BstMAI	GTCTC	4 cut(s)	899, 1416, 3002, 3261
BstMCI	CGRYCG	2 cut(s)	376, 1575
BstMWI	GCNNNNNNNGC	6 cut(s)	350, 598, 869, 982, 1016, 3189
BstNI	CCWGG	3 cut(s)	200, 367, 400
BstNSI	RCATGY	5 cut(s)	1268, 2231, 2242, 3028, 3181
BstSCI	CCNGG	6 cut(s)	198, 215, 365, 398, 623, 2291
BstSFI	CTRYAG	3 cut(s)	3017, 3116, 3190
BstSLI	GKGCMC	2 cut(s)	323, 919
BstUI	CGCG	2 cut(s)	381, 2790
BstV2I	GAAGAC	7 cut(s)	833, 1466, 1557, 1757, 1848, 2459, 2616
BstX2I	RGATCY	2 cut(s)	107, 2630
BstXI	CCANNNNNNTGG	1 cut(s)	2254
BstYI	RGATCY	2 cut(s)	107, 2630
BstZI	CGGCCG	1 cut(s)	1572
Bsu36I	CCTNAGG	1 cut(s)	2043
BsuI	GTATCC	4 cut(s)	1140, 1519, 1810, 3237
BsuRI	GGCC	6 cut(s)	78, 306, 344, 743, 1574, 2246
BtgI	CCRYGG	4 cut(s)	379, 1077, 1575, 3288
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	6 cut(s)	481, 1078, 1417, 1433, 1724, 2281
BtsIMutI	CAGTG	7 cut(s)	16, 1256, 2103, 2576, 2850, 3067, 3090
BveI	ACCTGC	2 cut(s)	3109, 3123
Cac8I	GCNNGC	7 cut(s)	594, 997, 2229, 2244, 2268, 2496, 2532
CaiI	CAGNNNCTG	2 cut(s)	941, 1865
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	5 cut(s)	353, 718, 796, 1040, 2614
Cfr13I	GGNCC	4 cut(s)	77, 667, 783, 3041
Cfr42I	CCGCGG	1 cut(s)	382
Csp6I	GTAC	4 cut(s)	73, 361, 1118, 3240
CspCI	CAANNNNNGTGG	6 cut(s)	1456, 1491, 1747, 1782, 2799, 2834
CviQI	GTAC	4 cut(s)	73, 361, 1118, 3240
DinI	GGCGCC	2 cut(s)	352, 717
DrdI	GACNNNNNNGTC	1 cut(s)	2834
DseDI	GACNNNNNNGTC	1 cut(s)	2834
EaeI	YGGCCR	1 cut(s)	1572
EagI	CGGCCG	1 cut(s)	1572
Eam1104I	CTCTTC	7 cut(s)	433, 621, 902, 1392, 2010, 2484, 2675
EarI	CTCTTC	7 cut(s)	433, 621, 902, 1392, 2010, 2484, 2675
EciI	GGCGGA	2 cut(s)	588, 972
Ecl136II	GAGCTC	4 cut(s)	31, 268, 2173, 2981
EclXI	CGGCCG	1 cut(s)	1572
Eco130I	CCWWGG	4 cut(s)	339, 345, 1077, 3002
Eco147I	AGGCCT	1 cut(s)	743
Eco24I	GRGCYC	4 cut(s)	33, 270, 2175, 2983
Eco31I	GGTCTC	1 cut(s)	899
Eco32I	GATATC	3 cut(s)	294, 1164, 2289
Eco47I	GGWCC	3 cut(s)	667, 783, 3041
Eco52I	CGGCCG	1 cut(s)	1572
Eco53kI	GAGCTC	4 cut(s)	31, 268, 2173, 2981
Eco57I	CTGAAG	4 cut(s)	1008, 1551, 1842, 3247
Eco81I	CCTNAGG	1 cut(s)	2043
EcoICRI	GAGCTC	4 cut(s)	31, 268, 2173, 2981
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	3041
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	198, 365, 398
EcoRV	GATATC	3 cut(s)	294, 1164, 2289
EcoT14I	CCWWGG	4 cut(s)	339, 345, 1077, 3002
EcoT38I	GRGCYC	4 cut(s)	33, 270, 2175, 2983
EgeI	GGCGCC	2 cut(s)	352, 717
EheI	GGCGCC	2 cut(s)	352, 717
ErhI	CCWWGG	4 cut(s)	339, 345, 1077, 3002
FalI	AAGNNNNNCTT	6 cut(s)	984, 1016, 1533, 1565, 1824, 1856
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	333
FokI	GGATG	6 cut(s)	488, 1085, 1420, 1424, 1711, 2288
