Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006326.1

Orthogroup ID

OG0018483

Physical Location & Seq

Genomic Coordinates Reverse (-)

86987 .. 88545

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgctccaccaccagatatggaactctctttctcggcatcaaactgccaaaggcaaaggccgaatcaacgacagtggacttgaattcgaacaagttgaccgagaaagtaattgggatgaccagataatattggctgcaattctattctacctagtcggcagctacctgcctggggctcaaaatctacctttttggaggatagatggagttattgtcacaatgctgattcatgctggtccagtagagttcatctactactggtttcacatagcacttcaccatcatttcctctactctcgctaccattctcaccaccattcctctattgtccttgagccaattacttctgtgactcacacgtttgccgagcacatagcatatcacgtgctcttcgcaataccactgatgattactgcattgatgggatcagcttcaatcgtatcctattttggttatgtgacttatattgacttcatgaacaatatggggcactgcaatttcgagctcattccagattggattttctctcttttcccccctctcaagtatctcatgtattctccgacgttccactctctccaccacacacaattccgaaccaattactcgctcttcatgccgatctacgaccacttatatggcaccgtggacaagtcttctgattctctatatgagttttccctcaaaagagaggaggaatcaccagatgtcctgcatctaagccatcttacaacagttgaatccatttatcatctacctctagggtttgcttccttggcctctaaatcattcacatcaacatggtacttgtggttggtgtggcctgtcacactgtggtctgtgatgctcacctggatatacggccgtacatttgtgtacttgatgcaatgggaaaatgacgctatcaacaacttgattgagaaagctatacttgaagcagaggaaaagggtgtcaaagttttaagtttaggtctcatgaatcaggcaaggatctccactatttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

335

Amino Acids

39.02

Weight (kDa)

6.05

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	79 - 215	1.7e-19	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018483)

