Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006320.1

Orthogroup ID

OG0008451

Physical Location & Seq

Genomic Coordinates Forward (+)

9973 .. 11375

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006320.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggctgatgctatatcgagcttctggggtcctgtcacatcaacgatcgagtgttgtgagaagaactatgcctactcttcttatattgcggaatttttcaacaccatgtcgaacattcccagcatactcttggcactcattggtcttataaatgctctaaggcagcggtttgagaagagatttagtgttcttcatatatctaatatgatacttgccattgggagcatgttataccacgctacactgcagcacgttcaacagcagagcgatgagactcctatggtttgggagatgctcctatacatgtatatcctctactccccagattggcactatcgcactacaatgccgaccttcctcttcctatatggtgttgtttttgctgcagttcattcagtgttccgatttgagattggttttaaggtgcactatgtgatcttgtgtcttctttgcatacctcgaatgtacaagtattatatatacacacaggacgtctatgccaagaggctcgcaaagctgtatgtggccactcttcttatagggagtttgtgttggctcggcgataatgttttctgcaaagagatatccagttggcccgttaacccacaaggtcatgccttgtggcatgtattcatgggttttaattcctattttgctaacactttcttgatgttttgccgggctgaacaacgaggatgggctcctaagattgttcgttttatgggtctcttgccctatgtgaagattgaaaaaccaaaaacccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0002238 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006066 GO:0006629 GO:0006643 GO:0006665 GO:0006670 GO:0006671 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0008152 GO:0008284 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009814 GO:0009987 GO:0010025 GO:0010033 GO:0010119 GO:0010166 GO:0012505 GO:0016020 GO:0016021 GO:0016787 GO:0016798 GO:0016810 GO:0016811 GO:0017040 GO:0019751 GO:0030104 GO:0030148 GO:0030173 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0033993 GO:0034311 GO:0034312 GO:0034641 GO:0042127 GO:0042175 GO:0042221 GO:0042592 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046165 GO:0046173 GO:0046467 GO:0046512 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0070774 GO:0071602 GO:0071704 GO:0090333 GO:0097164 GO:0097305 GO:0098542 GO:0098588 GO:0098791 GO:0098827 GO:1901564 GO:1901566 GO:1901568 GO:1901570 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 map00600

Pfam Domains

Protein Families

Ceramidase

Protein Analysis

255

Amino Acids

29.81

Weight (kDa)