FriOI	GRGCYC	4 cut(s)	33, 270, 2175, 2983
FspBI	CTAG	2 cut(s)	1503, 1794
GlaI	GCGC	5 cut(s)	352, 717, 795, 1039, 2613
GsaI	CCCAGC	1 cut(s)	2510
GsuI	CTGGAG	2 cut(s)	111, 221
HaeII	RGCGCY	3 cut(s)	354, 719, 797
HaeIII	GGCC	6 cut(s)	78, 306, 344, 743, 1574, 2246
HapII	CCGG	6 cut(s)	138, 216, 473, 624, 2066, 2292
HhaI	GCGC	5 cut(s)	353, 718, 796, 1040, 2614
Hin1I	GRCGYC	2 cut(s)	351, 716
Hin6I	GCGC	5 cut(s)	351, 716, 794, 1038, 2612
HinP1I	GCGC	5 cut(s)	351, 716, 794, 1038, 2612
HindIII	AAGCTT	4 cut(s)	957, 1833, 2555, 3066
HpaII	CCGG	6 cut(s)	138, 216, 473, 624, 2066, 2292
HphI	GGTGA	9 cut(s)	205, 328, 466, 493, 1034, 2059, 2718, 2915, 3294
Hpy166II	GTNNAC	5 cut(s)	7, 361, 667, 2209, 2551
Hpy8I	GTNNAC	5 cut(s)	7, 361, 667, 2209, 2551
Hpy99I	CGWCG	2 cut(s)	434, 840
HpyAV	CCTTC	8 cut(s)	451, 591, 630, 686, 733, 1143, 2903, 2952
HpyCH4IV	ACGT	1 cut(s)	2464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	350, 598, 869, 982, 1016, 3189
HpySE526I	ACGT	1 cut(s)	2464
Hsp92I	GRCGYC	2 cut(s)	351, 716
HspAI	GCGC	5 cut(s)	351, 716, 794, 1038, 2612
KasI	GGCGCC	2 cut(s)	350, 715
Kpn2I	TCCGGA	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	333
KspI	CCGCGG	1 cut(s)	382
LguI	GCTCTTC	1 cut(s)	2484
MaeI	CTAG	2 cut(s)	1503, 1794
MaeII	ACGT	1 cut(s)	2464
MaeIII	GTNAC	4 cut(s)	1260, 1489, 1780, 3170
MbiI	CCGCTC	1 cut(s)	147
MfeI	CAATTG	2 cut(s)	2073, 2166
MflI	RGATCY	2 cut(s)	107, 2630
MhlI	GDGCHC	8 cut(s)	33, 270, 323, 919, 2175, 2365, 2983, 3185
Mly113I	GGCGCC	2 cut(s)	351, 716
MlyI	GAGTC	9 cut(s)	1193, 1307, 1451, 1742, 2027, 2078, 2844, 2906, 3263
MmeI	TCCRAC	4 cut(s)	63, 183, 448, 1399
MroI	TCCGGA	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	461
MslI	CAYNNNNRTG	3 cut(s)	329, 432, 1325
MspA1I	CMGCKG	6 cut(s)	235, 381, 604, 1571, 1862, 2198
MspI	CCGG	6 cut(s)	138, 216, 473, 624, 2066, 2292
MspR9I	CCNGG	6 cut(s)	200, 217, 367, 400, 625, 2293
MunI	CAATTG	2 cut(s)	2073, 2166
Mva1269I	GAATGC	2 cut(s)	1482, 1773
MvaI	CCWGG	3 cut(s)	200, 367, 400
MvnI	CGCG	2 cut(s)	381, 2790
MwoI	GCNNNNNNNGC	6 cut(s)	350, 598, 869, 982, 1016, 3189
NarI	GGCGCC	2 cut(s)	351, 716
NciI	CCSGG	3 cut(s)	217, 625, 2293
NcoI	CCATGG	1 cut(s)	1077
NmeAIII	GCCGAG	2 cut(s)	72, 618
NmuCI	GTSAC	2 cut(s)	1260, 3170
NspI	RCATGY	5 cut(s)	1268, 2231, 2242, 3028, 3181
NspV	TTCGAA	1 cut(s)	826
OliI	CACNNNNGTG	1 cut(s)	432
PaeI	GCATGC	1 cut(s)	2231
PagI	TCATGA	1 cut(s)	688
PceI	AGGCCT	1 cut(s)	743
PciI	ACATGT	1 cut(s)	1264
PciSI	GCTCTTC	1 cut(s)	2484
PcsI	WCGNNNNNNNCGW	4 cut(s)	63, 99, 787, 832
PctI	GAATGC	2 cut(s)	1482, 1773
PdmI	GAANNNNTTC	1 cut(s)	461
Pfl23II	CGTACG	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	2753