Species	Orthologous Gene IDs
malus_domestica	MD02G1227000.v1.1 MD07G1086500.v1.1 MD13G1075300.v1.1
prunus_persica	Prupe.2G112900_v2.0.a1 Prupe.2G112900_v2.0.a1 Prupe.3G128800_v2.0.a1
rosa_multiflora	Rmu_sc0000335.1_g000025 Rmu_sc0006326.1_g000029
rosa_rugosa	Rorug01G0166900
rosa_samantha	Rh1AG182600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	641
AclWI	GGATC	2 cut(s)	433, 998
AcoI	YGGCCR	1 cut(s)	862
AcsI	RAATTY	1 cut(s)	83
AcvI	CACGTG	1 cut(s)	385
AdeI	CACNNNGTG	1 cut(s)	834
AfaI	GTAC	3 cut(s)	806, 868, 878
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	83, 435, 740, 935
AjnI	CCWGG	2 cut(s)	169, 851
AluBI	AGCT	4 cut(s)	162, 431, 505, 926
AluI	AGCT	4 cut(s)	162, 431, 505, 926
Alw21I	GWGCWC	3 cut(s)	372, 390, 507
Alw26I	GTCTC	1 cut(s)	977
AlwI	GGATC	2 cut(s)	433, 998
AoxI	GGCC	4 cut(s)	58, 777, 821, 862
ApeKI	GCWGC	2 cut(s)	134, 159
ApoI	RAATTY	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	4 cut(s)	269, 302, 693, 841
AsuII	TTCGAA	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	2 cut(s)	178, 507
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	3 cut(s)	372, 390, 507
BbvI	GCAGC	2 cut(s)	121, 171
BccI	CCATC	4 cut(s)	197, 288, 415, 732
BceAI	ACGGC	2 cut(s)	849, 877
BciT130I	CCWGG	2 cut(s)	171, 853
BciVI	GTATCC	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	977
BfaI	CTAG	2 cut(s)	152, 761
BfuAI	ACCTGC	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	451
BisI	GCNGC	2 cut(s)	135, 160
BlsI	GCNGC	2 cut(s)	136, 161
Bme1390I	CCNGG	2 cut(s)	171, 853
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	2 cut(s)	171, 853
BmsI	GCATC	4 cut(s)	46, 724, 834, 873
BpiI	GAAGAC	1 cut(s)	648
Bpu14I	TTCGAA	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	353, 527
BsaAI	YACGTR	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	3 cut(s)	170, 645, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	239, 263
Bse3DI	GCAATG	1 cut(s)	893
BseBI	CCWGG	2 cut(s)	171, 853
BseDI	CCNNGG	3 cut(s)	170, 645, 774
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	893
BseNI	ACTGG	2 cut(s)	239, 263
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	492
BseX3I	CGGCCG	1 cut(s)	862
BseXI	GCAGC	2 cut(s)	121, 171
Bsh1285I	CGRYCG	1 cut(s)	865
BshFI	GGCC	4 cut(s)	60, 779, 823, 864
BshNI	GGYRCC	1 cut(s)	641
BsiEI	CGRYCG	1 cut(s)	865
BsiHKAI	GWGCWC	3 cut(s)	372, 390, 507
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	977
BsnI	GGCC	4 cut(s)	60, 779, 823, 864
Bso31I	GGTCTC	1 cut(s)	977
Bsp119I	TTCGAA	1 cut(s)	87
Bsp1286I	GDGCHC	5 cut(s)	178, 372, 390, 492, 507
Bsp143I	GATC	3 cut(s)	425, 621, 990
BspANI	GGCC	4 cut(s)	60, 779, 823, 864
BspHI	TCATGA	2 cut(s)	474, 975
BspLI	GGNNCC	1 cut(s)	643
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	433, 998
BspQI	GCTCTTC	2 cut(s)	395, 617
BspT104I	TTCGAA	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	893
BsrI	ACTGG	2 cut(s)	239, 263
BssECI	CCNNGG	3 cut(s)	170, 645, 774
BssMI	GATC	3 cut(s)	425, 621, 990
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	2 cut(s)	171, 853
Bst4CI	ACNGT	4 cut(s)	74, 646, 736, 834
Bst6I	CTCTTC	2 cut(s)	395, 617
BstBAI	YACGTR	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	719
BstDSI	CCRYGG	1 cut(s)	645
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	3 cut(s)	428, 624, 993
BstMAI	GTCTC	1 cut(s)	977
BstMBI	GATC	3 cut(s)	425, 621, 990
BstMCI	CGRYCG	1 cut(s)	865
BstMWI	GCNNNNNNNGC	2 cut(s)	616, 776
BstNI	CCWGG	2 cut(s)	171, 853
BstSCI	CCNGG	2 cut(s)	169, 851
BstSLI	GKGCMC	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	121, 171
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	1 cut(s)	990
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	990
BstZI	CGGCCG	1 cut(s)	862
BsuI	GTATCC	1 cut(s)	451
BsuRI	GGCC	4 cut(s)	60, 779, 823, 864
BtgI	CCRYGG	1 cut(s)	645
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	4 cut(s)	79, 401, 490, 830
BveI	ACCTGC	1 cut(s)	174
CciI	TCATGA	2 cut(s)	474, 975
Cfr13I	GGNCC	1 cut(s)	236
CseI	GACGC	1 cut(s)	908
Csp6I	GTAC	3 cut(s)	805, 867, 877
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	6 cut(s)	230, 475, 553, 616, 801, 976
CviQI	GTAC	3 cut(s)	805, 867, 877
DdeI	CTNAG	1 cut(s)	719
DpnI	GATC	3 cut(s)	427, 623, 992
DpnII	GATC	3 cut(s)	425, 621, 990
DraIII	CACNNNGTG	1 cut(s)	834
EaeI	YGGCCR	1 cut(s)	862
EagI	CGGCCG	1 cut(s)	862
Eam1104I	CTCTTC	2 cut(s)	395, 617
