Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006308

Physical Location & Seq

Genomic Coordinates Reverse (-)

26947110 .. 26947833

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0153500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTTGGTAAAGTTGAGGAGCATGGCTGCCCAAGCCAAAAGGTTGCAGGTCAGGAATGTGAAAGCTCCTTATAGACAAGCTTCAATCTTTGCACCAGAGAAGATGCATTTTCTCTTCAGGGTTGGATTGTGGCATGACACCAAGAAATTAGGGTTTGCAGCTAAGAATTGGGGTGGTGTAGGGGGACCGTCAAGGTTTTGCTTCCCGGACAAAAATGGCCAAGGAGGGAATGTATGCCTTTTCAATCAGCAATATGGAGCGAGTCGGGTCGAATCTCCAGAGTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0002009 GO:0002165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007423 GO:0007444 GO:0007455 GO:0007469 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008037 GO:0008038 GO:0008144 GO:0008150 GO:0008152 GO:0008544 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009913 GO:0009987 GO:0010769 GO:0010975 GO:0016043 GO:0016301 GO:0016310 GO:0016358 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022008 GO:0022416 GO:0022603 GO:0022604 GO:0023052 GO:0030030 GO:0030154 GO:0030182 GO:0030424 GO:0030425 GO:0030554 GO:0030855 GO:0031175 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032990 GO:0035107 GO:0035114 GO:0035120 GO:0035214 GO:0035220 GO:0035239 GO:0035295 GO:0035315 GO:0035316 GO:0035317 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0045595 GO:0045664 GO:0048468 GO:0048513 GO:0048563 GO:0048569 GO:0048666 GO:0048667 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048800 GO:0048812 GO:0048813 GO:0048814 GO:0048856 GO:0048858 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0065007 GO:0070451 GO:0070593 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097447 GO:0097458 GO:0099568 GO:0120025 GO:0120035 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

96

Amino Acids

10.77

Weight (kDa)

10.18

Isoelectric Point (pI)

53.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09890 AT5G09890
fragaria_vesca	FvH4_2g34390 FvH4_2g34390
malus_domestica	MD08G1101000.v1.1 MD15G1082200.v1.1
prunus_persica	Prupe.1G434900_v2.0.a1
pyrus_communis	pycom08g08160 pycom15g07700
rosa_chinensis	RchiOBHm_Chr6g0307981 RchiOBHm_Chr6g0307991
rosa_laevigata	RLG00000010681
rosa_multiflora	Rmu_sc0006237.1_g000004 Rmu_sc0006237.1_g000005 Rmu_sc0006237.1_g000006
rosa_roxburghii	Rroxscaffold_7G00160700
rosa_rugosa	Rorug04G0153400 Rorug04G0153400 Rorug04G0153500 Rorug06G0362900 Rorug06G0362900 Rorug06G0362900
rosa_samantha	Rh6AG471400 Rh6BG482300 Rh6DG473800 Rh6DG473900
rosa_wichuraiana	Rw6G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	84, 244
AluBI	AGCT	3 cut(s)	65, 80, 161
AluI	AGCT	3 cut(s)	65, 80, 161
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	26, 158
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	13, 170
BcnI	CCSGG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	2 cut(s)	27, 159
BlsI	GCNGC	2 cut(s)	28, 160
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
BseDI	CCNNGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	13, 170
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	13, 170
BsuRI	GGCC	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	2 cut(s)	22, 134
CviJI	RGCY	6 cut(s)	26, 35, 65, 80, 161, 219
CviKI_1	RGCY	6 cut(s)	26, 35, 65, 80, 161, 219
DdeI	CTNAG	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	25, 137
FaiI	YATR	5 cut(s)	23, 72, 135, 235, 255
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	21, 133
Fnu4HI	GCNGC	2 cut(s)	27, 159
Fsp4HI	GCNGC	2 cut(s)	27, 159
GluI	GCNGC	2 cut(s)	27, 159
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	2 cut(s)	25, 137
HindIII	AAGCTT	1 cut(s)	78
HinfI	GANTC	2 cut(s)	262, 272
HpaII	CCGG	1 cut(s)	206
Hpy188III	TCNNGA	2 cut(s)	52, 278
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	46, 92, 106, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	25, 137
LmnI	GCTCC	3 cut(s)	18, 70, 257
LpnPI	CCDG	5 cut(s)	32, 37, 103, 108, 219
Lsp1109I	GCAGC	2 cut(s)	13, 170
LweI	GCATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	106, 112
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	2 cut(s)	146, 166
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	103, 264
MnlI	CCTC	2 cut(s)	9, 218
Mox20I	TGGCCA	1 cut(s)	219
Mph1103I	ATGCAT	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	206
NlaIII	CATG	2 cut(s)	25, 137
NlaIV	GGNNCC	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	272
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	28, 160
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	185
SatI	GCNGC	2 cut(s)	27, 159
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	6 cut(s)	44, 51, 67, 82, 163, 197
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	2 cut(s)	146, 166
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	146, 166
TfiI	GAWTC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	26, 158
VpaK11BI	GGWCC	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.