Rmu_sc0006214.1_g000016

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006214.1
OG0016344
Physical Location & Seq
Reverse (-)
68208 .. 68828
621 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
atggaaggagagaactcatcaaacgatgtatacagagagtgcctcagaaaccatgcagccagcctcggcagctatgccaccgacgggtgtggagagtttacactcgacgacacctcgtccccaggcggactacaatgcgccgcctgcggctgccaccgcaacttccaccgccgagtcacctacgcacccggcttaggcagatcatccggcggcggcactgctcatcatcgcgtcatcagctgcagcagccgaggagatcttcaccacgagatgatgacgtcacaggaactgattgattacaatgtcggcggtggagggggagcagcggcgcggcagatgatggtggtggagtcaccggacagcggggacaggagcggcagcgggaggaagcggttcaggtccaagttcacggtggagcagaaggagaagatgctggcgtttgcggagaagctggggtggaagctgcagaggaaagatctagaagatgagattgagaggttctgcagaagtattggggtcagcagacaggttttcaaagtgtggatgcataaccacaagaacctctcctcttcttcttctgcatctacaactgccaatgcctcctctctcacaacccagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ZF-HD_dimer

Protein Analysis

206

Amino Acids

22.44

Weight (kDa)

8.49

Isoelectric Point (pI)

