Rh6AG471400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006308
Physical Location & Seq
Reverse (-)
65408434 .. 65410347
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG471400.1

Sequence Viewer

Length: 774 bp
ATGGAAGGCGGAGACGGGACGATACGGCTCGGGGCTCTCAACATGAAGGCGGATCGGGTGAGGTTCAATTCGAGTCCCGATGTGTCGGTTTCGTCGCCGGTGACCAAGCAGAAGGCGGCGGCGGCCAAGCAGTTTATTGAGAATCACTACAAGAACTATCTACAAGGACTACAGGATCGGCAAGAGAGACGTCGAGCACTTCAAAGGAAAGTGCAAGAAGATCAGGTACCGGCTGAGGAACAAGAAGAGATGATGAGGAATTTGGCACGCCGAGAAACAGAATATATGAGACTCCAAAGACGTAAAATCGGAATTGATGATTTTGAGCAATTAACTGTAATTGGAAAAGGTGCATTTAGCGAGGTAAGATTATGCCATGCAAAAGGTACAGGAGAGATTTTCGCAATGAAGAAATTGAAGAAATCAGAGATGCTTAGCCGTGGACAGGTTGAACATGTGCGTTCTGAGAGAAATTTGCTTGCTGAGGTTGATAGTCGGTGTATTGTGAAACTTTATTATTCATTTCAAGATTCCGATTTCTTATACCTTATCATGGAGTATTTACCCGGTGGTGACATTATGACATTATTGATGAGAGAAGATACTCTTTCTGAAGATGTTGCACGTTTTTATATGGGAGAGAGTATTCTGGCTATTCACTCAATCCATCAACACAACTATGTTCATAGGGACATAAAACCAGACAATCTGATACTGGATAAAACTGGCCATTTGAAGCTTTCAGATTTTGGCTTGTGTAAACCCTCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0002009 GO:0002165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0007423 GO:0007444 GO:0007455 GO:0007469 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008037 GO:0008038 GO:0008144 GO:0008150 GO:0008152 GO:0008544 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009913 GO:0009987 GO:0010769 GO:0010975 GO:0016043 GO:0016301 GO:0016310 GO:0016358 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022008 GO:0022416 GO:0022603 GO:0022604 GO:0023052 GO:0030030 GO:0030154 GO:0030182 GO:0030424 GO:0030425 GO:0030554 GO:0030855 GO:0031175 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032990 GO:0035107 GO:0035114 GO:0035120 GO:0035214 GO:0035220 GO:0035239 GO:0035295 GO:0035315 GO:0035316 GO:0035317 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0045595 GO:0045664 GO:0048468 GO:0048513 GO:0048563 GO:0048569 GO:0048666 GO:0048667 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048800 GO:0048812 GO:0048813 GO:0048814 GO:0048856 GO:0048858 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0065007 GO:0070451 GO:0070593 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097447 GO:0097458 GO:0099568 GO:0120025 GO:0120035 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

257

Amino Acids

29.6

Weight (kDa)

