Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006168.1

Orthogroup ID

OG0015672

Physical Location & Seq

Genomic Coordinates Forward (+)

30482 .. 31186

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgttgaagctggccgagagaatggttataagtttttgtgccggagtgagtgagagtgcatctaccactcaaacatggacgacgctatctcgaacaggggctgatgatgttcgtgtgatgacccgaaagagtgtggatgatccaggaaggcctcagggcattgtgctcactgcagcaacctcattctggcttcctgttccccgcaaaagggtctttgagttccttcgtgataagaactctcgaaataaggtacgtgaattacatttcaataatgtgggagttaccaaaattagggttaggaattccaaaccgagatcccgaaaccgatctcgtccgattcgagccgaaaccgatcgggtcagtatgatgactcgtttccccggaatcccgatccgaaccgtaccgaaacctctgcaaactgttgctgggattcgtggtgagtcatgggtatgggttgacggaaacggaggggtggtggtgtcgtgcgcgtggaagcccgggtggaataagttgccggcgacggagagggagaggctgaagtcgaggcagggggtcagatccaactccagaaacaaagcgaaaaacagctacctgaatcgaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010026 GO:0010090 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048468 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090567 GO:0090626 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

201

Amino Acids

22.8

Weight (kDa)

11.65

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDF2_C	PF25797	1 - 85	1.5e-28	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43300
malus_domestica	MD17G1095100.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470751
rosa_laevigata	RLG00000024245
rosa_multiflora	Rmu_sc0002790.1_g000010 Rmu_sc0006168.1_g000005 Rmu_sc0006168.1_g000012 Rmu_sc0006168.1_g000014
rosa_roxburghii	Rroxscaffold_6G00410600
rosa_samantha	Rh3AG162000 Rh3BG186900 Rh3BG187100 Rh3CG177100 Rh3CG177300 Rh3DG188600 Rh3DG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
AccII	CGCG	1 cut(s)	488
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	4 cut(s)	134, 309, 385, 552
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	2 cut(s)	252, 402
AfiI	CCNNNNNNNGG	4 cut(s)	186, 207, 208, 291
AgsI	TTSAA	2 cut(s)	7, 268
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	10, 588
AluI	AGCT	2 cut(s)	10, 588
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	4 cut(s)	134, 309, 385, 552
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	2 cut(s)	12, 149
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	488
AsuC2I	CCSGG	3 cut(s)	381, 498, 499
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	497
AxyI	CCTNAGG	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	144
BcnI	CCSGG	3 cut(s)	381, 498, 499
BfmI	CTRYAG	1 cut(s)	171
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	4 cut(s)	144, 381, 498, 499
BmeT110I	CYCGRG	1 cut(s)	497
BmrFI	CCNGG	4 cut(s)	144, 381, 498, 499
BmsI	GCATC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	550
BpuMI	CCSGG	3 cut(s)	381, 498, 499
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	379, 497
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	4 cut(s)	186, 207, 208, 291
Bse118I	RCCGGY	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	379, 497
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	4 cut(s)	186, 207, 208, 291
BseMII	CTCAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	185
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	14, 151
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	4 cut(s)	42, 381, 498, 515
BslI	CCNNNNNNNGG	4 cut(s)	186, 207, 208, 291
BsnI	GGCC	2 cut(s)	14, 151
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	139, 314, 326, 352, 390, 557
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	14, 151
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	488
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	4 cut(s)	134, 309, 385, 552
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	379, 497
BssMI	GATC	6 cut(s)	139, 314, 326, 352, 390, 557
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	400, 421
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	12, 516
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	6 cut(s)	142, 317, 329, 355, 393, 560
BstMBI	GATC	6 cut(s)	139, 314, 326, 352, 390, 557
BstMCI	CGRYCG	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	4 cut(s)	142, 379, 496, 497
