Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006168.1

Orthogroup ID

OG0015672

Physical Location & Seq

Genomic Coordinates Forward (+)

12277 .. 13472

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgaatacttcaggagacattatggggtcaatcagtgcacctagtgagccagatgagcccatgattattgagcttgcatttgtagctatggaggagctaatccgaatggctcaaattggcgagcctttgtggatgaatagcattgatggatcaaccactgtgctcaatgaggatgagtacattcgaacatgtcctcgtggaattgtgccgaagcaacctggattcaaatgtgaagcttcgcgggagagtgctgttgtcattatgaaccgcaataagcttgttgagattctcatggatgtggccagcgagcctgtcaatccctccacggtcaacactttagtggggggcgaagaggaagaggcttttgtttcgaagcctatcccggaaggagctaccatcgatgagactatcgcgatccttatggagaatgtcgagaaccatcgcaagaagatggacgcggatctcgccagagaaactgcaaaatcagaaaggctcatcagcgagtttgaacagcgcatgactctctatgcggaaaataccaggcagcaggcacacagacagagggcgccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

190

Amino Acids

21.18

Weight (kDa)

4.61

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	25 - 101	6.8e-06	START domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43300
malus_domestica	MD17G1095100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470751
rosa_laevigata	RLG00000024245
rosa_multiflora	Rmu_sc0002790.1_g000010 Rmu_sc0006168.1_g000005 Rmu_sc0006168.1_g000012 Rmu_sc0006168.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410600
rosa_samantha	Rh3AG162000 Rh3BG186900 Rh3BG187100 Rh3CG177100 Rh3CG177300 Rh3DG188600 Rh3DG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	565
AccII	CGCG	3 cut(s)	241, 413, 458
AciI	CCGC	4 cut(s)	241, 268, 458, 530
AclWI	GGATC	3 cut(s)	157, 409, 468
AcoI	YGGCCR	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	566
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	226, 509
AjnI	CCWGG	2 cut(s)	217, 539
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	6 cut(s)	73, 86, 97, 236, 277, 392
AluI	AGCT	6 cut(s)	73, 86, 97, 236, 277, 392
Alw21I	GWGCWC	2 cut(s)	40, 165
Alw26I	GTCTC	2 cut(s)	9, 398
Alw44I	GTGCAC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	157, 409, 468
AoxI	GGCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	544
AspLEI	GCGC	2 cut(s)	516, 568
AsuC2I	CCSGG	1 cut(s)	383
AsuII	TTCGAA	2 cut(s)	184, 371
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	40, 165
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	4 cut(s)	140, 404, 445, 447
BciT130I	CCWGG	2 cut(s)	219, 541
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	9, 398
BfaI	CTAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	569
BisI	GCNGC	1 cut(s)	545
BlsI	GCNGC	1 cut(s)	546
Bme1390I	CCNGG	3 cut(s)	219, 383, 541
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	3 cut(s)	219, 383, 541
Bpu14I	TTCGAA	2 cut(s)	184, 371
BpuMI	CCSGG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	566
BsaJI	CCNNGG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	219, 541
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	3 cut(s)	138, 178, 301
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	556
Bsh1236I	CGCG	3 cut(s)	241, 413, 458
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	565
BshVI	ATCGAT	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	40, 165
BsiSI	CCGG	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	9, 398
BsnI	GGCC	1 cut(s)	302
Bsp119I	TTCGAA	2 cut(s)	184, 371
Bsp1286I	GDGCHC	3 cut(s)	40, 60, 165
Bsp143I	GATC	3 cut(s)	149, 414, 460
Bsp68I	TCGCGA	1 cut(s)	413
BspACI	CCGC	4 cut(s)	241, 268, 458, 530
BspANI	GGCC	1 cut(s)	302
BspDI	ATCGAT	1 cut(s)	399
BspFNI	CGCG	3 cut(s)	241, 413, 458
BspLI	GGNNCC	1 cut(s)	567
BspPI	GGATC	3 cut(s)	157, 409, 468
BspT104I	TTCGAA	2 cut(s)	184, 371
BspT107I	GGYRCC	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	149, 414, 460
BssNI	GRCGYC	1 cut(s)	566
BssSI	CACGAG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	219, 541
Bst4CI	ACNGT	2 cut(s)	160, 328
Bst6I	CTCTTC	2 cut(s)	345, 351
BstACI	GRCGYC	1 cut(s)	566
BstBI	TTCGAA	2 cut(s)	184, 371
BstC8I	GCNNGC	5 cut(s)	75, 122, 304, 308, 549
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	138, 178, 301
BstFNI	CGCG	3 cut(s)	241, 413, 458
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	2 cut(s)	516, 568
BstKTI	GATC	3 cut(s)	152, 417, 463
BstMAI	GTCTC	2 cut(s)	9, 398
BstMBI	GATC	3 cut(s)	149, 414, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 83, 464
BstNI	CCWGG	2 cut(s)	219, 541
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	3 cut(s)	217, 381, 539
BstSLI	GKGCMC	1 cut(s)	40