8.32

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 108 - 254 3e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 111 - 254 6.2e-20 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 182 - 254 6.1e-06 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 193
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 226
AciI CCGC 5 cut(s) 9, 50, 116, 119, 122
AclWI GGATC 2 cut(s) 60, 183
AcoI YGGCCR 2 cut(s) 123, 727
AcsI RAATTY 2 cut(s) 259, 472
AcuI CTGAAG 1 cut(s) 633
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 2 cut(s) 228, 388
AfiI CCNNNNNNNGG 2 cut(s) 445, 553
AflIII ACRYGT 1 cut(s) 454
AgsI TTSAA 6 cut(s) 67, 203, 418, 452, 527, 736
AluBI AGCT 1 cut(s) 739
AluI AGCT 1 cut(s) 739
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 3 cut(s) 6, 181, 283
AlwI GGATC 2 cut(s) 60, 183
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 2 cut(s) 123, 727
ApoI RAATTY 2 cut(s) 259, 472
Asp718I GGTACC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 3 cut(s) 70, 112, 584
AvaI CYCGRG 1 cut(s) 29
BalI TGGCCA 1 cut(s) 729
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
Bbv12I GWGCWC 1 cut(s) 199
BbvCI CCTCAGC 2 cut(s) 234, 483
BccI CCATC 1 cut(s) 675
BceAI ACGGC 2 cut(s) 41, 423
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 3 cut(s) 6, 181, 283
BfmI CTRYAG 1 cut(s) 170
BisI GCNGC 3 cut(s) 117, 120, 123
BlpI GCTNAGC 1 cut(s) 434
BlsI GCNGC 3 cut(s) 118, 121, 124
Bme1390I CCNGG 1 cut(s) 567
BmeT110I CYCGRG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 420
Bpu10I CCTNAGC 2 cut(s) 234, 483
Bpu1102I GCTNAGC 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 439
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 553
Bse118I RCCGGY 2 cut(s) 97, 229
Bse1I ACTGG 2 cut(s) 720, 730
Bse3DI GCAATG 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 445, 553
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 3 cut(s) 225, 456, 474
BseNI ACTGG 2 cut(s) 720, 730
BshFI GGCC 2 cut(s) 125, 729
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 3 cut(s) 98, 230, 567
BslFI GGGAC 3 cut(s) 31, 60, 704
BslI CCNNNNNNNGG 2 cut(s) 445, 553
BsmAI GTCTC 3 cut(s) 6, 181, 283
BsmBI CGTCTC 2 cut(s) 6, 181
BsmFI GGGAC 3 cut(s) 31, 60, 704
BsnI GGCC 2 cut(s) 125, 729
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 37, 199
Bsp143I GATC 3 cut(s) 52, 175, 220
Bsp1720I GCTNAGC 1 cut(s) 434
BspACI CCGC 5 cut(s) 9, 50, 116, 119, 122
BspANI GGCC 2 cut(s) 125, 729
BspCNI CTCAG 3 cut(s) 226, 457, 475
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 2 cut(s) 60, 183
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 411
BsrFI RCCGGY 2 cut(s) 97, 229
BsrI ACTGG 2 cut(s) 720, 730
BssAI RCCGGY 2 cut(s) 97, 229
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 3 cut(s) 52, 175, 220
BssNI GRCGYC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 268, 480
BstDEI CTNAG 4 cut(s) 234, 434, 465, 483
BstDSI CCRYGG 1 cut(s) 439
BstEII GGTNACC 1 cut(s) 100
BstKTI GATC 3 cut(s) 55, 178, 223
BstMAI GTCTC 3 cut(s) 6, 181, 283
BstMBI GATC 3 cut(s) 52, 175, 220
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 458
BstPI GGTNACC 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 565
BstSFI CTRYAG 1 cut(s) 170
BsuRI GGCC 2 cut(s) 125, 729
BtgI CCRYGG 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 268, 480
Cfr10I RCCGGY 2 cut(s) 97, 229
Csp6I GTAC 2 cut(s) 227, 387
CviAII CATG 4 cut(s) 43, 377, 455, 553
CviJI RGCY 9 cut(s) 28, 35, 125, 233, 438, 653, 729, 739, 753
CviKI_1 RGCY 9 cut(s) 28, 35, 125, 233, 438, 653, 729, 739, 753
CviQI GTAC 2 cut(s) 227, 387
DdeI CTNAG 4 cut(s) 234, 434, 465, 483