67.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 10 - 60 4.3e-24 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016344)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17830
malus_domestica MD06G1234500.v1.1 MD14G1241400.v1.1
prunus_persica Prupe.5G239000_v2.0.a1
pyrus_communis pycom06g20920
rosa_chinensis RchiOBHm_Chr7g0177751
rosa_laevigata RLG00000005507
rosa_multiflora Rmu_sc0006214.1_g000016
rosa_roxburghii Rroxscaffold_3G00275590
rosa_rugosa Rorug06G0409200
rosa_samantha Rh7AG008700 Rh7BG008900 Rh7CG009100 Rh7DG008900
rosa_wichuraiana Rw7G000720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 30
AccII CGCG 2 cut(s) 231, 331
AcyI GRCGYC 1 cut(s) 278
AfiI CCNNNNNNNGG 3 cut(s) 84, 194, 362
AgsI TTSAA 1 cut(s) 535
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 4 cut(s) 72, 240, 451, 463
AluI AGCT 4 cut(s) 72, 240, 451, 463
AlwNI CAGNNNCTG 1 cut(s) 289
ApeKI GCWGC 9 cut(s) 56, 69, 150, 240, 243, 246, 323, 378, 463
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 2 cut(s) 140, 331
AspS9I GGNCC 1 cut(s) 399
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 3 cut(s) 169, 254, 345
AvaII GGWCC 1 cut(s) 399
BauI CACGAG 1 cut(s) 266
BbvI GCAGC 9 cut(s) 68, 81, 137, 227, 255, 258, 335, 390, 450
BccI CCATC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 123
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 3 cut(s) 241, 464, 502
BglII AGATCT 2 cut(s) 256, 475
Bme1390I CCNGG 2 cut(s) 123, 189
Bme18I GGWCC 1 cut(s) 399
BmeRI GACNNNNNGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 399
BmrFI CCNGG 2 cut(s) 123, 189
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 3 cut(s) 420, 534, 590
BmuI ACTGGG 1 cut(s) 610
BplI GAGNNNNNCTC 2 cut(s) 27, 59
Bpu10I CCTNAGC 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 64, 121, 250
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 194, 362
Bse1I ACTGG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 3 cut(s) 64, 121, 250
BseGI GGATG 2 cut(s) 203, 549
BseLI CCNNNNNNNGG 3 cut(s) 84, 194, 362
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 616
BseRI GAGGAG 3 cut(s) 267, 556, 592
BseXI GCAGC 9 cut(s) 68, 81, 137, 227, 255, 258, 335, 390, 450
BseYI CCCAGC 1 cut(s) 451
Bsh1236I CGCG 2 cut(s) 231, 331
BsiSI CCGG 3 cut(s) 189, 207, 356
BslFI GGGAC 2 cut(s) 103, 380
BslI CCNNNNNNNGG 3 cut(s) 84, 194, 362
BsmFI GGGAC 2 cut(s) 103, 380
Bsp143I GATC 3 cut(s) 200, 256, 475
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 231, 331
BspMAI CTGCAG 3 cut(s) 245, 468, 506
BsrBI CCGCTC 1 cut(s) 375
BsrI ACTGG 1 cut(s) 616
BssECI CCNNGG 3 cut(s) 64, 121, 250
BssMI GATC 3 cut(s) 200, 256, 475
BssNAI GTATAC 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 278
BssSI CACGAG 1 cut(s) 266
Bst1107I GTATAC 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 574
BstACI GRCGYC 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 61, 145, 435
BstDEI CTNAG 2 cut(s) 44, 193
BstF5I GGATG 2 cut(s) 203, 549
BstFNI CGCG 2 cut(s) 231, 331
BstHHI GCGC 2 cut(s) 140, 331
BstKTI GATC 3 cut(s) 203, 259, 478
BstMBI GATC 3 cut(s) 200, 256, 475
BstMWI GCNNNNNNNGC 5 cut(s) 69, 144, 156, 237, 246
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 2 cut(s) 121, 187
BstSFI CTRYAG 3 cut(s) 241, 464, 502
BstUI CGCG 2 cut(s) 231, 331
BstV1I GCAGC 9 cut(s) 68, 81, 137, 227, 255, 258, 335, 390, 450
BstX2I RGATCY 2 cut(s) 256, 475
BstYI RGATCY 2 cut(s) 256, 475
BstZ17I GTATAC 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 2 cut(s) 203, 549
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 61, 145, 435
CaiI CAGNNNCTG 1 cut(s) 289
CfoI GCGC 2 cut(s) 140, 331
Cfr13I GGNCC 1 cut(s) 399
CseI GACGC 1 cut(s) 220
CviAII CATG 1 cut(s) 53
CviJI RGCY 9 cut(s) 59, 63, 72, 150, 192, 240, 249, 451, 463
CviKI_1 RGCY 9 cut(s) 59, 63, 72, 150, 192, 240, 249, 451, 463
DdeI CTNAG 2 cut(s) 44, 193
DpnI GATC 3 cut(s) 202, 258, 477
DpnII GATC 3 cut(s) 200, 256, 475
DriI GACNNNNNGTC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 574
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 574
EciI GGCGGA 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 549
FaeI CATG 1 cut(s) 56
FaiI YATR 4 cut(s) 31, 54, 75, 549
FaqI GGGAC 2 cut(s) 103, 380
FatI CATG 1 cut(s) 52
FauI CCCGC 2 cut(s) 356, 374
FblI GTMKAC 1 cut(s) 30
FokI GGATG 2 cut(s) 190, 556
FspBI CTAG 1 cut(s) 479
GlaI GCGC 2 cut(s) 139, 330
GsaI CCCAGC 1 cut(s) 455
HapII CCGG 3 cut(s) 189, 207, 356
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 140, 331
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 2 cut(s) 138, 329
HinP1I GCGC 2 cut(s) 138, 329
HinfI GANTC 2 cut(s) 174, 350
HpaII CCGG 3 cut(s) 189, 207, 356
HphI GGTGA 3 cut(s) 169, 254, 345
Hpy166II GTNNAC 3 cut(s) 31, 99, 408
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 3 cut(s) 31, 99, 408
Hpy99I CGWCG 2 cut(s) 86, 110
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 6 cut(s) 56, 243, 466, 504, 547, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 144, 156, 237, 246
HpyF3I CTNAG 2 cut(s) 44, 193
HpySE526I ACGT 1 cut(s) 278
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 2 cut(s) 138, 329
Kzo9I GATC 3 cut(s) 200, 256, 475
LmnI GCTCC 3 cut(s) 320, 372, 415
Lsp1109I GCAGC 9 cut(s) 68, 81, 137, 227, 255, 258, 335, 390, 450
LweI GCATC 3 cut(s) 420, 534, 590
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 175, 279, 351
MalI GATC 3 cut(s) 202, 258, 477
MbiI CCGCTC 1 cut(s) 375
MboI GATC 3 cut(s) 200, 256, 475
MboII GAAGA 6 cut(s) 251, 439, 494, 561, 564, 567
MflI RGATCY 2 cut(s) 256, 475
MlyI GAGTC 2 cut(s) 183, 359
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 392
MspA1I CMGCKG 4 cut(s) 240, 326, 363, 381
MspI CCGG 3 cut(s) 189, 207, 356
MspR9I CCNGG 2 cut(s) 123, 189
MvaI CCWGG 1 cut(s) 123
MvnI CGCG 2 cut(s) 231, 331
MwoI GCNNNNNNNGC 5 cut(s) 69, 144, 156, 237, 246
NciI CCSGG 1 cut(s) 189
NdeII GATC 3 cut(s) 200, 256, 475
NlaIII CATG 1 cut(s) 56
NmeAIII GCCGAG 3 cut(s) 45, 197, 275
NmuCI GTSAC 3 cut(s) 175, 279, 351
NsiI ATGCAT 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 392
PleI GAGTC 2 cut(s) 182, 358
PpsI GAGTC 2 cut(s) 182, 358
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 399
PstI CTGCAG 3 cut(s) 245, 468, 506
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 256, 475
PvuII CAGCTG 1 cut(s) 240
Sau3AI GATC 3 cut(s) 200, 256, 475
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 2 cut(s) 183, 359
ScrFI CCNGG 2 cut(s) 123, 189
SfaNI GCATC 3 cut(s) 420, 534, 590
SfcI CTRYAG 3 cut(s) 241, 464, 502
SinI GGWCC 1 cut(s) 399
SspMI CTAG 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 121, 187
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 105
TauI GCSGC 7 cut(s) 143, 150, 213, 216, 329, 334, 378
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 3 cut(s) 175, 279, 351
TseI GCWGC 9 cut(s) 56, 69, 150, 240, 243, 246, 323, 378, 463
Tsp45I GTSAC 3 cut(s) 175, 279, 351
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 1 cut(s) 479
ZraI GACGTC 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.