PfoI	TCCNGGA	1 cut(s)	2291
PleI	GAGTC	9 cut(s)	1193, 1306, 1450, 1741, 2026, 2077, 2843, 2905, 3263
PluTI	GGCGCC	2 cut(s)	354, 719
PpsI	GAGTC	9 cut(s)	1193, 1306, 1450, 1741, 2026, 2077, 2843, 2905, 3263
PpuMI	RGGWCCY	1 cut(s)	3041
PscI	ACATGT	1 cut(s)	1264
Psp124BI	GAGCTC	4 cut(s)	33, 270, 2175, 2983
Psp5II	RGGWCCY	1 cut(s)	3041
Psp6I	CCWGG	3 cut(s)	198, 365, 398
PspFI	CCCAGC	1 cut(s)	2506
PspGI	CCWGG	3 cut(s)	198, 365, 398
PspLI	CGTACG	1 cut(s)	72
PspPI	GGNCC	4 cut(s)	77, 667, 783, 3041
PspPPI	RGGWCCY	1 cut(s)	3041
PstI	CTGCAG	2 cut(s)	3120, 3194
PstNI	CAGNNNCTG	2 cut(s)	941, 1865
PsuI	RGATCY	2 cut(s)	107, 2630
PvuII	CAGCTG	1 cut(s)	2198
RsaI	GTAC	4 cut(s)	74, 362, 1119, 3241
RsaNI	GTAC	4 cut(s)	73, 361, 1118, 3240
RseI	CAYNNNNRTG	3 cut(s)	329, 432, 1325
SacI	GAGCTC	4 cut(s)	33, 270, 2175, 2983
SacII	CCGCGG	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	2484
Sau96I	GGNCC	4 cut(s)	77, 667, 783, 3041
SbfI	CCTGCAGG	1 cut(s)	3120
SchI	GAGTC	9 cut(s)	1193, 1307, 1451, 1742, 2027, 2078, 2844, 2906, 3263
ScrFI	CCNGG	6 cut(s)	200, 217, 367, 400, 625, 2293
SdaI	CCTGCAGG	1 cut(s)	3120
SduI	GDGCHC	8 cut(s)	33, 270, 323, 919, 2175, 2365, 2983, 3185
SfcI	CTRYAG	3 cut(s)	3017, 3116, 3190
SfoI	GGCGCC	2 cut(s)	352, 717
Sfr303I	CCGCGG	1 cut(s)	382
SfuI	TTCGAA	1 cut(s)	826
SgrBI	CCGCGG	1 cut(s)	382
SinI	GGWCC	3 cut(s)	667, 783, 3041
SmiMI	CAYNNNNRTG	3 cut(s)	329, 432, 1325
SmlI	CTYRAG	5 cut(s)	1098, 1213, 1295, 2087, 2982
SmoI	CTYRAG	5 cut(s)	1098, 1213, 1295, 2087, 2982
SphI	GCATGC	1 cut(s)	2231
Sse8387I	CCTGCAGG	1 cut(s)	3120
SseBI	AGGCCT	1 cut(s)	743
SspDI	GGCGCC	2 cut(s)	350, 715
SspI	AATATT	1 cut(s)	2191
SspMI	CTAG	2 cut(s)	1503, 1794
SstI	GAGCTC	4 cut(s)	33, 270, 2175, 2983
StuI	AGGCCT	1 cut(s)	743
StyD4I	CCNGG	6 cut(s)	198, 215, 365, 398, 623, 2291
StyI	CCWWGG	4 cut(s)	339, 345, 1077, 3002
TaiI	ACGT	1 cut(s)	2467
TaqI	TCGA	4 cut(s)	57, 66, 764, 826
TaqII	GACCGA	2 cut(s)	771, 2828
TatI	WGTACW	3 cut(s)	360, 1117, 3239
TauI	GCSGC	5 cut(s)	235, 381, 604, 1574, 1865
TscAI	CASTG	7 cut(s)	16, 1263, 2110, 2583, 2857, 3067, 3090
TseFI	GTSAC	2 cut(s)	1260, 3170
Tsp45I	GTSAC	2 cut(s)	1260, 3170
TspGWI	ACGGA	2 cut(s)	2460, 3021
TspRI	CASTG	7 cut(s)	16, 1263, 2110, 2583, 2857, 3067, 3090
Van91I	CCANNNNNTGG	1 cut(s)	2753
VpaK11BI	GGWCC	3 cut(s)	667, 783, 3041
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	5 cut(s)	313, 461, 1427, 2664, 2716
XceI	RCATGY	5 cut(s)	1268, 2231, 2242, 3028, 3181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2119
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	2 cut(s)	1503, 1794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.