DpnI GATC 3 cut(s) 54, 177, 222
DpnII GATC 3 cut(s) 52, 175, 220
EaeI YGGCCR 2 cut(s) 123, 727
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 2 cut(s) 24, 65
Eco24I GRGCYC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 37
Esp3I CGTCTC 2 cut(s) 6, 181
FaeI CATG 4 cut(s) 46, 380, 458, 556
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FaqI GGGAC 3 cut(s) 31, 60, 704
FatI CATG 4 cut(s) 42, 376, 454, 552
Fnu4HI GCNGC 3 cut(s) 117, 120, 123
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 3 cut(s) 117, 120, 123
GluI GCNGC 3 cut(s) 117, 120, 123
HaeIII GGCC 2 cut(s) 125, 729
HapII CCGG 3 cut(s) 98, 230, 567
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 4 cut(s) 46, 380, 458, 556
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 4 cut(s) 73, 142, 291, 530
HpaII CCGG 3 cut(s) 98, 230, 567
HphI GGTGA 3 cut(s) 70, 112, 584
Hpy166II GTNNAC 2 cut(s) 443, 761
Hpy188I TCNGA 7 cut(s) 311, 427, 466, 535, 613, 711, 745
Hpy188III TCNNGA 3 cut(s) 77, 527, 768
Hpy8I GTNNAC 2 cut(s) 443, 761
Hpy99I CGWCG 2 cut(s) 97, 195
HpyAV CCTTC 2 cut(s) 40, 106
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 3 cut(s) 190, 301, 625
HpyCH4V TGCA 4 cut(s) 214, 353, 380, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 4 cut(s) 234, 434, 465, 483
HpySE526I ACGT 3 cut(s) 190, 301, 625
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 4 cut(s) 46, 380, 458, 556
KpnI GGTACC 1 cut(s) 230
Kzo9I GATC 3 cut(s) 52, 175, 220
LweI GCATC 1 cut(s) 420
MaeII ACGT 3 cut(s) 190, 301, 625
MaeIII GTNAC 2 cut(s) 100, 572
MalI GATC 3 cut(s) 54, 177, 222
MboI GATC 3 cut(s) 52, 175, 220
MboII GAAGA 6 cut(s) 230, 257, 421, 430, 611, 626
MhlI GDGCHC 2 cut(s) 37, 199
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 7 cut(s) 67, 259, 312, 329, 339, 413, 472
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 2 cut(s) 82, 285
MnlI CCTC 5 cut(s) 54, 229, 249, 355, 478
Mox20I TGGCCA 1 cut(s) 729
MscI TGGCCA 1 cut(s) 729
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 1 cut(s) 729
MspI CCGG 3 cut(s) 98, 230, 567
MspR9I CCNGG 1 cut(s) 567
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 567
NdeII GATC 3 cut(s) 52, 175, 220
NlaIII CATG 4 cut(s) 46, 380, 458, 556
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 296
NmuCI GTSAC 2 cut(s) 100, 572
NspI RCATGY 1 cut(s) 458
PciI ACATGT 1 cut(s) 454
PfeI GAWTC 2 cut(s) 142, 530
PkrI GCNGC 3 cut(s) 118, 121, 124
PleI GAGTC 2 cut(s) 81, 285
PpsI GAGTC 2 cut(s) 81, 285
PscI ACATGT 1 cut(s) 454
PspEI GGTNACC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 228
RsaI GTAC 2 cut(s) 228, 388
RsaNI GTAC 2 cut(s) 227, 387
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 3 cut(s) 117, 120, 123
Sau3AI GATC 3 cut(s) 52, 175, 220
SchI GAGTC 2 cut(s) 82, 285
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 2 cut(s) 37, 199
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 170
SgrAI CRCCGGYG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 678
Sse9I AATT 7 cut(s) 67, 259, 312, 329, 339, 413, 472
SsiI CCGC 5 cut(s) 9, 50, 116, 119, 122
StyD4I CCNGG 1 cut(s) 565
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 3 cut(s) 193, 304, 628
TaqI TCGA 2 cut(s) 71, 193
TasI AATT 7 cut(s) 67, 259, 312, 329, 339, 413, 472
TauI GCSGC 3 cut(s) 119, 122, 125
TfiI GAWTC 2 cut(s) 142, 530
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseFI GTSAC 2 cut(s) 100, 572
Tsp45I GTSAC 2 cut(s) 100, 572
TspDTI ATGAA 4 cut(s) 59, 422, 510, 674
XapI RAATTY 2 cut(s) 259, 472
XceI RCATGY 1 cut(s) 458
ZraI GACGTC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.