Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006459.1

Orthogroup ID

OG0010957

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2488

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1493 bp

tcttgaaagtcagtgatggttcttgtcctgcaactcttcaggtaattgttgaatcgtctatagtcccgccttgccagctgttgcataccgggacttgcatcacggtggaaggtgtgctgcagcaatctttggtgcaaggcaaacatgtcgttgagctgagagtggagaaagtgcttcatataggaacagttgattacagcaagtatccattgtcaaagaagagagtgccaattgataagttaagggagtgcttccacattcgcgctcggacaaccacggtgggatctgttatgcgaatcagaagtgccctgacttttggggctcatacattttgtcacaaccatggttttatttctgtgcaagtacccattataactacaacagactgcaacgggttcagtgaaaagtacaaggtcactggtctttttgacaaggcaggtcaaacggaggaacctaaagccattgctgaaattgaaggtgttagccttgaagctattaaggctgctgcaaaagagaagagtagcttagtagaggaactcaagaggactgatagcaataaggaagctctggccgctgcagtacaggatttaaggaaaacaaacgaattggcatcacaattggaagcaagagaaaaatcaaaactgaaaacttctcaaaagcttgacaatgttaagtcttccgaaggttcctcctcctcctcccaaacttttctaaccgtttctggacgcctgcatctggagagctatgcatgttcccttggcaatgtttactccttcggtcccagatttcgagcagataaaggagagtcccctaaacatgtcccagaaatgttgatgtttgaaattgaaatggctttttcacaactagaggacgtaatgaattgtgcagatgactttttcaagttcctctgcaaatgggtgttggaaaattgtccggaagatatgaaatttgttactgaaagaatagacaggaacaggattgatcgtcttcaatcagtgatttcaagttcatttgaaagaatttcctacgctgagacattaaatgttttaaacaaggttacggataagaaagttgaaacaaaattacagtggggtgctgcattaacagaagaagatttaagtcatttgtctgatgagatctacaagaagcctgtaattgtatacaattatccaaaagaagctaagccattctatgtacggctgaatgatgatggaaaaacagttgcagcatttgatatggttgtaccaaagatcggaaagttaatttctggtagccaaaatgaggagcgcacccaaatactaagtacaaggatcaaggatttggggttgccaagagagcagtatgaatggtacttggatcttcgcaggcatggaactgtcaagcactctggcttcagtcttgagtttgatcttatggttctctttgccactggccttactgatgtaagagatgctatcccctttcccagaagttatggcaaagcaaactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004816 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006421 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2

Protein Analysis

496

Amino Acids

55.73

Weight (kDa)

