Rorug04G0153400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006308
Physical Location & Seq
Forward (+)
26943681 .. 26946600
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0153400.1

Sequence Viewer

Length: 597 bp
ATGTTGGGCTCTCGGGCTTCAAGATTTGGACTTTTGATACTGAAACAGCTTACCGGAGGAGGAGGAGGCAAATCCATTAGTAGACCAACATATGCAACTCGTTCTTTCAGCCAATTCTTGCAACCTCGGTATGATCAACAGTCCGGGACCAAGTTGTTCAGGGGAGCCATCTTTCAGAAGCATAATCATTTTTCTACCACCACTGCCAGCTCTTCAGATCAAGGGACTGAGCAGAAAGAAACGATATCTGTGACCTTTGTTGACAAGGATGGAGACGAAAAACATATAAAGGTTCCAATTGGGATGTCTATGCTAGAAGCTGCTCATCAAAATGATATAGAACTTGAAGGAGCCTGTGAAGGTTCACTTGCCTGTTCAACATGTCATGTGATTTTAATGGACGTGGAATATTACAACAAATTAGAAGACCCAACTGATGAGGAAAATGATATGTTGGACTTGGCATTTGGACTTACAGAAACGTCTCGTCTGGGTTGCCAAGTCATTGCAAGCCCCGAACTTGATGGAGTTCGTTTAGCTATTCCTGCTGCCACCCGAAATTTTGCTGTTGATGGCTATGTACCAAAACCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0002009 GO:0002165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007423 GO:0007444 GO:0007455 GO:0007469 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008037 GO:0008038 GO:0008144 GO:0008150 GO:0008152 GO:0008544 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009913 GO:0009987 GO:0010769 GO:0010975 GO:0016043 GO:0016301 GO:0016310 GO:0016358 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022008 GO:0022416 GO:0022603 GO:0022604 GO:0023052 GO:0030030 GO:0030154 GO:0030182 GO:0030424 GO:0030425 GO:0030554 GO:0030855 GO:0031175 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032990 GO:0035107 GO:0035114 GO:0035120 GO:0035214 GO:0035220 GO:0035239 GO:0035295 GO:0035315 GO:0035316 GO:0035317 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0045595 GO:0045664 GO:0048468 GO:0048513 GO:0048563 GO:0048569 GO:0048666 GO:0048667 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048800 GO:0048812 GO:0048813 GO:0048814 GO:0048856 GO:0048858 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0065007 GO:0070451 GO:0070593 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097447 GO:0097458 GO:0099568 GO:0120025 GO:0120035 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

198

Amino Acids

21.62

Weight (kDa)

5.34

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 88 - 170 4.3e-11 2Fe-2S iron-sulfur cluster binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 582
AflIII ACRYGT 1 cut(s) 380
AgsI TTSAA 3 cut(s) 21, 347, 378
AjiI CACGTC 1 cut(s) 403
AluBI AGCT 4 cut(s) 49, 210, 320, 539
AluI AGCT 4 cut(s) 49, 210, 320, 539
Alw26I GTCTC 2 cut(s) 267, 489
Ama87I CYCGRG 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 320, 548
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 147
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 432
BbvI GCAGC 2 cut(s) 307, 535
BccI CCATC 4 cut(s) 176, 263, 518, 566
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 267, 489
BfaI CTAG 2 cut(s) 314, 595
BisI GCNGC 2 cut(s) 321, 549
BlsI GCNGC 2 cut(s) 322, 550
Bme1390I CCNGG 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 4 cut(s) 148, 166, 294, 352
BmrFI CCNGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 274, 309
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 3 cut(s) 72, 75, 78
BseXI GCAGC 2 cut(s) 307, 535
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 54, 144
BslFI GGGAC 2 cut(s) 160, 238
BsmAI GTCTC 2 cut(s) 267, 489
BsmBI CGTCTC 2 cut(s) 267, 489
BsmFI GGGAC 2 cut(s) 160, 238
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 133, 217
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 4 cut(s) 148, 166, 294, 352
BspQI GCTCTTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 2 cut(s) 133, 217
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 208, 511
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 274, 309
BstKTI GATC 2 cut(s) 136, 220
BstMAI GTCTC 2 cut(s) 267, 489
BstMBI GATC 2 cut(s) 133, 217
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 307, 535
BstV2I GAAGAC 1 cut(s) 432
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 2 cut(s) 274, 309
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 208, 511
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 581
CviAII CATG 2 cut(s) 381, 386
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 1 cut(s) 228
DpnI GATC 2 cut(s) 135, 219
DpnII GATC 2 cut(s) 133, 217
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 11
Esp3I CGTCTC 2 cut(s) 267, 489
FaeI CATG 2 cut(s) 384, 389
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 2 cut(s) 160, 238
FatI CATG 2 cut(s) 380, 385
FauNDI CATATG 1 cut(s) 91
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 321, 549
FokI GGATG 2 cut(s) 281, 316
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 321, 549
FspBI CTAG 2 cut(s) 314, 595
GluI GCNGC 2 cut(s) 321, 549
HapII CCGG 2 cut(s) 54, 144
Hin1II CATG 2 cut(s) 384, 389
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HpaII CCGG 2 cut(s) 54, 144
Hpy166II GTNNAC 3 cut(s) 83, 262, 365
Hpy188I TCNGA 2 cut(s) 177, 217
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 3 cut(s) 83, 262, 365
HpyAV CCTTC 2 cut(s) 341, 353
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 402, 482
HpyCH4V TGCA 3 cut(s) 95, 121, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 2 cut(s) 402, 482
Hsp92II CATG 2 cut(s) 384, 389
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 133, 217
LguI GCTCTTC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 164, 350
LpnPI CCDG 8 cut(s) 67, 145, 157, 220, 367, 385, 476, 558
Lsp1109I GCAGC 2 cut(s) 307, 535
MaeI CTAG 2 cut(s) 314, 595
MaeII ACGT 2 cut(s) 402, 482
MaeIII GTNAC 1 cut(s) 250
MalI GATC 2 cut(s) 135, 219
MboI GATC 2 cut(s) 133, 217
MboII GAAGA 2 cut(s) 204, 437
MfeI CAATTG 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 4 cut(s) 113, 297, 419, 559
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 6 cut(s) 50, 53, 56, 59, 135, 433
MseI TTAA 1 cut(s) 395
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 2 cut(s) 54, 144
MspR9I CCNGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 545
NciI CCSGG 1 cut(s) 145
NdeI CATATG 1 cut(s) 91
NdeII GATC 2 cut(s) 133, 217
NlaIII CATG 2 cut(s) 384, 389
NlaIV GGNNCC 4 cut(s) 148, 166, 294, 352
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 1 cut(s) 384
PciI ACATGT 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 143
PkrI GCNGC 2 cut(s) 322, 550
PscI ACATGT 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 148, 166, 294, 352
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 2 cut(s) 321, 549
Sau3AI GATC 2 cut(s) 133, 217
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 1 cut(s) 11
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 330
Sse9I AATT 4 cut(s) 113, 297, 419, 559
SspI AATATT 1 cut(s) 410
SspMI CTAG 2 cut(s) 314, 595
StyD4I CCNGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 2 cut(s) 405, 485
TasI AATT 4 cut(s) 113, 297, 419, 559
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 2 cut(s) 320, 548
Tsp45I GTSAC 1 cut(s) 250
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 559
XceI RCATGY 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 2 cut(s) 314, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.