EarI	CTCTTC	2 cut(s)	395, 617
Ecl136II	GAGCTC	1 cut(s)	505
EclXI	CGGCCG	1 cut(s)	862
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	2 cut(s)	178, 507
Eco31I	GGTCTC	1 cut(s)	977
Eco47I	GGWCC	1 cut(s)	236
Eco52I	CGGCCG	1 cut(s)	862
Eco53kI	GAGCTC	1 cut(s)	505
Eco72I	CACGTG	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	169, 851
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	2 cut(s)	178, 507
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	6 cut(s)	233, 478, 556, 619, 804, 979
FalI	AAGNNNNNCTT	2 cut(s)	915, 947
FatI	CATG	6 cut(s)	229, 474, 552, 615, 800, 975
Fnu4HI	GCNGC	2 cut(s)	135, 160
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	2 cut(s)	178, 507
Fsp4HI	GCNGC	2 cut(s)	135, 160
FspBI	CTAG	2 cut(s)	152, 761
GluI	GCNGC	2 cut(s)	135, 160
HaeIII	GGCC	4 cut(s)	60, 779, 823, 864
HgaI	GACGC	1 cut(s)	908
Hin1II	CATG	6 cut(s)	233, 478, 556, 619, 804, 979
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	7 cut(s)	63, 226, 352, 662, 698, 740, 979
HphI	GGTGA	4 cut(s)	269, 302, 693, 841
Hpy166II	GTNNAC	4 cut(s)	77, 97, 649, 877
Hpy188I	TCNGA	3 cut(s)	564, 596, 661
Hpy188III	TCNNGA	3 cut(s)	475, 512, 976
Hpy8I	GTNNAC	4 cut(s)	77, 97, 649, 877
Hpy99I	CGWCG	1 cut(s)	568
HpyCH4III	ACNGT	4 cut(s)	74, 646, 736, 834
HpyCH4IV	ACGT	3 cut(s)	359, 384, 566
HpyCH4V	TGCA	5 cut(s)	137, 416, 495, 715, 886
HpyF10VI	GCNNNNNNNGC	2 cut(s)	616, 776
HpyF3I	CTNAG	1 cut(s)	719
HpySE526I	ACGT	3 cut(s)	359, 384, 566
Hsp92II	CATG	6 cut(s)	233, 478, 556, 619, 804, 979
Kzo9I	GATC	3 cut(s)	425, 621, 990
LguI	GCTCTTC	2 cut(s)	395, 617
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	2 cut(s)	121, 171
LweI	GCATC	4 cut(s)	46, 724, 834, 873
MaeI	CTAG	2 cut(s)	152, 761
MaeII	ACGT	3 cut(s)	359, 384, 566
MaeIII	GTNAC	4 cut(s)	214, 349, 457, 826
MalI	GATC	3 cut(s)	427, 623, 992
MboI	GATC	3 cut(s)	425, 621, 990
MboII	GAAGA	3 cut(s)	382, 604, 648
MflI	RGATCY	1 cut(s)	990
MhlI	GDGCHC	5 cut(s)	178, 372, 390, 492, 507
MluCI	AATT	7 cut(s)	83, 109, 138, 339, 496, 590, 601
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	587
MseI	TTAA	2 cut(s)	962, 1006
MslI	CAYNNNNRTG	2 cut(s)	636, 799
MspR9I	CCNGG	2 cut(s)	171, 853
MvaI	CCWGG	2 cut(s)	171, 853
MwoI	GCNNNNNNNGC	2 cut(s)	616, 776
NdeII	GATC	3 cut(s)	425, 621, 990
NlaIII	CATG	6 cut(s)	233, 478, 556, 619, 804, 979
NlaIV	GGNNCC	1 cut(s)	643
NmeAIII	GCCGAG	2 cut(s)	13, 391
NmuCI	GTSAC	4 cut(s)	214, 349, 457, 826
NspV	TTCGAA	1 cut(s)	87
PagI	TCATGA	2 cut(s)	474, 975
PciSI	GCTCTTC	2 cut(s)	395, 617
PfeI	GAWTC	6 cut(s)	63, 226, 662, 698, 740, 979
PkrI	GCNGC	2 cut(s)	136, 161
PleI	GAGTC	1 cut(s)	346
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	385
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	169, 851
PspCI	CACGTG	1 cut(s)	385
PspGI	CCWGG	2 cut(s)	169, 851
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	990
RsaI	GTAC	3 cut(s)	806, 868, 878
RsaNI	GTAC	3 cut(s)	805, 867, 877
RseI	CAYNNNNRTG	2 cut(s)	636, 799
SacI	GAGCTC	1 cut(s)	507
SapI	GCTCTTC	2 cut(s)	395, 617
SaqAI	TTAA	2 cut(s)	962, 1006
SatI	GCNGC	2 cut(s)	135, 160
Sau3AI	GATC	3 cut(s)	425, 621, 990
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	171, 853
SduI	GDGCHC	5 cut(s)	178, 372, 390, 492, 507
SfaNI	GCATC	4 cut(s)	46, 724, 834, 873
SfuI	TTCGAA	1 cut(s)	87
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	636, 799
SmlI	CTYRAG	2 cut(s)	332, 542
SmoI	CTYRAG	2 cut(s)	332, 542
Sse9I	AATT	7 cut(s)	83, 109, 138, 339, 496, 590, 601
SspI	AATATT	1 cut(s)	129
SspMI	CTAG	2 cut(s)	152, 761
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	169, 851
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	4 cut(s)	74, 646, 736, 834
TaiI	ACGT	3 cut(s)	362, 387, 569
TaqI	TCGA	2 cut(s)	87, 501
TaqII	GACCGA	1 cut(s)	114
TasI	AATT	7 cut(s)	83, 109, 138, 339, 496, 590, 601
TatI	WGTACW	1 cut(s)	876
TfiI	GAWTC	6 cut(s)	63, 226, 662, 698, 740, 979
Tru1I	TTAA	2 cut(s)	962, 1006
Tru9I	TTAA	2 cut(s)	962, 1006
TscAI	CASTG	4 cut(s)	79, 408, 497, 837
TseFI	GTSAC	4 cut(s)	214, 349, 457, 826
TseI	GCWGC	2 cut(s)	134, 159
Tsp45I	GTSAC	4 cut(s)	214, 349, 457, 826
TspDTI	ATGAA	6 cut(s)	218, 238, 463, 491, 604, 992
TspRI	CASTG	4 cut(s)	79, 408, 497, 837
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	83
XspI	CTAG	2 cut(s)	152, 761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.