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	314, 557
BstYI	RGATCY	2 cut(s)	314, 557
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	14, 151
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	12, 516
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	514
Cfr9I	CCCGGG	1 cut(s)	497
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	251, 401
CviAII	CATG	2 cut(s)	75, 444
CviJI	RGCY	9 cut(s)	10, 14, 101, 151, 190, 344, 496, 535, 588
CviKI_1	RGCY	9 cut(s)	10, 14, 101, 151, 190, 344, 496, 535, 588
CviQI	GTAC	2 cut(s)	251, 401
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	6 cut(s)	141, 316, 328, 354, 392, 559
DpnII	GATC	6 cut(s)	139, 314, 326, 352, 390, 557
EaeI	YGGCCR	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	557
Eco81I	CCTNAGG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	78, 447
FaiI	YATR	5 cut(s)	29, 76, 365, 445, 451
FatI	CATG	2 cut(s)	74, 443
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	174
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	1 cut(s)	174
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	550
HaeIII	GGCC	2 cut(s)	14, 151
HapII	CCGG	4 cut(s)	42, 381, 498, 515
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	78, 447
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	6 cut(s)	337, 370, 384, 430, 440, 595
HpaII	CCGG	4 cut(s)	42, 381, 498, 515
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	3 cut(s)	336, 395, 557
Hpy188III	TCNNGA	6 cut(s)	90, 227, 240, 318, 388, 567
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	2 cut(s)	85, 523
HpyAV	CCTTC	2 cut(s)	141, 233
HpyCH4III	ACNGT	2 cut(s)	400, 421
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	3 cut(s)	59, 173, 415
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	78, 447
HspAI	GCGC	1 cut(s)	486
KroI	GCCGGC	1 cut(s)	514
KroNI	GCCGGC	1 cut(s)	516
Kzo9I	GATC	6 cut(s)	139, 314, 326, 352, 390, 557
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	68
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	6 cut(s)	141, 316, 328, 354, 392, 559
MboI	GATC	6 cut(s)	139, 314, 326, 352, 390, 557
MflI	RGATCY	2 cut(s)	314, 557
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	3 cut(s)	257, 288, 301
MlyI	GAGTC	2 cut(s)	364, 449
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	7 cut(s)	162, 190, 420, 461, 519, 525, 537
MroNI	GCCGGC	1 cut(s)	514
MslI	CAYNNNNRTG	1 cut(s)	448
MspI	CCGG	4 cut(s)	42, 381, 498, 515
MspR9I	CCNGG	4 cut(s)	144, 381, 498, 499
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	488
NaeI	GCCGGC	1 cut(s)	516
NciI	CCSGG	3 cut(s)	381, 498, 499
NdeII	GATC	6 cut(s)	139, 314, 326, 352, 390, 557
NgoMIV	GCCGGC	1 cut(s)	514
NlaIII	CATG	2 cut(s)	78, 447
NmeAIII	GCCGAG	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	516
PfeI	GAWTC	4 cut(s)	337, 384, 430, 595
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	175
Ple19I	CGATCG	1 cut(s)	355
PleI	GAGTC	2 cut(s)	364, 448
PpsI	GAGTC	2 cut(s)	364, 448
Ppu21I	YACGTR	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	314, 557
PvuI	CGATCG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	252, 402
RsaNI	GTAC	2 cut(s)	251, 401
RseI	CAYNNNNRTG	1 cut(s)	448
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	6 cut(s)	139, 314, 326, 352, 390, 557
SchI	GAGTC	2 cut(s)	364, 449
ScrFI	CCNGG	4 cut(s)	144, 381, 498, 499
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	7 cut(s)	12, 182, 252, 256, 412, 590, 594
SfaNI	GCATC	1 cut(s)	68
SfcI	CTRYAG	1 cut(s)	171
SmaI	CCCGGG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	448
Sse9I	AATT	3 cut(s)	257, 288, 301
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	202
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	4 cut(s)	142, 379, 496, 497
TaaI	ACNGT	2 cut(s)	400, 421
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	5 cut(s)	91, 241, 340, 542, 598
TasI	AATT	3 cut(s)	257, 288, 301
TfiI	GAWTC	4 cut(s)	337, 384, 430, 595
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	173
TspGWI	ACGGA	3 cut(s)	474, 480, 536
TspMI	CCCGGG	1 cut(s)	497
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	301
XmaI	CCCGGG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.