BstUI	CGCG	3 cut(s)	241, 413, 458
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	302
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	3 cut(s)	138, 178, 301
BtsIMutI	CAGTG	2 cut(s)	40, 156
BtuMI	TCGCGA	1 cut(s)	413
Cac8I	GCNNGC	5 cut(s)	75, 122, 304, 308, 549
CfoI	GCGC	2 cut(s)	516, 568
ClaI	ATCGAT	1 cut(s)	399
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	61, 189, 292, 517
CviQI	GTAC	1 cut(s)	178
DinI	GGCGCC	1 cut(s)	567
DpnI	GATC	3 cut(s)	151, 416, 462
DpnII	GATC	3 cut(s)	149, 414, 460
DraIII	CACNNNGTG	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	345, 351
EarI	CTCTTC	2 cut(s)	345, 351
Eco24I	GRGCYC	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	217, 539
EcoT38I	GRGCYC	1 cut(s)	60
EgeI	GGCGCC	1 cut(s)	567
EheI	GGCGCC	1 cut(s)	567
FaeI	CATG	4 cut(s)	64, 192, 295, 520
FaiI	YATR	9 cut(s)	23, 62, 89, 190, 263, 293, 422, 518, 528
FatI	CATG	4 cut(s)	60, 188, 291, 516
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	545
FokI	GGATG	3 cut(s)	145, 185, 308
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	545
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	2 cut(s)	515, 567
GluI	GCNGC	1 cut(s)	545
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	383
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	2 cut(s)	516, 568
Hin1I	GRCGYC	1 cut(s)	566
Hin1II	CATG	4 cut(s)	64, 192, 295, 520
Hin6I	GCGC	2 cut(s)	514, 566
HinP1I	GCGC	2 cut(s)	514, 566
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	2 cut(s)	234, 275
HinfI	GANTC	3 cut(s)	222, 286, 520
HpaII	CCGG	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	38, 331
Hpy188I	TCNGA	2 cut(s)	104, 487
Hpy188III	TCNNGA	3 cut(s)	12, 412, 433
Hpy8I	GTNNAC	2 cut(s)	38, 331
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	160, 328
HpyCH4V	TGCA	3 cut(s)	38, 77, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 83, 464
Hsp92I	GRCGYC	1 cut(s)	566
Hsp92II	CATG	4 cut(s)	64, 192, 295, 520
HspAI	GCGC	2 cut(s)	514, 566
KasI	GGCGCC	1 cut(s)	565
Kzo9I	GATC	3 cut(s)	149, 414, 460
LmnI	GCTCC	2 cut(s)	94, 389
Lsp1109I	GCAGC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	42
MalI	GATC	3 cut(s)	151, 416, 462
MboI	GATC	3 cut(s)	149, 414, 460
MboII	GAAGA	3 cut(s)	362, 368, 460
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	3 cut(s)	40, 60, 165
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	2 cut(s)	114, 201
MluNI	TGGCCA	1 cut(s)	302
Mly113I	GGCGCC	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	514
MnlI	CCTC	7 cut(s)	85, 163, 204, 331, 346, 352, 555
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MslI	CAYNNNNRTG	2 cut(s)	296, 338
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	3 cut(s)	219, 383, 541
MvaI	CCWGG	2 cut(s)	219, 541
MvnI	CGCG	3 cut(s)	241, 413, 458
MwoI	GCNNNNNNNGC	3 cut(s)	55, 83, 464
NarI	GGCGCC	1 cut(s)	566
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	3 cut(s)	149, 414, 460
NlaIII	CATG	4 cut(s)	64, 192, 295, 520
NlaIV	GGNNCC	1 cut(s)	567
NruI	TCGCGA	1 cut(s)	413
NspI	RCATGY	1 cut(s)	192
NspV	TTCGAA	2 cut(s)	184, 371
OliI	CACNNNNGTG	1 cut(s)	338
PciI	ACATGT	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	222, 286
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	546
PleI	GAGTC	1 cut(s)	514
PluTI	GGCGCC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	514
PscI	ACATGT	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	217, 539
PspGI	CCWGG	2 cut(s)	217, 539
PspN4I	GGNNCC	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	460
RruI	TCGCGA	1 cut(s)	413
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	296, 338
SatI	GCNGC	1 cut(s)	545
Sau3AI	GATC	3 cut(s)	149, 414, 460
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	3 cut(s)	219, 383, 541
SduI	GDGCHC	3 cut(s)	40, 60, 165
SetI	ASST	8 cut(s)	43, 75, 88, 99, 220, 238, 279, 394
SfoI	GGCGCC	1 cut(s)	567
SfuI	TTCGAA	2 cut(s)	184, 371
SmiMI	CAYNNNNRTG	2 cut(s)	296, 338
Sse9I	AATT	2 cut(s)	114, 201
SsiI	CCGC	4 cut(s)	241, 268, 458, 530
SspDI	GGCGCC	1 cut(s)	565
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	217, 381, 539
TaaI	ACNGT	2 cut(s)	160, 328
TaqI	TCGA	4 cut(s)	184, 371, 399, 432
TasI	AATT	2 cut(s)	114, 201
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	222, 286
TscAI	CASTG	2 cut(s)	40, 163
TseI	GCWGC	1 cut(s)	544
TspDTI	ATGAA	3 cut(s)	17, 149, 278
TspRI	CASTG	2 cut(s)	40, 163
VneI	GTGCAC	1 cut(s)	36
XceI	RCATGY	1 cut(s)	192
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.