Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006237.1

Orthogroup ID

OG0006308

Physical Location & Seq

Genomic Coordinates Reverse (-)

24309 .. 25216

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006237.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggaaggcggagacgggacgatgcggctcggggctctcaacatgaaggcggatcgggtgaggttcgattcgagtcccgatgtgtcggtttcgtcgccggtgaccaagcagaaggcggcggcggccaagcagtttattgagaatcactacaagaactatctacaaggactacaggatcggcaagagagacgtcgagcacttcaaaggaaagtgcaagaagatcaggtaccggctgaggaacaagaagagatgatgaggaatttggcacgccgagaaacagaatatatgagactccaaagacgtaaaatcggaattgatgattttgagcaattaactgtaattggaaaaggtgcctttggcgaggtattacatctcactcatttattttcaaatgttacatttccattcagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0002009 GO:0002165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007423 GO:0007444 GO:0007455 GO:0007469 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008037 GO:0008038 GO:0008144 GO:0008150 GO:0008152 GO:0008544 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009913 GO:0009987 GO:0010769 GO:0010975 GO:0016043 GO:0016301 GO:0016310 GO:0016358 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022008 GO:0022416 GO:0022603 GO:0022604 GO:0023052 GO:0030030 GO:0030154 GO:0030182 GO:0030424 GO:0030425 GO:0030554 GO:0030855 GO:0031175 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032990 GO:0035107 GO:0035114 GO:0035120 GO:0035214 GO:0035220 GO:0035239 GO:0035295 GO:0035315 GO:0035316 GO:0035317 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0045595 GO:0045664 GO:0048468 GO:0048513 GO:0048563 GO:0048569 GO:0048666 GO:0048667 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048800 GO:0048812 GO:0048813 GO:0048814 GO:0048856 GO:0048858 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0065007 GO:0070451 GO:0070593 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097447 GO:0097458 GO:0099568 GO:0120025 GO:0120035 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

137

Amino Acids

15.82

Weight (kDa)

9.0

Isoelectric Point (pI)