7.66

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07420 AT3G07420
fragaria_vesca	FvH4_2g17960
malus_domestica	MD05G1163500.v1.1 MD10G1153300.v1.1
prunus_persica	Prupe.8G192100_v2.0.a1
pyrus_communis	pycom05g15290 pycom10g13220
rosa_chinensis	RchiOBHm_Chr6g0283201
rosa_laevigata	RLG00000012837
rosa_multiflora	Rmu_sc0006459.1_g000001 Rmu_sc0013038.1_g000019
rosa_roxburghii	Rroxscaffold_2G00106680 Rroxscaffold_7G00185650
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265000 Rh6BG267900 Rh6CG267100 Rh6DG260300
rosa_wichuraiana	Rw6G022970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	1160
AccII	CGCG	1 cut(s)	263
AccIII	TCCGGA	1 cut(s)	933
AciI	CCGC	2 cut(s)	67, 572
AclWI	GGATC	3 cut(s)	291, 1318, 1364
AcoI	YGGCCR	1 cut(s)	569
AcsI	RAATTY	2 cut(s)	946, 1019
AcuI	CTGAAG	2 cut(s)	22, 1377
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	7 cut(s)	365, 409, 581, 1196, 1244, 1305, 1351
AfiI	CCNNNNNNNGG	3 cut(s)	735, 1252, 1281
AflIII	ACRYGT	2 cut(s)	144, 816
AluBI	AGCT	8 cut(s)	78, 156, 493, 524, 565, 660, 743, 1180
AluI	AGCT	8 cut(s)	78, 156, 493, 524, 565, 660, 743, 1180
Alw26I	GTCTC	1 cut(s)	1027
AlwI	GGATC	3 cut(s)	291, 1318, 1364
Aor13HI	TCCGGA	1 cut(s)	933
AoxI	GGCC	2 cut(s)	569, 1431
ApeKI	GCWGC	7 cut(s)	117, 120, 502, 505, 574, 1096, 1225
ApoI	RAATTY	2 cut(s)	946, 1019
AspLEI	GCGC	2 cut(s)	265, 1289
AspS9I	GGNCC	1 cut(s)	778
AsuC2I	CCSGG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	778
BaeGI	GKGCMC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	2 cut(s)	668, 979
BbvI	GCAGC	7 cut(s)	104, 132, 489, 492, 561, 1083, 1237
BccI	CCATC	2 cut(s)	10, 1204
BceAI	ACGGC	1 cut(s)	1213
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciVI	GTATCC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	1027
BfaI	CTAG	2 cut(s)	865, 1491
BfmI	CTRYAG	3 cut(s)	59, 118, 575
BfuAI	ACCTGC	1 cut(s)	427
BfuI	GTATCC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	1136
BisI	GCNGC	8 cut(s)	118, 121, 503, 506, 572, 575, 1097, 1226
BlpI	GCTNAGC	1 cut(s)	1181
BlsI	GCNGC	8 cut(s)	119, 122, 504, 507, 573, 576, 1098, 1227
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	3 cut(s)	452, 687, 780
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	4 cut(s)	107, 619, 741, 1440
BpiI	GAAGAC	2 cut(s)	668, 979
BpmI	CTGGAG	1 cut(s)	757
Bpu1102I	GCTNAGC	1 cut(s)	1181
BpuEI	CTTGAG	2 cut(s)	523, 1420
BpuMI	CCSGG	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	726
BsaJI	CCNNGG	3 cut(s)	275, 342, 756
BsaWI	WCCGGW	1 cut(s)	933
Bsc4I	CCNNNNNNNGG	3 cut(s)	735, 1252, 1281
Bse1I	ACTGG	2 cut(s)	423, 1434
Bse3DI	GCAATG	2 cut(s)	461, 768
BseAI	TCCGGA	1 cut(s)	933
BseDI	CCNNGG	3 cut(s)	275, 342, 756
BseLI	CCNNNNNNNGG	3 cut(s)	735, 1252, 1281
BseMI	GCAATG	2 cut(s)	461, 768
BseMII	CTCAG	2 cut(s)	148, 1022
BseNI	ACTGG	2 cut(s)	423, 1434
BseRI	GAGGAG	4 cut(s)	681, 684, 687, 1297
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	7 cut(s)	104, 132, 489, 492, 561, 1083, 1237
BsgI	GTGCAG	1 cut(s)	905
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	571, 1433
BsiSI	CCGG	2 cut(s)	89, 934
BslFI	GGGAC	5 cut(s)	49, 105, 764, 792, 805
BslI	CCNNNNNNNGG	3 cut(s)	735, 1252, 1281
BsmAI	GTCTC	1 cut(s)	1027
BsmFI	GGGAC	5 cut(s)	49, 105, 764, 792, 805
BsnI	GGCC	2 cut(s)	571, 1433
Bsp1286I	GDGCHC	2 cut(s)	309, 324
Bsp13I	TCCGGA	1 cut(s)	933
Bsp143I	GATC	7 cut(s)	283, 981, 1136, 1250, 1310, 1356, 1407
Bsp1720I	GCTNAGC	1 cut(s)	1181
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	67, 572
BspANI	GGCC	2 cut(s)	571, 1433
BspCNI	CTCAG	2 cut(s)	149, 1023
BspEI	TCCGGA	1 cut(s)	933