8.87

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22330
fragaria_vesca	FvH4_3g01070 FvH4_3g01070
malus_domestica	MD05G1357000.v1.1 MD10G1330700.v1.1
prunus_persica	Prupe.4G011800_v2.0.a1
pyrus_communis	pycom05g32300 pycom10g28010
rosa_chinensis	RchiOBHm_Chr5g0001611
rosa_laevigata	RLG00000030948
rosa_multiflora	Rmu_co8400549.1_g000001 Rmu_sc0006320.1_g000004 Rmu_sc0008804.1_g000009
rosa_roxburghii	Rroxscaffold_1G00074700
rosa_rugosa	Rorug04G0391400 Rorug04G0391400 Rorug04G0391400 Rorug04G0391400
rosa_samantha	Rh5AG012900 Rh5BG015800 Rh5CG013900 Rh5DG013700
rosa_wichuraiana	Rw5G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AatII	GACGTC	1 cut(s)	495
AciI	CCGC	2 cut(s)	89, 166
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	100, 257, 749
AluBI	AGCT	2 cut(s)	21, 517
AluI	AGCT	2 cut(s)	21, 517
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	266, 731
Alw44I	GTGCAC	1 cut(s)	425
AoxI	GGCC	2 cut(s)	525, 593
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	3 cut(s)	163, 247, 383
ApoI	RAATTY	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	29, 594
AsuC2I	CCSGG	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	175, 259, 370
BccI	CCATC	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	2 cut(s)	266, 731
BfmI	CTRYAG	2 cut(s)	245, 384
BisI	GCNGC	3 cut(s)	164, 248, 384
BlsI	GCNGC	3 cut(s)	165, 249, 385
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 594
BmiI	GGNNCC	2 cut(s)	30, 702
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	680
BsaHI	GRCGYC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	731
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	588
BseGI	GGATG	1 cut(s)	701
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	588
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	175, 259, 370
BseYI	CCCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	527, 595
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	679
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	2 cut(s)	266, 731
BsnI	GGCC	2 cut(s)	527, 595
Bso31I	GGTCTC	1 cut(s)	731
Bsp1286I	GDGCHC	2 cut(s)	429, 703
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	45, 435
BspACI	CCGC	2 cut(s)	89, 166
BspANI	GGCC	2 cut(s)	527, 595
BspLI	GGNNCC	2 cut(s)	30, 702
BspMAI	CTGCAG	2 cut(s)	249, 388
BspTNI	GGTCTC	1 cut(s)	731
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	588
BssMI	GATC	2 cut(s)	45, 435
BssNI	GRCGYC	1 cut(s)	492
Bst6I	CTCTTC	4 cut(s)	82, 170, 365, 537
BstACI	GRCGYC	1 cut(s)	492
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	2 cut(s)	158, 705
BstF5I	GGATG	1 cut(s)	701
BstKTI	GATC	2 cut(s)	48, 438
BstMAI	GTCTC	2 cut(s)	266, 731
BstMBI	GATC	2 cut(s)	45, 435
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNSI	RCATGY	3 cut(s)	229, 307, 629
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	2 cut(s)	245, 384
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	175, 259, 370
BstV2I	GAAGAC	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	527, 595
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	701
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	242, 402
Cac8I	GCNNGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	29, 594
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	6 cut(s)	106, 226, 304, 614, 626, 634
CviJI	RGCY	9 cut(s)	5, 21, 508, 517, 527, 556, 595, 683, 701
CviKI_1	RGCY	9 cut(s)	5, 21, 508, 517, 527, 556, 595, 683, 701
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	2 cut(s)	158, 705
DpnI	GATC	2 cut(s)	47, 437
DpnII	GATC	2 cut(s)	45, 435
DraIII	CACNNNGTG	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	4 cut(s)	82, 170, 365, 537
EarI	CTCTTC	4 cut(s)	82, 170, 365, 537
Eco24I	GRGCYC	1 cut(s)	703
Eco31I	GGTCTC	1 cut(s)	731
Eco32I	GATATC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	703
FaeI	CATG	6 cut(s)	109, 229, 307, 617, 629, 637
FatI	CATG	6 cut(s)	105, 225, 303, 613, 625, 633
Fnu4HI	GCNGC	3 cut(s)	164, 248, 384
FokI	GGATG	1 cut(s)	708
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	3 cut(s)	164, 248, 384
GluI	GCNGC	3 cut(s)	164, 248, 384
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	527, 595
HapII	CCGG	1 cut(s)	679
Hin1I	GRCGYC	1 cut(s)	492
Hin1II	CATG	6 cut(s)	109, 229, 307, 617, 629, 637
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	1 cut(s)	274
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	679
Hpy166II	GTNNAC	2 cut(s)	427, 601
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	1 cut(s)	667
Hpy8I	GTNNAC	2 cut(s)	427, 601
HpyAV	CCTTC	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	252, 492
HpyCH4V	TGCA	5 cut(s)	247, 386, 427, 453, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	2 cut(s)	158, 705
HpySE526I	ACGT	2 cut(s)	252, 492
Hsp92I	GRCGYC	1 cut(s)	492
Hsp92II	CATG	6 cut(s)	109, 229, 307, 617, 629, 637
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	45, 435
LmnI	GCTCC	3 cut(s)	222, 300, 706
LpnPI	CCDG	7 cut(s)	10, 45, 133, 336, 473, 601, 692
Lsp1109I	GCAGC	3 cut(s)	175, 259, 370
LweI	GCATC	1 cut(s)	282
MaeII	ACGT	2 cut(s)	252, 492
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	47, 437
MboI	GATC	2 cut(s)	45, 435
MboII	GAAGA	8 cut(s)	69, 73, 182, 187, 352, 437, 524, 754
MhlI	GDGCHC	2 cut(s)	429, 703
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	2 cut(s)	92, 643
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	5 cut(s)	323, 368, 468, 498, 686
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	3 cut(s)	420, 600, 642
MslI	CAYNNNNRTG	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	679
MspR9I	CCNGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	680
NdeII	GATC	2 cut(s)	45, 435
NlaIII	CATG	6 cut(s)	109, 229, 307, 617, 629, 637
NlaIV	GGNNCC	2 cut(s)	30, 702
NmeAIII	GCCGAG	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	3 cut(s)	229, 307, 629
PciI	ACATGT	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	165, 249, 385
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	29
PscI	ACATGT	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	30, 702
PspPI	GGNCC	2 cut(s)	29, 594
PspPPI	RGGWCCY	1 cut(s)	29
PsrI	GAACNNNNNNTAC	2 cut(s)	56, 88
PstI	CTGCAG	2 cut(s)	249, 388
PvuI	CGATCG	1 cut(s)	48
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	420, 600, 642
SatI	GCNGC	3 cut(s)	164, 248, 384
Sau3AI	GATC	2 cut(s)	45, 435
Sau96I	GGNCC	2 cut(s)	29, 594
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	2 cut(s)	429, 703
SetI	ASST	8 cut(s)	23, 255, 356, 426, 460, 495, 519, 613
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	2 cut(s)	245, 384
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	92, 643
SsiI	CCGC	2 cut(s)	89, 166
StyD4I	CCNGG	1 cut(s)	678
TaiI	ACGT	2 cut(s)	255, 495
TaqI	TCGA	4 cut(s)	17, 48, 110, 460
TasI	AATT	2 cut(s)	92, 643
TatI	WGTACW	1 cut(s)	465
Tru1I	TTAA	3 cut(s)	420, 600, 642
Tru9I	TTAA	3 cut(s)	420, 600, 642
TscAI	CASTG	2 cut(s)	249, 402
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	163, 247, 383
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	3 cut(s)	182, 380, 622
TspRI	CASTG	2 cut(s)	249, 402
VneI	GTGCAC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	3 cut(s)	229, 307, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
ZraI	GACGTC	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.