75.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09890 AT5G09890
fragaria_vesca	FvH4_2g34390 FvH4_2g34390
malus_domestica	MD08G1101000.v1.1 MD15G1082200.v1.1
prunus_persica	Prupe.1G434900_v2.0.a1
pyrus_communis	pycom08g08160 pycom15g07700
rosa_chinensis	RchiOBHm_Chr6g0307981 RchiOBHm_Chr6g0307991
rosa_laevigata	RLG00000010681
rosa_multiflora	Rmu_sc0006237.1_g000004 Rmu_sc0006237.1_g000005 Rmu_sc0006237.1_g000006
rosa_roxburghii	Rroxscaffold_7G00160700
rosa_rugosa	Rorug04G0153400 Rorug04G0153400 Rorug04G0153500 Rorug06G0362900 Rorug06G0362900 Rorug06G0362900
rosa_samantha	Rh6AG471400 Rh6BG482300 Rh6DG473800 Rh6DG473900
rosa_wichuraiana	Rw6G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	193
Acc65I	GGTACC	1 cut(s)	226
AccB1I	GGYRCC	2 cut(s)	226, 350
AciI	CCGC	6 cut(s)	9, 25, 50, 116, 119, 122
AclWI	GGATC	2 cut(s)	60, 183
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	203, 390
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	3 cut(s)	6, 181, 283
AlwI	GGATC	2 cut(s)	60, 183
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	259
Asp718I	GGTACC	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	70, 112
AvaI	CYCGRG	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	226, 350
BanII	GRGCYC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
Bbv12I	GWGCWC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	6, 181, 283
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	4 cut(s)	26, 117, 120, 123
BlsI	GCNGC	4 cut(s)	27, 118, 121, 124
BmeT110I	CYCGRG	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	228, 352
BmsI	GCATC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	190
Bse118I	RCCGGY	2 cut(s)	97, 229
BseMII	CTCAG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	2 cut(s)	226, 350
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	98, 230
BslFI	GGGAC	2 cut(s)	31, 60
BsmAI	GTCTC	3 cut(s)	6, 181, 283
BsmBI	CGTCTC	2 cut(s)	6, 181
BsmFI	GGGAC	2 cut(s)	31, 60
BsnI	GGCC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	37, 199
Bsp143I	GATC	3 cut(s)	52, 175, 220
BspACI	CCGC	6 cut(s)	9, 25, 50, 116, 119, 122
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	228, 352
BspPI	GGATC	2 cut(s)	60, 183
BspT107I	GGYRCC	2 cut(s)	226, 350
BsrFI	RCCGGY	2 cut(s)	97, 229
BssAI	RCCGGY	2 cut(s)	97, 229
BssMI	GATC	3 cut(s)	52, 175, 220
BssNI	GRCGYC	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	100
BstKTI	GATC	3 cut(s)	55, 178, 223
BstMAI	GTCTC	3 cut(s)	6, 181, 283
BstMBI	GATC	3 cut(s)	52, 175, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	268
Cfr10I	RCCGGY	2 cut(s)	97, 229
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	4 cut(s)	28, 35, 125, 233
CviKI_1	RGCY	4 cut(s)	28, 35, 125, 233
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	3 cut(s)	54, 177, 222
DpnII	GATC	3 cut(s)	52, 175, 220
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EciI	GGCGGA	2 cut(s)	24, 65
Eco24I	GRGCYC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	29
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	37
Esp3I	CGTCTC	2 cut(s)	6, 181
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 285, 287
FaqI	GGGAC	2 cut(s)	31, 60
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	26, 117, 120, 123
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	4 cut(s)	26, 117, 120, 123
GluI	GCNGC	4 cut(s)	26, 117, 120, 123
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	2 cut(s)	98, 230
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	4 cut(s)	68, 73, 142, 291
HpaII	CCGG	2 cut(s)	98, 230
HphI	GGTGA	2 cut(s)	70, 112
Hpy188I	TCNGA	1 cut(s)	311
Hpy188III	TCNNGA	1 cut(s)	77
Hpy99I	CGWCG	2 cut(s)	97, 195
HpyAV	CCTTC	2 cut(s)	40, 106
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	190, 301
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	2 cut(s)	190, 301
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	230
Kzo9I	GATC	3 cut(s)	52, 175, 220
LpnPI	CCDG	4 cut(s)	111, 158, 209, 243
LweI	GCATC	1 cut(s)	12
MaeII	ACGT	2 cut(s)	190, 301
MaeIII	GTNAC	2 cut(s)	100, 394
MalI	GATC	3 cut(s)	54, 177, 222
MboI	GATC	3 cut(s)	52, 175, 220
MboII	GAAGA	2 cut(s)	230, 257
MhlI	GDGCHC	2 cut(s)	37, 199
MluCI	AATT	4 cut(s)	259, 312, 329, 339
MlyI	GAGTC	2 cut(s)	82, 285
MnlI	CCTC	4 cut(s)	54, 229, 249, 355
MseI	TTAA	1 cut(s)	332
MspI	CCGG	2 cut(s)	98, 230
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	3 cut(s)	52, 175, 220
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	228, 352
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	68, 142
PkrI	GCNGC	4 cut(s)	27, 118, 121, 124
PleI	GAGTC	2 cut(s)	81, 285
PpsI	GAGTC	2 cut(s)	81, 285
PspEI	GGTNACC	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	228, 352
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	4 cut(s)	26, 117, 120, 123
Sau3AI	GATC	3 cut(s)	52, 175, 220
SchI	GAGTC	2 cut(s)	82, 285
SduI	GDGCHC	2 cut(s)	37, 199
SetI	ASST	6 cut(s)	65, 193, 228, 304, 352, 366
SfaNI	GCATC	1 cut(s)	12
SfcI	CTRYAG	1 cut(s)	170
SgrAI	CRCCGGYG	1 cut(s)	97
Sse9I	AATT	4 cut(s)	259, 312, 329, 339
SsiI	CCGC	6 cut(s)	9, 25, 50, 116, 119, 122
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	193, 304
TaqI	TCGA	3 cut(s)	66, 71, 193
TasI	AATT	4 cut(s)	259, 312, 329, 339
TauI	GCSGC	4 cut(s)	28, 119, 122, 125
TfiI	GAWTC	2 cut(s)	68, 142
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	59
XapI	RAATTY	1 cut(s)	259
ZraI	GACGTC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.