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	3 cut(s)	452, 687, 780
BspMAI	CTGCAG	2 cut(s)	122, 579
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	3 cut(s)	291, 1318, 1364
BsrDI	GCAATG	2 cut(s)	461, 768
BsrI	ACTGG	2 cut(s)	423, 1434
BssECI	CCNNGG	3 cut(s)	275, 342, 756
BssMI	GATC	7 cut(s)	283, 981, 1136, 1250, 1310, 1356, 1407
BssNAI	GTATAC	1 cut(s)	1161
BssNI	GRCGYC	1 cut(s)	726
BssT1I	CCWWGG	2 cut(s)	342, 756
Bst1107I	GTATAC	1 cut(s)	1161
Bst4CI	ACNGT	7 cut(s)	105, 189, 279, 717, 1088, 1221, 1377
Bst6I	CTCTTC	3 cut(s)	41, 214, 511
BstACI	GRCGYC	1 cut(s)	726
BstC8I	GCNNGC	3 cut(s)	76, 730, 1366
BstDEI	CTNAG	5 cut(s)	157, 525, 1031, 1181, 1300
BstDSI	CCRYGG	2 cut(s)	275, 342
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	2 cut(s)	265, 1289
BstKTI	GATC	7 cut(s)	286, 984, 1139, 1253, 1313, 1359, 1410
BstMAI	GTCTC	1 cut(s)	1027
BstMBI	GATC	7 cut(s)	283, 981, 1136, 1250, 1310, 1356, 1407
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 499, 571, 1335
BstNSI	RCATGY	3 cut(s)	148, 752, 820
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	3 cut(s)	59, 118, 575
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	7 cut(s)	104, 132, 489, 492, 561, 1083, 1237
BstV2I	GAAGAC	2 cut(s)	668, 979
BstX2I	RGATCY	3 cut(s)	283, 1136, 1356
BstYI	RGATCY	3 cut(s)	283, 1136, 1356
BstZ17I	GTATAC	1 cut(s)	1161
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	571, 1433
BtgI	CCRYGG	2 cut(s)	275, 342
BtsIMutI	CAGTG	6 cut(s)	18, 405, 416, 1001, 1093, 1427
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	3 cut(s)	76, 730, 1366
CfoI	GCGC	2 cut(s)	265, 1289
Cfr13I	GGNCC	1 cut(s)	778
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	7 cut(s)	364, 408, 580, 1195, 1243, 1304, 1350
CspCI	CAANNNNNGTGG	2 cut(s)	260, 295
CviAII	CATG	5 cut(s)	145, 343, 749, 817, 1369
CviQI	GTAC	7 cut(s)	364, 408, 580, 1195, 1243, 1304, 1350
DdeI	CTNAG	5 cut(s)	157, 525, 1031, 1181, 1300
DpnI	GATC	7 cut(s)	285, 983, 1138, 1252, 1312, 1358, 1409
DpnII	GATC	7 cut(s)	283, 981, 1136, 1250, 1310, 1356, 1407
DraI	TTTAAA	1 cut(s)	1049
EaeI	YGGCCR	1 cut(s)	569
Eam1104I	CTCTTC	3 cut(s)	41, 214, 511
EarI	CTCTTC	3 cut(s)	41, 214, 511
Eco130I	CCWWGG	2 cut(s)	342, 756
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	778
Eco57I	CTGAAG	2 cut(s)	22, 1377
EcoT14I	CCWWGG	2 cut(s)	342, 756
EcoT22I	ATGCAT	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	2 cut(s)	342, 756
FaeI	CATG	5 cut(s)	148, 346, 752, 820, 1372
FalI	AAGNNNNNCTT	2 cut(s)	508, 540
FaqI	GGGAC	5 cut(s)	49, 105, 764, 792, 805
FatI	CATG	5 cut(s)	144, 342, 748, 816, 1368
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	8 cut(s)	118, 121, 503, 506, 572, 575, 1097, 1226
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	8 cut(s)	118, 121, 503, 506, 572, 575, 1097, 1226
FspBI	CTAG	2 cut(s)	865, 1491
GlaI	GCGC	2 cut(s)	264, 1288
GluI	GCNGC	8 cut(s)	118, 121, 503, 506, 572, 575, 1097, 1226
GsuI	CTGGAG	1 cut(s)	757
HaeIII	GGCC	2 cut(s)	571, 1433
HapII	CCGG	2 cut(s)	89, 934
HgaI	GACGC	1 cut(s)	734
HhaI	GCGC	2 cut(s)	265, 1289
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	5 cut(s)	148, 346, 752, 820, 1372
Hin6I	GCGC	2 cut(s)	263, 1287
HinP1I	GCGC	2 cut(s)	263, 1287
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	3 cut(s)	52, 296, 805
HpaII	CCGG	2 cut(s)	89, 934
Hpy166II	GTNNAC	2 cut(s)	768, 1161
Hpy188I	TCNGA	5 cut(s)	269, 301, 681, 1131, 1255
Hpy188III	TCNNGA	6 cut(s)	3, 540, 722, 736, 934, 1399
Hpy8I	GTNNAC	2 cut(s)	768, 1161
HpyAV	CCTTC	4 cut(s)	103, 469, 676, 783
HpyCH4III	ACNGT	7 cut(s)	105, 189, 279, 717, 1088, 1221, 1377
HpyCH4IV	ACGT	1 cut(s)	872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 499, 571, 1335
HpyF3I	CTNAG	5 cut(s)	157, 525, 1031, 1181, 1300
HpySE526I	ACGT	1 cut(s)	872
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	5 cut(s)	148, 346, 752, 820, 1372
HspAI	GCGC	2 cut(s)	263, 1287
Kpn2I	TCCGGA	1 cut(s)	933
Kzo9I	GATC	7 cut(s)	283, 981, 1136, 1250, 1310, 1356, 1407
LmnI	GCTCC	1 cut(s)	1284
Lsp1109I	GCAGC	7 cut(s)	104, 132, 489, 492, 561, 1083, 1237
LweI	GCATC	4 cut(s)	107, 619, 741, 1440
MaeI	CTAG	2 cut(s)	865, 1491
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	4 cut(s)	334, 414, 951, 1056
MalI	GATC	7 cut(s)	285, 983, 1138, 1252, 1312, 1358, 1409
MboI	GATC	7 cut(s)	283, 981, 1136, 1250, 1310, 1356, 1407
MboII	GAAGA	9 cut(s)	28, 231, 528, 668, 949, 979, 1120, 1123, 1351
MfeI	CAATTG	2 cut(s)	230, 616
MflI	RGATCY	3 cut(s)	283, 1136, 1356
MhlI	GDGCHC	2 cut(s)	309, 324
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	1 cut(s)	902
Mph1103I	ATGCAT	1 cut(s)	750
MroI	TCCGGA	1 cut(s)	933
MseI	TTAA	9 cut(s)	241, 497, 589, 671, 1039, 1048, 1102, 1117, 1261
MslI	CAYNNNNRTG	2 cut(s)	103, 341
MspA1I	CMGCKG	2 cut(s)	78, 574
MspI	CCGG	2 cut(s)	89, 934
MspR9I	CCNGG	1 cut(s)	90
MunI	CAATTG	2 cut(s)	230, 616
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	4 cut(s)	75, 499, 571, 1335
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	7 cut(s)	283, 981, 1136, 1250, 1310, 1356, 1407
NlaIII	CATG	5 cut(s)	148, 346, 752, 820, 1372
NlaIV	GGNNCC	3 cut(s)	452, 687, 780
NmuCI	GTSAC	2 cut(s)	334, 414
NsiI	ATGCAT	1 cut(s)	750
NspI	RCATGY	3 cut(s)	148, 752, 820
PciI	ACATGT	2 cut(s)	144, 816
PfeI	GAWTC	2 cut(s)	52, 296
PkrI	GCNGC	8 cut(s)	119, 122, 504, 507, 573, 576, 1098, 1227
PleI	GAGTC	1 cut(s)	813
PpsI	GAGTC	1 cut(s)	813
PscI	ACATGT	2 cut(s)	144, 816
PsiI	TTATAA	1 cut(s)	373
PspN4I	GGNNCC	3 cut(s)	452, 687, 780
PspPI	GGNCC	1 cut(s)	778
PstI	CTGCAG	2 cut(s)	122, 579
PsuI	RGATCY	3 cut(s)	283, 1136, 1356
PvuII	CAGCTG	1 cut(s)	78
RsaI	GTAC	7 cut(s)	365, 409, 581, 1196, 1244, 1305, 1351
RsaNI	GTAC	7 cut(s)	364, 408, 580, 1195, 1243, 1304, 1350
RseI	CAYNNNNRTG	2 cut(s)	103, 341
SaqAI	TTAA	9 cut(s)	241, 497, 589, 671, 1039, 1048, 1102, 1117, 1261
SatI	GCNGC	8 cut(s)	118, 121, 503, 506, 572, 575, 1097, 1226
Sau3AI	GATC	7 cut(s)	283, 981, 1136, 1250, 1310, 1356, 1407
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	309, 324
SfaNI	GCATC	4 cut(s)	107, 619, 741, 1440
SfcI	CTRYAG	3 cut(s)	59, 118, 575
SinI	GGWCC	1 cut(s)	778
SmiMI	CAYNNNNRTG	2 cut(s)	103, 341
SmlI	CTYRAG	2 cut(s)	538, 1399
SmoI	CTYRAG	2 cut(s)	538, 1399
SsiI	CCGC	2 cut(s)	67, 572
SspMI	CTAG	2 cut(s)	865, 1491
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	2 cut(s)	342, 756
TaaI	ACNGT	7 cut(s)	105, 189, 279, 717, 1088, 1221, 1377
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	1 cut(s)	789
TaqII	GACCGA	1 cut(s)	766
TatI	WGTACW	3 cut(s)	407, 579, 1303
TauI	GCSGC	1 cut(s)	574
TfiI	GAWTC	2 cut(s)	52, 296
Tru1I	TTAA	9 cut(s)	241, 497, 589, 671, 1039, 1048, 1102, 1117, 1261
Tru9I	TTAA	9 cut(s)	241, 497, 589, 671, 1039, 1048, 1102, 1117, 1261
TscAI	CASTG	6 cut(s)	18, 405, 423, 1001, 1093, 1434
TseFI	GTSAC	2 cut(s)	334, 414
TseI	GCWGC	7 cut(s)	117, 120, 502, 505, 574, 1096, 1225
Tsp45I	GTSAC	2 cut(s)	334, 414
TspDTI	ATGAA	5 cut(s)	166, 892, 958, 998, 1358
TspGWI	ACGGA	2 cut(s)	460, 1075
TspRI	CASTG	6 cut(s)	18, 405, 423, 1001, 1093, 1434
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	2 cut(s)	946, 1019
XceI	RCATGY	3 cut(s)	148, 752, 820
XmiI	GTMKAC	1 cut(s)	1160
XspI	CTAG	2 cut(s)	865, 1491
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.